Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4361 and Psyr_4362 are separated by 214 nucleotides Psyr_4362 and Psyr_4363 overlap by 1 nucleotides
Psyr_4361: Psyr_4361 - penicillin-binding protein 6, Serine peptidase, MEROPS family S11, at 5,213,965 to 5,215,152
_4361
Psyr_4362: Psyr_4362 - Rare lipoprotein A, at 5,215,367 to 5,216,395
_4362
Psyr_4363: Psyr_4363 - membrane-bound lytic murein transglycosylase B, at 5,216,395 to 5,217,402
_4363
Position (kb) 5215
5216
5217 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5214.401 kb on - strand, within Psyr_4361 at 5214.401 kb on - strand, within Psyr_4361 at 5214.536 kb on + strand, within Psyr_4361 at 5214.537 kb on - strand, within Psyr_4361 at 5214.546 kb on - strand, within Psyr_4361 at 5214.912 kb on - strand, within Psyr_4361 at 5214.912 kb on - strand, within Psyr_4361 at 5215.144 kb on - strand at 5215.278 kb on - strand at 5215.278 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.386 kb on - strand at 5215.687 kb on - strand, within Psyr_4362 at 5215.687 kb on - strand, within Psyr_4362 at 5215.900 kb on - strand, within Psyr_4362 at 5215.969 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.092 kb on - strand, within Psyr_4362 at 5216.396 kb on + strand at 5216.397 kb on - strand at 5216.397 kb on - strand at 5216.397 kb on - strand at 5216.397 kb on - strand at 5216.397 kb on - strand at 5216.439 kb on - strand at 5216.441 kb on - strand at 5216.441 kb on - strand at 5216.441 kb on - strand at 5216.454 kb on - strand at 5216.454 kb on - strand at 5216.472 kb on - strand at 5216.557 kb on - strand, within Psyr_4363 at 5216.721 kb on - strand, within Psyr_4363 at 5216.849 kb on + strand, within Psyr_4363 at 5216.850 kb on - strand, within Psyr_4363 at 5216.988 kb on + strand, within Psyr_4363 at 5217.016 kb on + strand, within Psyr_4363 at 5217.016 kb on + strand, within Psyr_4363 at 5217.017 kb on - strand, within Psyr_4363 at 5217.017 kb on - strand, within Psyr_4363 at 5217.056 kb on + strand, within Psyr_4363 at 5217.056 kb on + strand, within Psyr_4363 at 5217.056 kb on + strand, within Psyr_4363 at 5217.057 kb on - strand, within Psyr_4363 at 5217.057 kb on - strand, within Psyr_4363 at 5217.057 kb on - strand, within Psyr_4363 at 5217.311 kb on + strand at 5217.311 kb on + strand at 5217.311 kb on + strand at 5217.312 kb on - strand at 5217.312 kb on - strand at 5217.387 kb on + strand at 5217.387 kb on + strand at 5217.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 5,214,401 - Psyr_4361 0.37 -4.1 5,214,401 - Psyr_4361 0.37 -0.4 5,214,536 + Psyr_4361 0.48 -0.2 5,214,537 - Psyr_4361 0.48 -2.2 5,214,546 - Psyr_4361 0.49 -1.6 5,214,912 - Psyr_4361 0.80 -1.9 5,214,912 - Psyr_4361 0.80 -3.1 5,215,144 - -1.0 5,215,278 - -2.4 5,215,278 - +0.5 5,215,369 - +0.4 5,215,369 - -1.0 5,215,369 - +0.4 5,215,369 - +1.4 5,215,369 - +0.1 5,215,386 - +1.0 5,215,687 - Psyr_4362 0.31 -2.8 5,215,687 - Psyr_4362 0.31 +0.7 5,215,900 - Psyr_4362 0.52 -1.4 5,215,969 - Psyr_4362 0.59 -0.2 5,216,020 - Psyr_4362 0.63 -0.2 5,216,020 - -0.9 5,216,020 - Psyr_4362 0.63 -1.2 5,216,020 - Psyr_4362 0.63 -1.4 5,216,020 - Psyr_4362 0.63 -0.6 5,216,020 - Psyr_4362 0.63 -0.2 5,216,092 - Psyr_4362 0.70 -0.2 5,216,396 + -1.2 5,216,397 - -0.8 5,216,397 - +3.4 5,216,397 - -2.2 5,216,397 - -1.1 5,216,397 - -2.2 5,216,439 - +1.4 5,216,441 - -0.6 5,216,441 - -0.8 5,216,441 - +0.3 5,216,454 - -1.1 5,216,454 - -0.6 5,216,472 - -0.1 5,216,557 - Psyr_4363 0.16 +1.0 5,216,721 - Psyr_4363 0.32 -0.6 5,216,849 + Psyr_4363 0.45 +0.4 5,216,850 - Psyr_4363 0.45 +1.4 5,216,988 + Psyr_4363 0.59 +0.5 5,217,016 + Psyr_4363 0.62 -0.7 5,217,016 + Psyr_4363 0.62 -2.1 5,217,017 - Psyr_4363 0.62 -2.3 5,217,017 - Psyr_4363 0.62 -1.4 5,217,056 + Psyr_4363 0.66 +0.7 5,217,056 + Psyr_4363 0.66 -2.6 5,217,056 + Psyr_4363 0.66 +1.5 5,217,057 - Psyr_4363 0.66 +0.9 5,217,057 - Psyr_4363 0.66 -1.1 5,217,057 - Psyr_4363 0.66 +1.2 5,217,311 + -0.3 5,217,311 + +0.9 5,217,311 + +0.7 5,217,312 - -1.7 5,217,312 - +1.5 5,217,387 + -0.4 5,217,387 + -1.1 5,217,388 - -0.6
Or see this region's nucleotide sequence