Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4830 and Psyr_4831 overlap by 4 nucleotides Psyr_4831 and Psyr_4832 are separated by 12 nucleotides Psyr_4832 and Psyr_4833 are separated by 54 nucleotides
Psyr_4830: Psyr_4830 - Binding-protein-dependent transport systems inner membrane component, at 5,732,872 to 5,733,723
_4830
Psyr_4831: Psyr_4831 - ABC transporter, at 5,733,720 to 5,734,550
_4831
Psyr_4832: Psyr_4832 - histidine ammonia-lyase, at 5,734,563 to 5,736,104
_4832
Psyr_4833: Psyr_4833 - histidine ammonia-lyase, at 5,736,159 to 5,737,706
_4833
Position (kb) 5734
5735
5736
5737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5733.853 kb on + strand, within Psyr_4831 at 5733.854 kb on - strand, within Psyr_4831 at 5734.015 kb on - strand, within Psyr_4831 at 5734.187 kb on - strand, within Psyr_4831 at 5734.213 kb on - strand, within Psyr_4831 at 5734.249 kb on + strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.472 kb on + strand at 5734.509 kb on + strand at 5734.510 kb on - strand at 5734.549 kb on - strand at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.999 kb on - strand, within Psyr_4832 at 5735.721 kb on + strand, within Psyr_4832 at 5735.721 kb on + strand, within Psyr_4832 at 5735.722 kb on - strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.988 kb on + strand at 5735.989 kb on - strand at 5736.100 kb on + strand at 5736.100 kb on + strand at 5736.100 kb on + strand at 5736.101 kb on - strand at 5736.101 kb on - strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.113 kb on + strand at 5736.113 kb on + strand at 5736.114 kb on - strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.150 kb on - strand at 5736.150 kb on - strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.232 kb on - strand at 5736.232 kb on - strand at 5736.576 kb on - strand, within Psyr_4833 at 5736.576 kb on - strand, within Psyr_4833 at 5736.656 kb on + strand, within Psyr_4833 at 5736.657 kb on - strand, within Psyr_4833
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 5,733,853 + Psyr_4831 0.16 +0.6 5,733,854 - Psyr_4831 0.16 -2.3 5,734,015 - Psyr_4831 0.35 -0.3 5,734,187 - Psyr_4831 0.56 -0.2 5,734,213 - Psyr_4831 0.59 +2.0 5,734,249 + Psyr_4831 0.64 +1.1 5,734,250 - Psyr_4831 0.64 -1.0 5,734,250 - Psyr_4831 0.64 -0.3 5,734,250 - Psyr_4831 0.64 +2.1 5,734,250 - Psyr_4831 0.64 -0.8 5,734,250 - Psyr_4831 0.64 -0.3 5,734,472 + +0.5 5,734,509 + -0.1 5,734,510 - +0.8 5,734,549 - +0.4 5,734,893 + Psyr_4832 0.21 -1.0 5,734,893 + Psyr_4832 0.21 +1.6 5,734,893 + Psyr_4832 0.21 -2.3 5,734,893 + Psyr_4832 0.21 +0.3 5,734,893 + Psyr_4832 0.21 +0.6 5,734,894 - Psyr_4832 0.21 +1.7 5,734,894 - Psyr_4832 0.21 -1.4 5,734,894 - Psyr_4832 0.21 -2.0 5,734,999 - Psyr_4832 0.28 -0.7 5,735,721 + Psyr_4832 0.75 -0.3 5,735,721 + Psyr_4832 0.75 -1.5 5,735,722 - Psyr_4832 0.75 -2.4 5,735,784 + Psyr_4832 0.79 -1.3 5,735,784 + Psyr_4832 0.79 -1.4 5,735,784 + Psyr_4832 0.79 -2.1 5,735,784 + Psyr_4832 0.79 +0.9 5,735,784 + Psyr_4832 0.79 +0.2 5,735,784 + Psyr_4832 0.79 -0.2 5,735,784 + Psyr_4832 0.79 +0.9 5,735,784 + Psyr_4832 0.79 -0.7 5,735,784 + Psyr_4832 0.79 +1.4 5,735,784 + Psyr_4832 0.79 +0.8 5,735,784 + Psyr_4832 0.79 -0.6 5,735,785 - Psyr_4832 0.79 -0.1 5,735,785 - Psyr_4832 0.79 +0.2 5,735,785 - Psyr_4832 0.79 +1.3 5,735,785 - Psyr_4832 0.79 -1.3 5,735,785 - Psyr_4832 0.79 -0.3 5,735,785 - Psyr_4832 0.79 -0.1 5,735,785 - Psyr_4832 0.79 +1.2 5,735,785 - Psyr_4832 0.79 -1.4 5,735,785 - Psyr_4832 0.79 -0.7 5,735,785 - Psyr_4832 0.79 +0.4 5,735,785 - Psyr_4832 0.79 +0.2 5,735,785 - Psyr_4832 0.79 -1.4 5,735,785 - Psyr_4832 0.79 -0.7 5,735,785 - Psyr_4832 0.79 -1.6 5,735,785 - Psyr_4832 0.79 -0.1 5,735,785 - Psyr_4832 0.79 +1.5 5,735,785 - Psyr_4832 0.79 -1.4 5,735,785 - Psyr_4832 0.79 +1.3 5,735,785 - Psyr_4832 0.79 +1.4 5,735,785 - Psyr_4832 0.79 +0.1 5,735,785 - Psyr_4832 0.79 -0.9 5,735,988 + +0.3 5,735,989 - +1.4 5,736,100 + -1.2 5,736,100 + +1.0 5,736,100 + +1.5 5,736,101 - -0.4 5,736,101 - -0.8 5,736,102 + +1.0 5,736,102 + -0.7 5,736,102 + +1.7 5,736,102 + -0.2 5,736,102 + -0.5 5,736,103 - -2.5 5,736,103 - -1.2 5,736,103 - -1.5 5,736,103 - -0.2 5,736,103 - -0.7 5,736,113 + +0.7 5,736,113 + -1.2 5,736,114 - -0.6 5,736,139 + +1.1 5,736,139 + +1.0 5,736,139 + +3.5 5,736,139 + -2.0 5,736,139 + +0.6 5,736,140 - +0.1 5,736,140 - -2.3 5,736,140 - -0.6 5,736,140 - -1.2 5,736,140 - +1.1 5,736,140 - -1.7 5,736,150 - +0.1 5,736,150 - +0.4 5,736,169 + +0.8 5,736,169 + -1.9 5,736,169 + +0.9 5,736,169 + +0.4 5,736,170 - +0.5 5,736,170 - +0.9 5,736,170 - +0.2 5,736,231 + +1.9 5,736,231 + +0.6 5,736,231 + -2.9 5,736,232 - +1.7 5,736,232 - -1.0 5,736,576 - Psyr_4833 0.27 -1.0 5,736,576 - Psyr_4833 0.27 -1.2 5,736,656 + Psyr_4833 0.32 +2.4 5,736,657 - Psyr_4833 0.32 -0.4
Or see this region's nucleotide sequence