Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_RNA16 and Psyr_RNA17 are separated by 149 nucleotides Psyr_RNA17 and Psyr_0852 are separated by 124 nucleotides Psyr_0852 and Psyr_0853 are separated by 172 nucleotides
Psyr_RNA16: Psyr_RNA16 - 23S ribosomal RNA, at 966,773 to 969,675
_RNA16
Psyr_RNA17: Psyr_RNA17 - 5S ribosomal RNA, at 969,825 to 969,939
_RNA17
Psyr_0852: Psyr_0852 - pectate lyase, at 970,064 to 971,311
_0852
Psyr_0853: Psyr_0853 - conserved hypothetical protein, at 971,484 to 974,303
_0853
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 970.065 kb on + strand at 970.252 kb on + strand, within Psyr_0852 at 970.273 kb on - strand, within Psyr_0852 at 970.341 kb on + strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.393 kb on + strand, within Psyr_0852 at 970.394 kb on - strand, within Psyr_0852 at 970.407 kb on + strand, within Psyr_0852 at 970.407 kb on + strand, within Psyr_0852 at 970.408 kb on - strand, within Psyr_0852 at 970.408 kb on - strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.551 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.728 kb on + strand, within Psyr_0852 at 970.729 kb on - strand, within Psyr_0852 at 970.729 kb on - strand, within Psyr_0852 at 970.729 kb on - strand, within Psyr_0852 at 970.737 kb on + strand, within Psyr_0852 at 970.737 kb on + strand, within Psyr_0852 at 970.737 kb on + strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.757 kb on - strand, within Psyr_0852 at 970.771 kb on + strand, within Psyr_0852 at 970.771 kb on + strand, within Psyr_0852 at 970.772 kb on - strand, within Psyr_0852 at 970.772 kb on - strand, within Psyr_0852 at 970.837 kb on + strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.934 kb on + strand, within Psyr_0852 at 970.935 kb on - strand, within Psyr_0852 at 970.942 kb on + strand, within Psyr_0852 at 970.942 kb on + strand, within Psyr_0852 at 970.943 kb on - strand, within Psyr_0852 at 971.033 kb on + strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.090 kb on - strand, within Psyr_0852 at 971.090 kb on - strand, within Psyr_0852 at 971.090 kb on - strand, within Psyr_0852 at 971.121 kb on + strand, within Psyr_0852 at 971.121 kb on + strand, within Psyr_0852 at 971.122 kb on - strand, within Psyr_0852 at 971.122 kb on - strand, within Psyr_0852 at 971.127 kb on + strand, within Psyr_0852 at 971.128 kb on - strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.212 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.250 kb on + strand at 971.250 kb on + strand at 971.251 kb on - strand at 971.251 kb on - strand at 971.300 kb on + strand at 971.301 kb on - strand at 971.337 kb on + strand at 971.337 kb on + strand at 971.337 kb on + strand at 971.337 kb on + strand at 971.338 kb on - strand at 971.338 kb on - strand at 971.343 kb on + strand at 971.343 kb on + strand at 971.344 kb on - strand at 971.344 kb on - strand at 971.344 kb on - strand at 971.353 kb on + strand at 971.353 kb on + strand at 971.353 kb on + strand at 971.382 kb on - strand at 971.436 kb on - strand at 971.469 kb on + strand at 971.470 kb on - strand at 971.485 kb on + strand at 971.486 kb on - strand at 971.536 kb on + strand at 971.536 kb on + strand at 971.537 kb on - strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.565 kb on - strand at 971.565 kb on - strand at 971.565 kb on - strand at 971.565 kb on - strand at 971.719 kb on + strand at 971.719 kb on + strand at 971.719 kb on + strand at 971.720 kb on - strand at 971.720 kb on - strand at 971.720 kb on - strand at 971.722 kb on + strand at 971.722 kb on + strand at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.944 kb on + strand, within Psyr_0853 at 971.944 kb on + strand, within Psyr_0853 at 971.944 kb on + strand, within Psyr_0853 at 971.945 kb on - strand, within Psyr_0853 at 972.025 kb on + strand, within Psyr_0853 at 972.172 kb on + strand, within Psyr_0853 at 972.172 kb on + strand, within Psyr_0853 at 972.198 kb on - strand, within Psyr_0853 at 972.268 kb on + strand, within Psyr_0853 at 972.268 kb on + strand, within Psyr_0853 at 972.282 kb on + strand, within Psyr_0853 at 972.283 kb on - strand, within Psyr_0853 at 972.283 kb on - strand, within Psyr_0853
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 970,065 + +0.3 970,252 + Psyr_0852 0.15 -0.9 970,273 - Psyr_0852 0.17 +0.2 970,341 + Psyr_0852 0.22 +0.5 970,342 - Psyr_0852 0.22 +0.8 970,342 - Psyr_0852 0.22 +1.1 970,342 - Psyr_0852 0.22 -0.8 970,342 - Psyr_0852 0.22 -1.1 970,342 - Psyr_0852 0.22 +1.1 970,342 - Psyr_0852 0.22 +1.1 970,342 - Psyr_0852 0.22 -1.2 970,393 + Psyr_0852 0.26 -2.3 970,394 - Psyr_0852 0.26 -2.3 970,407 + Psyr_0852 0.27 +1.3 970,407 + Psyr_0852 0.27 +1.1 970,408 - Psyr_0852 0.28 -0.6 970,408 - Psyr_0852 0.28 -0.6 970,423 + Psyr_0852 0.29 +1.6 970,423 + Psyr_0852 0.29 +1.0 970,423 + Psyr_0852 0.29 -1.1 970,423 + Psyr_0852 0.29 -0.9 970,423 + Psyr_0852 0.29 -0.9 970,423 + Psyr_0852 0.29 -0.9 970,424 - Psyr_0852 0.29 +1.8 970,424 - Psyr_0852 0.29 -0.3 970,424 - Psyr_0852 0.29 -0.3 970,424 - Psyr_0852 0.29 +0.4 970,476 + Psyr_0852 0.33 -0.5 970,476 + Psyr_0852 0.33 +1.4 970,476 + Psyr_0852 0.33 +1.1 970,476 + Psyr_0852 0.33 +1.0 970,476 + Psyr_0852 0.33 +3.3 970,476 + Psyr_0852 0.33 +0.9 970,476 + Psyr_0852 