Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4318

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,168,009	-				+1.0
5,168,016	+				+0.5
5,168,016	+				-2.8
5,168,016	+				-1.3
5,168,016	+				-0.8
5,168,016	+				-1.3
5,168,017	-				-0.4
5,168,017	-				+1.0
5,168,017	-				-0.7
5,168,065	+				+0.0
5,168,065	+				+0.4
5,168,065	+				+1.5
5,168,066	-				-0.7
5,168,066	-				+0.7
5,168,066	-				-0.5
5,168,066	-				+0.1
5,168,066	-				-0.3
5,168,066	-				+1.3
5,168,066	-				+0.5
5,168,066	-				+1.7
5,168,079	+				+0.7
5,168,156	+				-2.5
5,168,157	-				-1.8
5,168,228	-				+2.3
5,168,228	-				+1.0
5,168,271	+				-0.8
5,168,272	-				+0.4
5,168,272	-				-1.5
5,168,272	-				+0.4
5,168,275	-				+1.5
5,168,302	+				-0.1
5,168,350	+				-0.6
5,168,351	-				+1.2
5,168,405	+				-0.5
5,168,424	+				+0.3
5,168,438	-				-4.0
5,168,472	+				+0.8
5,168,472	+				+0.1
5,168,473	-				+0.4
5,168,473	-				-2.6
5,168,473	-				+2.3
5,168,473	-				+0.0
5,168,473	-				-0.9
5,168,476	+				+1.6
5,168,476	+				+0.6
5,168,477	-				+0.9
5,168,477	-				+0.9
5,168,518	+				-0.1
5,168,596	-				-0.5
5,168,601	-				+0.9
5,168,609	+				-0.6
5,168,723	+				-0.4
5,168,757	+				-0.2
5,168,757	+				+0.8
5,168,757	+				+0.4
5,168,757	+				+1.1
5,168,757	+				-1.0
5,168,757	+				-2.4
5,168,757	+				-1.0
5,168,757	+				-2.7
5,168,758	-				-0.7
5,168,758	-				-0.4
5,168,758	-				-0.3
5,168,758	-				+0.3
5,168,758	-				-2.5
5,168,760	-				-1.4
5,168,780	+				-1.6
5,168,780	+				-0.7
5,168,783	+				-3.1
5,168,783	+				-0.5
5,168,784	-				-1.0
5,168,784	-				-1.6
5,168,784	-				-0.4
5,168,816	+				+0.2
5,168,817	-				+0.9
5,168,817	-				+0.7
5,168,876	-				-1.3
5,168,937	-				-3.4
5,168,939	-				+1.0
5,168,947	+				-0.7
5,168,948	-				+0.4
5,168,948	-				-0.1
5,168,948	-				-0.7
5,168,977	+				-1.5
5,169,105	+		Psyr_4318	0.14	+0.1
5,169,180	+		Psyr_4318	0.21	-0.2
5,169,180	+		Psyr_4318	0.21	-1.3
5,169,181	-		Psyr_4318	0.22	-0.4
5,169,181	-		Psyr_4318	0.22	+0.7
5,169,182	+		Psyr_4318	0.22	-0.5
5,169,234	+		Psyr_4318	0.27	+0.8
5,169,235	-		Psyr_4318	0.27	-0.7
5,169,410	-		Psyr_4318	0.44	-0.9
5,169,412	+		Psyr_4318	0.45	+0.8
5,169,412	+		Psyr_4318	0.45	-0.2
5,169,412	+		Psyr_4318	0.45	-1.8
5,169,439	+		Psyr_4318	0.47	-1.7
5,169,439	+		Psyr_4318	0.47	-1.8
5,169,440	-		Psyr_4318	0.47	-1.0
5,169,443	+		Psyr_4318	0.48	+0.2
5,169,443	+		Psyr_4318	0.48	-0.4
5,169,444	-		Psyr_4318	0.48	-1.2
5,169,444	-		Psyr_4318	0.48	+0.8
5,169,450	+		Psyr_4318	0.48	-1.0
5,169,450	+		Psyr_4318	0.48	+0.1
5,169,450	+		Psyr_4318	0.48	+0.3
5,169,450	+		Psyr_4318	0.48	-2.8
5,169,450	+		Psyr_4318	0.48	-1.1
5,169,450	+		Psyr_4318	0.48	-1.2
5,169,451	-		Psyr_4318	0.49	-1.4
5,169,451	-		Psyr_4318	0.49	-0.2
5,169,451	-		Psyr_4318	0.49	-1.3
