Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0909

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,029,887	+		Psyr_0908	0.42	+1.7
1,029,887	+		Psyr_0908	0.42	+0.6
1,029,887	+		Psyr_0908	0.42	-1.3
1,029,887	+		Psyr_0908	0.42	+0.8
1,029,887	+		Psyr_0908	0.42	-0.6
1,029,887	+		Psyr_0908	0.42	-1.8
1,029,887	+		Psyr_0908	0.42	+0.8
1,029,887	+		Psyr_0908	0.42	+0.7
1,029,887	+		Psyr_0908	0.42	-1.2
1,029,888	-		Psyr_0908	0.42	-1.4
1,029,888	-		Psyr_0908	0.42	+2.0
1,029,888	-		Psyr_0908	0.42	-0.5
1,029,888	-		Psyr_0908	0.42	+0.1
1,029,888	-		Psyr_0908	0.42	-0.2
1,029,888	-		Psyr_0908	0.42	-1.4
1,029,918	-		Psyr_0908	0.45	-0.1
1,029,928	-		Psyr_0908	0.46	-1.6
1,030,019	+		Psyr_0908	0.54	+1.2
1,030,019	+		Psyr_0908	0.54	-0.2
1,030,020	-		Psyr_0908	0.54	+1.1
1,030,020	-		Psyr_0908	0.54	+0.4
1,030,160	+		Psyr_0908	0.66	+1.2
1,030,160	+		Psyr_0908	0.66	-0.6
1,030,199	-		Psyr_0908	0.70	+1.3
1,030,199	-		Psyr_0908	0.70	-0.4
1,030,199	-		Psyr_0908	0.70	-1.6
1,030,295	+		Psyr_0908	0.78	+1.4
1,030,295	+		Psyr_0908	0.78	+1.5
1,030,295	+		Psyr_0908	0.78	+2.0
1,030,295	+		Psyr_0908	0.78	-1.4
1,030,295	+		Psyr_0908	0.78	+0.8
1,030,295	+		Psyr_0908	0.78	+0.3
1,030,295	+		Psyr_0908	0.78	+0.4
1,030,295	+		Psyr_0908	0.78	-0.2
1,030,295	+		Psyr_0908	0.78	-1.8
1,030,296	-		Psyr_0908	0.78	+1.0
1,030,296	-		Psyr_0908	0.78	-0.3
1,030,296	-		Psyr_0908	0.78	-0.1
1,030,296	-		Psyr_0908	0.78	-0.6
1,030,296	-		Psyr_0908	0.78	+2.9
1,030,457	+				-1.8
1,030,457	+				-1.3
1,030,457	+				-3.6
1,030,458	-				+0.0
1,030,475	+				+0.1
1,030,475	+				-1.4
1,030,475	+				-1.1
1,030,475	+				+1.7
1,030,475	+				-0.2
1,030,475	+				-1.0
1,030,476	-				-0.6
1,030,476	-				-0.4
1,030,476	-				+0.1
1,030,476	-				-1.8
1,030,476	-				+0.4
1,030,476	-				+1.0
1,030,521	-				-0.5
1,030,539	+				+1.7
1,030,539	+				+1.9
1,030,540	-				+2.0
1,030,540	-				-0.0
1,030,540	-				+0.7
1,030,564	+				-2.3
1,030,564	+				-1.4
1,030,565	-				+0.5
1,030,565	-				-1.0
1,030,570	+				-1.4
1,030,570	+				+1.4
1,030,713	+				+0.6
1,030,713	+				-1.3
1,030,723	+				-1.2
1,030,723	+				+1.0
1,031,147	+		Psyr_0909	0.53	+1.4
1,031,161	+		Psyr_0909	0.54	+2.2
1,031,356	+		Psyr_0909	0.76	-1.4
1,031,356	+		Psyr_0909	0.76	+0.5
1,031,357	-		Psyr_0909	0.76	-0.3
1,031,424	-		Psyr_0909	0.83	+0.9
1,031,476	+		Psyr_0909	0.89	-0.9