0.33 -1.0 970,476 + Psyr_0852 0.33 +0.1 970,476 + Psyr_0852 0.33 -0.2 970,476 + Psyr_0852 0.33 +1.0 970,476 + Psyr_0852 0.33 +1.0 970,476 + Psyr_0852 0.33 +0.7 970,476 + Psyr_0852 0.33 +1.5 970,476 + Psyr_0852 0.33 +0.5 970,476 + Psyr_0852 0.33 +0.7 970,476 + Psyr_0852 0.33 -2.1 970,476 + Psyr_0852 0.33 -0.2 970,476 + Psyr_0852 0.33 +0.6 970,476 + Psyr_0852 0.33 +0.9 970,477 - Psyr_0852 0.33 -1.0 970,477 - Psyr_0852 0.33 -0.0 970,477 - Psyr_0852 0.33 -0.4 970,477 - Psyr_0852 0.33 -0.4 970,477 - Psyr_0852 0.33 +1.7 970,477 - Psyr_0852 0.33 +0.5 970,477 - Psyr_0852 0.33 -0.6 970,477 - Psyr_0852 0.33 -1.2 970,477 - Psyr_0852 0.33 +1.6 970,477 - Psyr_0852 0.33 -0.1 970,477 - Psyr_0852 0.33 -0.5 970,477 - Psyr_0852 0.33 +1.3 970,477 - Psyr_0852 0.33 +1.1 970,477 - Psyr_0852 0.33 -0.4 970,477 - Psyr_0852 0.33 +0.7 970,477 - Psyr_0852 0.33 -1.1 970,477 - Psyr_0852 0.33 -0.3 970,477 - Psyr_0852 0.33 +0.2 970,477 - Psyr_0852 0.33 -0.2 970,477 - Psyr_0852 0.33 +0.0 970,477 - Psyr_0852 0.33 -1.3 970,477 - Psyr_0852 0.33 +0.2 970,477 - Psyr_0852 0.33 -1.8 970,551 + Psyr_0852 0.39 +1.4 970,655 + Psyr_0852 0.47 +1.2 970,655 + Psyr_0852 0.47 +0.5 970,655 + Psyr_0852 0.47 +1.8 970,655 + Psyr_0852 0.47 -0.6 970,655 + Psyr_0852 0.47 -1.2 970,655 + Psyr_0852 0.47 +0.6 970,655 + Psyr_0852 0.47 +0.9 970,656 - Psyr_0852 0.47 +0.2 970,656 - Psyr_0852 0.47 -0.9 970,656 - Psyr_0852 0.47 -1.6 970,656 - Psyr_0852 0.47 +0.1 970,728 + Psyr_0852 0.53 -2.2 970,729 - Psyr_0852 0.53 -0.8 970,729 - Psyr_0852 0.53 -1.4 970,729 - Psyr_0852 0.53 -0.8 970,737 + Psyr_0852 0.54 +2.3 970,737 + Psyr_0852 0.54 +0.2 970,737 + Psyr_0852 0.54 +2.1 970,738 - Psyr_0852 0.54 -0.7 970,738 - Psyr_0852 0.54 +0.2 970,738 - Psyr_0852 0.54 +0.7 970,738 - Psyr_0852 0.54 -1.9 970,738 - Psyr_0852 0.54 +0.2 970,738 - Psyr_0852 0.54 +0.1 970,738 - Psyr_0852 0.54 +0.5 970,738 - Psyr_0852 0.54 +1.2 970,757 - Psyr_0852 0.56 +0.6 970,771 + Psyr_0852 0.57 +2.2 970,771 + Psyr_0852 0.57 -1.4 970,772 - Psyr_0852 0.57 -1.5 970,772 - Psyr_0852 0.57 +0.8 970,837 + Psyr_0852 0.62 +1.1 970,838 - Psyr_0852 0.62 +0.5 970,838 - Psyr_0852 0.62 -0.7 970,838 - Psyr_0852 0.62 +1.8 970,838 - Psyr_0852 0.62 +0.1 970,934 + Psyr_0852 0.70 -2.1 970,935 - Psyr_0852 0.70 +1.3 970,942 + Psyr_0852 0.70 +2.8 970,942 + Psyr_0852 0.70 +1.0 970,943 - Psyr_0852 0.70 +1.6 971,033 + Psyr_0852 0.78 +0.8 971,034 - Psyr_0852 0.78 +1.7 971,034 - Psyr_0852 0.78 +0.2 971,034 - Psyr_0852 0.78 -0.3 971,034 - Psyr_0852 0.78 -0.3 971,035 + Psyr_0852 0.78 -0.2 971,035 + Psyr_0852 0.78 -2.7 971,035 + Psyr_0852 0.78 -2.8 971,035 + Psyr_0852 0.78 -0.6 971,035 + Psyr_0852 0.78 +0.1 971,036 - Psyr_0852 