5,169,451	-		Psyr_4318	0.49	-0.7
5,169,451	-		Psyr_4318	0.49	+2.5
5,169,451	-		Psyr_4318	0.49	-1.5
5,169,451	-		Psyr_4318	0.49	-0.0
5,169,456	+		Psyr_4318	0.49	-0.8
5,169,456	+		Psyr_4318	0.49	+0.3
5,169,456	+		Psyr_4318	0.49	+1.2
5,169,456	+		Psyr_4318	0.49	-0.8
5,169,457	-		Psyr_4318	0.49	-0.9
5,169,457	-		Psyr_4318	0.49	-0.3
5,169,457	-		Psyr_4318	0.49	+0.3
5,169,457	-		Psyr_4318	0.49	+0.8
5,169,479	+		Psyr_4318	0.51	+0.4
5,169,479	+		Psyr_4318	0.51	-0.0
5,169,479	+		Psyr_4318	0.51	-0.9
5,169,479	+		Psyr_4318	0.51	-0.8
5,169,479	+		Psyr_4318	0.51	+0.7
5,169,479	+		Psyr_4318	0.51	-0.8
5,169,479	+		Psyr_4318	0.51	-1.3
5,169,479	+		Psyr_4318	0.51	-1.1
5,169,480	-		Psyr_4318	0.51	-1.0
5,169,480	-		Psyr_4318	0.51	+0.3
5,169,480	-		Psyr_4318	0.51	+0.2
5,169,480	-		Psyr_4318	0.51	+0.2
5,169,480	-		Psyr_4318	0.51	-0.6
5,169,480	-		Psyr_4318	0.51	+1.4
5,169,480	-		Psyr_4318	0.51	+0.9
5,169,480	-		Psyr_4318	0.51	+1.8
5,169,480	-		Psyr_4318	0.51	-0.2
5,169,480	-		Psyr_4318	0.51	-1.5
5,169,480	-		Psyr_4318	0.51	-2.1
5,169,480	-		Psyr_4318	0.51	-0.5
5,169,481	+		Psyr_4318	0.52	+1.0
5,169,481	+		Psyr_4318	0.52	-0.0
5,169,481	+		Psyr_4318	0.52	+0.6
5,169,481	+		Psyr_4318	0.52	-2.7
5,169,482	-		Psyr_4318	0.52	-0.4
5,169,482	-		Psyr_4318	0.52	-2.4
5,169,482	-		Psyr_4318	0.52	+1.0
5,169,501	+		Psyr_4318	0.54	-0.3
5,169,501	+		Psyr_4318	0.54	-0.9
5,169,741	-		Psyr_4318	0.78	-0.2
5,169,741	-		Psyr_4318	0.78	-1.4
5,169,741	-		Psyr_4318	0.78	+1.3
5,169,773	+		Psyr_4318	0.81	-1.3
5,169,773	+		Psyr_4318	0.81	-0.9
5,169,773	+		Psyr_4318	0.81	+0.8
5,169,773	+		Psyr_4318	0.81	+0.2
5,169,773	+		Psyr_4318	0.81	-1.7
5,169,774	-		Psyr_4318	0.81	-0.3
5,169,774	-		Psyr_4318	0.81	+0.6
5,169,774	-		Psyr_4318	0.81	-0.6
5,169,774	-				+1.7
5,169,775	+		Psyr_4318	0.81	-1.8
5,169,775	+		Psyr_4318	0.81	+0.1
5,169,775	+		Psyr_4318	0.81	-0.1
5,169,775	+		Psyr_4318	0.81	+1.1
5,169,775	+		Psyr_4318	0.81	+0.2
5,169,775	+		Psyr_4318	0.81	+1.2
5,169,776	-		Psyr_4318	0.81	+0.7
5,169,776	-		Psyr_4318	0.81	-0.6
5,169,776	-		Psyr_4318	0.81	+1.7
5,169,776	-		Psyr_4318	0.81	-0.8
5,169,776	-		Psyr_4318	0.81	-0.6
5,169,821	+		Psyr_4318	0.86	+1.9
5,169,821	+		Psyr_4318	0.86	-0.8
5,169,822	-		Psyr_4318	0.86	+0.3
5,169,854	-		Psyr_4318	0.89	-0.5
5,169,891	+				-1.5
5,169,958	-				-0.9
5,169,958	-				+0.9
5,169,958	-				+0.5
5,169,958	-				-0.2
5,169,958	-				+1.7
5,169,958	-				-1.4
5,169,958	-				-1.8
5,169,959	+				-0.2
5,169,959	+				+0.4
5,169,959	+				-1.3
5,169,959	+				-0.3
5,169,959	+				+0.2
5,169,960	-				+0.3
5,169,960	-				-1.1
5,169,960	-				+1.1
5,169,960	-				+1.1
5,169,960	-				+0.1
5,169,963	-				+1.7
5,169,963	-				+0.7
5,170,021	+				+0.2
5,170,021	+				-1.5
5,170,021	+				+0.3
5,170,021	+				+2.5
5,170,021	+				+2.1