1,031,476	+		Psyr_0909	0.89	-1.2
1,031,476	+		Psyr_0909	0.89	+0.1
1,031,476	+		Psyr_0909	0.89	-0.0
1,031,476	+		Psyr_0909	0.89	-1.5
1,031,476	+		Psyr_0909	0.89	-1.0
1,031,476	+		Psyr_0909	0.89	-1.3
1,031,476	+		Psyr_0909	0.89	+0.9
1,031,476	+		Psyr_0909	0.89	+1.2
1,031,477	-		Psyr_0909	0.89	-0.8
1,031,477	-		Psyr_0909	0.89	-0.9
1,031,477	-		Psyr_0909	0.89	-1.0
1,031,477	-		Psyr_0909	0.89	-0.6
1,031,477	-		Psyr_0909	0.89	+0.0
1,031,621	+				-0.2
1,031,621	+				-1.9
1,031,621	+				-1.5
1,031,621	+				+0.9
1,031,621	+				-1.2
1,031,622	-				+0.7
1,031,622	-				+0.0
1,031,622	-				+3.6
1,031,622	-				+1.3
1,031,622	-				-0.4
1,031,736	-				+0.1
1,031,749	+				-0.7
1,031,765	+				+0.6
1,031,765	+				+0.2
1,031,765	+				+0.3
1,031,765	+				-0.1
1,031,766	-				+0.1
1,031,766	-				+0.7
1,031,766	-				-0.2
1,031,766	-				-0.2
1,031,788	+				+1.5
1,031,789	-				+0.4
1,031,796	+				+0.8
1,031,796	+				+2.2
1,031,796	+				+1.2
1,031,796	+				-0.6
1,031,797	-				-0.3
1,031,797	-				+0.1
1,031,797	-				-0.9
1,031,800	+				+2.1
1,031,800	+				+1.1
1,031,803	+				+1.4
1,031,803	+				-0.4
1,031,803	+				-1.2
1,031,803	+				+0.4
1,031,804	-				-0.0
1,031,804	-				+0.5
1,031,804	-				+1.6
1,031,804	-				-0.8
1,031,839	+				+0.2
1,031,854	+				+0.0
1,031,854	+				-0.0
1,031,854	+				+0.6
1,031,854	+				+0.8
1,031,855	-				+0.8
1,031,855	-				+1.4
1,031,855	-				+1.0
1,031,855	-				+2.2
1,031,855	-				-0.0
1,031,858	+				+3.2
1,031,859	-				+1.6
1,031,859	-				-0.8
1,031,892	+				+0.1
1,031,892	+				+0.7
1,031,893	-				+0.8
1,031,893	-				-0.4
1,031,893	-				+0.7
1,031,893	-				+1.4
1,031,893	-				+0.4
1,031,926	+				-1.0
1,031,926	+				-1.3
1,031,926	+				+0.6
1,031,926	+				-0.6
1,031,926	+				+3.8
1,031,927	-				+0.0
1,031,927	-				-1.4
1,031,927	-				+0.6
1,031,927	-				+0.9
1,031,927	-				-0.5
1,031,927	-				-1.2
1,031,927	-				+0.0
1,031,927	-				-1.2
1,032,041	-				-1.5
1,032,044	+				+1.4
1,032,044	+				-1.7
1,032,044	+				+1.4
1,032,044	+				-0.6
1,032,044	+				+0.2
1,032,044	+				+0.6
1,032,044	+				-0.8
1,032,044	+				+0.1
1,032,044	+				-0.2
1,032,044	+				-1.1
1,032,044	+				-2.0
1,032,044	+				+0.8
1,032,044	+				+0.6
1,032,044	+				+0.3
1,032,044	+				+1.4
1,032,045	-				-0.5
1,032,045	-				-1.0
1,032,045	-				-1.2
1,032,045	-				+0.2
1,032,045	-				+1.4
