Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3153

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
3,776,722	+		Psyr_3151	0.90	+0.7
3,776,734	-				-0.1
3,776,904	+				-1.1
3,776,904	+				+0.3
3,776,904	+				-0.7
3,776,904	+				+0.8
3,776,904	+				+0.5
3,776,904	+				-2.1
3,776,904	+				-0.2
3,776,904	+				-1.4
3,776,904	+				-2.1
3,776,904	+				-0.4
3,776,904	+				-1.1
3,776,905	-				+0.6
3,776,905	-				-0.0
3,776,905	-				-0.1
3,776,905	-				-1.3
3,776,905	-				-1.0
3,776,905	-				+0.7
3,776,905	-				-0.7
3,776,905	-				-1.9
3,776,905	-				-0.1
3,776,905	-				+2.1
3,776,905	-				-0.8
3,776,905	-				+1.0
3,776,905	-				-1.7
3,776,905	-				+1.3
3,776,905	-				+1.9
3,776,907	+				-1.7
3,776,907	+				+0.7
3,776,907	+				-0.4
3,776,907	+				-1.4
3,776,907	+				-1.4
3,776,907	+				-2.7
3,776,908	-				+0.1
3,776,908	-				+0.1
3,776,908	-				-0.8
3,776,908	-				+1.2
3,776,908	-				-0.3
3,777,185	+		Psyr_3152	0.78	+0.1
3,777,186	-		Psyr_3152	0.79	-0.4
3,777,235	+				-2.0
3,777,236	-				+0.5
3,777,236	-				+0.5
3,777,388	+				-2.0
3,777,389	-				-1.0
3,777,389	-				-0.7
3,777,399	+				+1.1
3,777,399	+				-1.3
3,777,399	+				+1.3
3,777,399	+				-1.7
3,777,399	+				+0.9
3,777,399	+				-0.2
3,777,400	-				-1.5
3,777,412	-				-0.2
3,777,418	-				+1.2
3,777,418	-				-0.3
3,777,543	-				-1.8
3,777,606	-				+0.1
3,777,609	+				+2.2
3,777,610	-				-1.7
3,777,622	-				-0.4
3,777,650	+				+2.4
3,777,676	-				-1.9
3,777,764	+				+1.0
3,777,764	+				+0.9
3,777,765	-				+0.3
3,777,844	+				+0.1
3,777,844	+				+0.5
3,777,844	+				-2.4
3,777,844	+				+0.0
3,777,844	+				-0.3
3,777,845	-				+0.6
3,777,845	-				-0.1
3,777,845	-				+1.1
3,777,845	-				-0.2
3,777,889	+				-2.8
3,777,938	-				+0.4
3,778,129	+		Psyr_3153	0.17	-1.3
3,778,205	+		Psyr_3153	0.19	+1.3
3,778,206	-		Psyr_3153	0.19	+0.2
3,778,206	-		Psyr_3153	0.19	+0.6
3,778,206	-		Psyr_3153	0.19	+0.8
3,778,448	+		Psyr_3153	0.28	-1.0
3,778,460	-		Psyr_3153	0.29	-0.7
3,778,460	-		Psyr_3153	0.29	-0.4
3,778,460	-		Psyr_3153	0.29	+1.0
3,778,621	+		Psyr_3153	0.34	+1.9
3,778,621	+		Psyr_3153	0.34	-1.9
3,778,621	+		Psyr_3153	0.34	-0.4
3,778,621	+		Psyr_3153	0.34	+1.6
3,778,621	+		Psyr_3153	0.34	+0.7
3,778,622	-		Psyr_3153	0.35	-0.5
3,778,627	+		Psyr_3153	0.35	+0.0
3,778,628	-		Psyr_3153	0.35	+1.1
3,778,628	-		Psyr_3153	0.35	+1.8
3,778,628	-		Psyr_3153	0.35	+0.2
3,778,628	-		Psyr_3153	0.35	-0.4
3,778,721	+		Psyr_3153	0.38	-1.6
3,778,722	-		Psyr_3153	0.38	-0.4
3,778,804	+		Psyr_3153	0.41	+1.3
3,778,804	+		Psyr_3153	0.41	+0.4
3,778,805	-		Psyr_3153	0.41	+1.3
3,778,853	-		Psyr_3153	0.43	+1.7
3,778,853	-		Psyr_3153	0.43	+0.1
3,778,853	-		Psyr_3153	0.43	+0.3
3,778,996	+		Psyr_3153	0.48	+0.9
3,779,161	-		Psyr_3153	0.54	-0.1
3,779,161	-		Psyr_3153	0.54	-2.1
3,779,432	+		Psyr_3153	0.64	+1.1
