Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4357 and Psyr_4358 are separated by 291 nucleotides Psyr_4358 and Psyr_4359 overlap by 8 nucleotides Psyr_4359 and Psyr_4360 overlap by 1 nucleotides
Psyr_4357: Psyr_4357 - HopAJ2 protein, at 5,210,314 to 5,211,651
_4357
Psyr_4358: Psyr_4358 - Lipoate synthase, at 5,211,943 to 5,212,950
_4358
Psyr_4359: Psyr_4359 - Lipoate-protein ligase B, at 5,212,943 to 5,213,599
_4359
Psyr_4360: Psyr_4360 - Protein of unknown function DUF493, at 5,213,599 to 5,213,874
_4360
Position (kb) 5211
5212
5213 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5210.945 kb on + strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.058 kb on - strand, within Psyr_4357 at 5211.058 kb on - strand, within Psyr_4357 at 5211.100 kb on + strand, within Psyr_4357 at 5211.100 kb on + strand, within Psyr_4357 at 5211.101 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.421 kb on + strand, within Psyr_4357 at 5211.421 kb on + strand, within Psyr_4357 at 5211.422 kb on - strand, within Psyr_4357 at 5211.422 kb on - strand, within Psyr_4357 at 5211.509 kb on - strand, within Psyr_4357 at 5211.546 kb on + strand at 5211.547 kb on - strand at 5211.715 kb on + strand at 5211.716 kb on - strand at 5211.787 kb on + strand at 5211.787 kb on + strand at 5211.787 kb on + strand at 5211.787 kb on + strand at 5211.854 kb on + strand at 5211.854 kb on + strand at 5211.854 kb on + strand at 5211.854 kb on + strand at 5211.855 kb on - strand at 5211.912 kb on - strand at 5213.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 5,210,945 + Psyr_4357 0.47 -0.5 5,210,946 - Psyr_4357 0.47 +0.5 5,210,946 - Psyr_4357 0.47 -1.8 5,210,946 - Psyr_4357 0.47 +0.8 5,210,946 - Psyr_4357 0.47 +0.7 5,211,013 + Psyr_4357 0.52 -3.1 5,211,013 + Psyr_4357 0.52 -0.1 5,211,013 + Psyr_4357 0.52 +2.8 5,211,013 + Psyr_4357 0.52 +0.2 5,211,013 + Psyr_4357 0.52 +2.3 5,211,013 + Psyr_4357 0.52 +0.6 5,211,013 + Psyr_4357 0.52 +0.9 5,211,013 + Psyr_4357 0.52 -0.3 5,211,013 + Psyr_4357 0.52 +0.9 5,211,013 + Psyr_4357 0.52 -0.9 5,211,014 - Psyr_4357 0.52 -0.6 5,211,014 - Psyr_4357 0.52 -1.4 5,211,014 - Psyr_4357 0.52 -0.9 5,211,014 - Psyr_4357 0.52 +0.2 5,211,014 - Psyr_4357 0.52 -2.2 5,211,014 - Psyr_4357 0.52 +1.3 5,211,014 - Psyr_4357 0.52 +0.9 5,211,014 - Psyr_4357 0.52 +0.0 5,211,014 - Psyr_4357 0.52 +0.4 5,211,014 - Psyr_4357 0.52 -1.5 5,211,058 - Psyr_4357 0.56 -1.8 5,211,058 - Psyr_4357 0.56 -0.8 5,211,100 + Psyr_4357 0.59 -0.7 5,211,100 + Psyr_4357 0.59 -3.9 5,211,101 - Psyr_4357 0.59 +2.8 5,211,356 - Psyr_4357 0.78 -0.7 5,211,356 - Psyr_4357 0.78 +0.6 5,211,356 - Psyr_4357 0.78 +0.9 5,211,356 - Psyr_4357 0.78 -1.5 5,211,421 + Psyr_4357 0.83 +1.1 5,211,421 + Psyr_4357 0.83 -0.4 5,211,422 - Psyr_4357 0.83 +0.5 5,211,422 - Psyr_4357 0.83 -0.5 5,211,509 - Psyr_4357 0.89 -0.8 5,211,546 + +1.0 5,211,547 - +1.2 5,211,715 + +0.7 5,211,716 - -1.4 5,211,787 + +0.7 5,211,787 + +0.7 5,211,787 + +0.9 5,211,787 + -0.1 5,211,854 + -0.5 5,211,854 + -0.9 5,211,854 + +2.0 5,211,854 + +0.6 5,211,855 - -0.2 5,211,912 - -1.0 5,213,881 - +0.4
Or see this region's nucleotide sequence