0.78 -0.8 971,036 - Psyr_0852 0.78 +1.2 971,036 - Psyr_0852 0.78 +2.5 971,036 - Psyr_0852 0.78 -0.6 971,036 - Psyr_0852 0.78 -1.4 971,036 - Psyr_0852 0.78 +1.4 971,036 - Psyr_0852 0.78 -0.5 971,036 - Psyr_0852 0.78 +2.1 971,090 - Psyr_0852 0.82 +1.4 971,090 - Psyr_0852 0.82 -1.1 971,090 - Psyr_0852 0.82 +0.2 971,121 + Psyr_0852 0.85 +1.3 971,121 + Psyr_0852 0.85 +1.8 971,122 - Psyr_0852 0.85 -0.0 971,122 - Psyr_0852 0.85 -0.7 971,127 + Psyr_0852 0.85 +1.8 971,128 - Psyr_0852 0.85 +1.8 971,145 + Psyr_0852 0.87 -0.7 971,145 + Psyr_0852 0.87 +2.9 971,145 + Psyr_0852 0.87 -2.3 971,145 + Psyr_0852 0.87 -1.1 971,212 + +0.8 971,247 + -1.7 971,247 + -1.9 971,247 + +1.5 971,247 + -1.4 971,247 + +0.4 971,247 + -2.2 971,247 + +2.9 971,247 + -0.1 971,247 + -0.1 971,247 + -1.7 971,247 + -1.2 971,248 - +0.4 971,248 - +0.4 971,248 - +0.2 971,248 - +0.9 971,248 - -0.3 971,248 - +0.5 971,248 - -1.3 971,248 - +1.1 971,248 - +0.0 971,248 - -0.2 971,250 + +0.8 971,250 + +0.0 971,251 - +0.4 971,251 - +2.4 971,300 + -0.5 971,301 - +0.2 971,337 + -1.2 971,337 + +1.2 971,337 + +0.3 971,337 + +0.8 971,338 - -0.1 971,338 - -2.9 971,343 + +0.2 971,343 + +0.0 971,344 - -0.7 971,344 - -0.3 971,344 - +1.3 971,353 + +0.0 971,353 + +0.7 971,353 + -0.2 971,382 - +2.9 971,436 - -0.9 971,469 + +0.1 971,470 - +1.4 971,485 + -0.3 971,486 - +1.4 971,536 + +0.1 971,536 + -1.1 971,537 - +0.0 971,560 + -1.6 971,560 + -0.6 971,560 + +0.4 971,560 + +0.7 971,560 + -1.0 971,560 + +1.2 971,561 - +1.4 971,561 - +1.7 971,561 - -1.4 971,561 - +0.2 971,561 - +1.5 971,561 - -2.0 971,564 + -0.7 971,564 + -1.7 971,564 + -0.4 971,564 + +0.7 971,564 + -2.0 971,565 - +1.7 971,565 - -2.4 971,565 - -1.5 971,565 - -1.1 971,719 + +0.8 971,719 + -0.7 971,719 + +0.9 971,720 - -0.9 971,720 - -0.7 971,720 - +2.1 971,722 + -0.8 971,722 + -0.6 971,776 + Psyr_0853 0.10 -0.9 971,776 + Psyr_0853 0.10 -0.1 971,776 + Psyr_0853 0.10 +0.3 971,776 + Psyr_0853 0.10 -0.3 971,776 + Psyr_0853 0.10 -0.5 971,776 + Psyr_0853 0.10 -0.4 971,776 + Psyr_0853 0.10 -0.7 971,777 - Psyr_0853 0.10 -0.9 971,777 - Psyr_0853 0.10 +0.1 971,777 - Psyr_0853 0.10 -1.6 971,777 - Psyr_0853 0.10 -0.4 971,777 - Psyr_0853 0.10 +0.1 971,777 - Psyr_0853 0.10 +1.4 971,944 + Psyr_0853 0.16 +1.4 971,944 + Psyr_0853 0.16 -0.3 971,944 + Psyr_0853 0.16 -0.2 971,945 - Psyr_0853 0.16 +1.1 972,025 + Psyr_0853 0.19 -1.6 972,172 + Psyr_0853 0.24 -1.1 972,172 + Psyr_0853 0.24 +0.2 972,198 - Psyr_0853 0.25 -2.4 972,268 + Psyr_0853 0.28 -0.2 972,268 + Psyr_0853 0.28 -0.6 972,282 + Psyr_0853 0.28 -3.2 972,283 - Psyr_0853 0.28 +0.0 972,283 - Psyr_0853 0.28 +1.0
Or see this region's nucleotide sequence