5,170,021	+				+0.9
5,170,021	+				-1.3
5,170,021	+				+0.8
5,170,021	+				-1.7
5,170,021	+				-0.9
5,170,021	+				+1.5
5,170,021	+				-0.1
5,170,021	+				-1.4
5,170,022	-				-0.5
5,170,022	-				-0.8
5,170,022	-				+0.7
5,170,022	-				+0.1
5,170,022	-				-0.5
5,170,022	-				+0.8
5,170,031	+				-0.8
5,170,031	+				+0.8
5,170,032	-				-3.5
5,170,072	+				-0.1
5,170,072	+				+1.6
5,170,073	-				-0.6
5,170,073	-				+0.8
5,170,073	-				+0.6
5,170,073	-				-1.8
5,170,073	-				-0.2
5,170,073	-				+2.1
5,170,109	+				+1.1
5,170,109	+				+0.0
5,170,109	+				+1.4
5,170,110	-				-0.7
5,170,114	+				-0.7
5,170,130	+				-0.6
5,170,131	-				-0.4
5,170,131	-				-1.9
5,170,175	+				-0.9
5,170,196	+				+0.5
5,170,196	+				+1.0
5,170,254	+				+1.5
5,170,255	-				-0.7
5,170,378	-				-0.2
5,170,452	+				+3.2
5,170,452	+				+0.8
5,170,452	+				+0.0
5,170,453	-				+2.5
5,170,453	-				+0.3
5,170,502	+		Psyr_4319	0.13	-0.9
5,170,502	+		Psyr_4319	0.13	+3.2
5,170,502	+		Psyr_4319	0.13	+1.6
5,170,502	+		Psyr_4319	0.13	-1.6
5,170,502	+		Psyr_4319	0.13	-0.4
5,170,502	+		Psyr_4319	0.13	+1.6
5,170,502	+		Psyr_4319	0.13	+0.8
5,170,502	+		Psyr_4319	0.13	+0.4
5,170,502	+		Psyr_4319	0.13	-2.2
5,170,502	+		Psyr_4319	0.13	+0.8
5,170,502	+		Psyr_4319	0.13	-0.2
5,170,502	+		Psyr_4319	0.13	+2.4
5,170,503	-		Psyr_4319	0.13	-0.6
5,170,503	-		Psyr_4319	0.13	-0.0
5,170,503	-		Psyr_4319	0.13	-0.3
5,170,503	-		Psyr_4319	0.13	+1.4
5,170,503	-		Psyr_4319	0.13	+0.4
5,170,503	-		Psyr_4319	0.13	-0.7
5,170,503	-		Psyr_4319	0.13	+0.8
5,170,503	-		Psyr_4319	0.13	+1.8
5,170,503	-		Psyr_4319	0.13	-1.4
5,170,503	-		Psyr_4319	0.13	+0.2
5,170,503	-		Psyr_4319	0.13	+0.1
5,170,503	-		Psyr_4319	0.13	-0.4
5,170,503	-		Psyr_4319	0.13	-0.0
5,170,564	+		Psyr_4319	0.29	-1.9
5,170,564	+		Psyr_4319	0.29	-0.1
5,170,564	+		Psyr_4319	0.29	+1.6
5,170,565	-		Psyr_4319	0.29	+0.2
5,170,565	-		Psyr_4319	0.29	+0.8
5,170,566	+		Psyr_4319	0.29	+0.4
5,170,567	-		Psyr_4319	0.29	+0.5
5,170,567	-		Psyr_4319	0.29	+0.6
5,170,622	-		Psyr_4319	0.43	-0.6
5,170,658	+		Psyr_4319	0.52	+0.3
5,170,713	+		Psyr_4319	0.66	-0.0
5,170,713	+		Psyr_4319	0.66	+0.4
5,170,713	+		Psyr_4319	0.66	-1.6
5,170,714	-		Psyr_4319	0.66	-0.6
5,170,714	-		Psyr_4319	0.66	-1.1
5,170,714	-		Psyr_4319	0.66	+3.2
5,170,726	+		Psyr_4319	0.69	-0.7
5,170,746	+		Psyr_4319	0.74	+1.9
5,170,746	+		Psyr_4319	0.74	+2.7
5,170,747	-		Psyr_4319	0.75	-1.6
5,170,747	-		Psyr_4319	0.75	+0.4
5,170,747	-		Psyr_4319	0.75	+0.1
5,170,747	-		Psyr_4319	0.75	-0.5
5,170,747	-		Psyr_4319	0.75	-1.0
5,170,747	-		Psyr_4319	0.75	-0.5
5,170,863	-				-0.3
5,170,869	+				+0.6
5,170,876	+				-0.3
5,170,877	-				+2.2
5,170,888	+				+0.4
5,170,888	+				-0.9
5,170,889	-				-0.6
5,170,889	-				+0.6
5,170,917	-				-0.0
5,170,948	+				-1.3