3,779,433	-		Psyr_3153	0.64	+1.0
3,779,433	-		Psyr_3153	0.64	+0.7
3,779,433	-		Psyr_3153	0.64	-0.5
3,779,512	-		Psyr_3153	0.67	-2.4
3,779,512	-		Psyr_3153	0.67	+1.5
3,779,626	+		Psyr_3153	0.71	+0.2
3,779,626	+		Psyr_3153	0.71	-1.9
3,779,626	+		Psyr_3153	0.71	+2.3
3,779,626	+		Psyr_3153	0.71	+0.5
3,779,626	+		Psyr_3153	0.71	-0.4
3,779,626	+		Psyr_3153	0.71	-1.4
3,779,626	+		Psyr_3153	0.71	+1.1
3,779,626	+		Psyr_3153	0.71	-0.3
3,779,626	+		Psyr_3153	0.71	+0.3
3,779,627	-		Psyr_3153	0.71	-3.5
3,779,627	-		Psyr_3153	0.71	-0.1
3,779,627	-		Psyr_3153	0.71	-3.0
3,779,627	-		Psyr_3153	0.71	-2.0
3,779,627	-		Psyr_3153	0.71	-1.3
3,779,627	-		Psyr_3153	0.71	-0.3
3,779,627	-		Psyr_3153	0.71	+1.0
3,779,627	-		Psyr_3153	0.71	+0.8
3,779,693	-		Psyr_3153	0.74	+1.6
3,779,855	-		Psyr_3153	0.79	+0.5
3,779,938	+		Psyr_3153	0.82	+1.2
3,779,938	+		Psyr_3153	0.82	+1.3
3,779,938	+		Psyr_3153	0.82	+0.7
3,779,939	-		Psyr_3153	0.83	+0.0
3,779,939	-		Psyr_3153	0.83	+0.1
3,779,939	-		Psyr_3153	0.83	-0.9
3,779,994	+		Psyr_3153	0.85	+1.1
3,779,995	-		Psyr_3153	0.85	+2.3
3,780,064	+		Psyr_3153	0.87	+1.1
3,780,064	+		Psyr_3153	0.87	+0.7
3,780,064	+		Psyr_3153	0.87	+0.5
3,780,064	+		Psyr_3153	0.87	+0.7
3,780,064	+		Psyr_3153	0.87	+2.6
3,780,064	+		Psyr_3153	0.87	-1.9
3,780,064	+		Psyr_3153	0.87	-0.7
3,780,064	+		Psyr_3153	0.87	+0.5
3,780,064	+		Psyr_3153	0.87	+1.7
3,780,064	+		Psyr_3153	0.87	-1.8
3,780,065	-		Psyr_3153	0.87	+0.8
3,780,065	-		Psyr_3153	0.87	-0.7
3,780,065	-		Psyr_3153	0.87	+2.8
3,780,065	-		Psyr_3153	0.87	+1.3
3,780,065	-		Psyr_3153	0.87	+0.5
3,780,065	-		Psyr_3153	0.87	-0.3
3,780,065	-		Psyr_3153	0.87	-0.9
3,780,119	-		Psyr_3153	0.89	+0.2
3,780,395	+				-0.2
3,780,396	-				-0.7
3,780,396	-				-0.8
3,780,396	-				+0.5
3,780,396	-				+0.4
3,780,416	-				-0.2
3,780,416	-				+0.0
3,780,449	+				+0.7
3,780,449	+				-1.4
3,780,449	+				-0.5
3,780,450	-				+0.9
3,780,450	-				+1.1
3,780,450	-				-0.8
3,780,496	+				-2.1
3,780,496	+				-0.9
3,780,496	+				-0.4
3,780,496	+				+0.7
3,780,496	+				+0.3
3,780,496	+				+0.2
3,780,496	+				-1.1
3,780,496	+				+0.4
3,780,496	+				+0.1
3,780,496	+				-0.2
3,780,497	-				-0.2
3,780,497	-				+0.4
3,780,497	-				+0.8
3,780,497	-				+0.3
3,780,497	-				+0.2
3,780,497	-				-2.3
3,780,497	-				-0.7
3,780,497	-				+1.1
3,780,497	-				-1.1
3,780,497	-				-0.2
3,780,615	+		Psyr_3154	0.25	+1.1
3,780,616	-		Psyr_3154	0.25	-1.4
3,780,616	-		Psyr_3154	0.25	+1.9
3,780,616	-		Psyr_3154	0.25	+0.1
3,780,668	+		Psyr_3154	0.33	-0.6
3,780,750	+		Psyr_3154	0.46	-0.1
3,780,974	+		Psyr_3154	0.80	+0.6
3,780,976	+		Psyr_3154	0.81	+0.3
3,780,976	+		Psyr_3154	0.81	+0.5
3,780,976	+		Psyr_3154	0.81	-1.7
3,781,100	+				-0.4
3,781,101	-				+2.4
3,781,101	-				-0.5
3,781,133	-				+0.7
3,781,193	+				+0.9
3,781,194	-				+1.1
3,781,194	-				-0.6