1,032,045	-				-0.4
1,032,045	-				-1.3
1,032,045	-				-0.6
1,032,045	-				+0.3
1,032,045	-				-2.0
1,032,045	-				+0.3
1,032,045	-				+0.1
1,032,045	-				-0.1
1,032,045	-				-0.3
1,032,045	-				+1.4
1,032,045	-				+0.2
1,032,045	-				-0.4
1,032,045	-				+1.9
1,032,045	-				-1.2
1,032,045	-				-0.9
1,032,045	-				-1.5
1,032,045	-				-0.8
1,032,045	-				-2.6
1,032,045	-				-0.0
1,032,045	-				-1.8
1,032,045	-				+0.6
1,032,056	+				+1.1
1,032,056	+				+0.3
1,032,057	-				+1.6
1,032,144	-				-0.2
1,032,176	+				+1.7
1,032,262	+				+1.5
1,032,262	+				+2.0
1,032,262	+				+0.5
1,032,262	+				+0.6
1,032,262	+				-0.6
1,032,262	+				-0.0
1,032,262	+				-0.5
1,032,263	-				+1.9
1,032,263	-				+0.9
1,032,263	-				-1.6
1,032,263	-				+1.7
1,032,266	+				+1.6
1,032,266	+				-0.4
1,032,266	+				+1.2
1,032,266	+				+1.0
1,032,266	+				-0.1
1,032,266	+				-0.5
1,032,266	+				+0.8
1,032,266	+				+0.2
1,032,266	+				+0.6
1,032,266	+				+0.2
1,032,266	+				-0.3
1,032,266	+				-0.7
1,032,267	-				+0.8
1,032,267	-				+0.8
1,032,267	-				-1.1
1,032,267	-				+2.3
1,032,267	-				-0.1
1,032,267	-				-1.0
1,032,267	-				+0.1
1,032,267	-				+0.7
1,032,267	-				+0.9
1,032,278	-				-0.1
1,032,283	+				+0.2
1,032,284	-				+0.4
1,032,284	-				+0.5
1,032,284	-				-1.2
1,032,322	+				-0.5
1,032,322	+				+1.5
1,032,323	-				+0.0
1,032,323	-				+1.9
1,032,323	-				+0.9
1,032,329	+				-1.0
1,032,329	+				+0.4
1,032,330	-				+0.2
1,032,330	-				-0.5
1,032,330	-				+1.9
1,032,330	-				+1.3
1,032,330	-				-0.6
1,032,330	-				-0.1
1,032,352	+				+0.0
1,032,352	+				+0.1
1,032,352	+				-2.0
1,032,352	+				-2.3
1,032,352	+				+1.9
1,032,352	+				+2.6
1,032,352	+				-1.8
1,032,353	-				-1.8
1,032,353	-				+0.1
1,032,357	+				+0.4
1,032,357	+				+1.1
1,032,357	+				+2.6
1,032,357	+				+2.5
1,032,357	+				+2.9
1,032,357	+				+1.2
1,032,358	-				-0.2
1,032,358	-				+1.6
1,032,358	-				+0.3
1,032,358	-				-1.3
1,032,358	-				-0.3
1,032,358	-				+0.6
1,032,358	-				-0.2
1,032,358	-				+1.6
1,032,419	+				+0.4
1,032,419	+				+1.3
1,032,419	+				-0.0
1,032,420	-				-2.2
1,032,420	-				+0.6
1,032,420	-				+0.3
1,032,429	-				+0.8
1,032,448	+				+0.6
1,032,448	+				-0.1
1,032,448	+				+0.4
1,032,449	-				+2.6
1,032,449	-				-1.0
1,032,531	-		Psyr_0910	0.15	+0.9
1,032,531	-		Psyr_0910	0.15	+0.0