Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0701 and Psyr_0702 are separated by 32 nucleotides Psyr_0702 and Psyr_0703 are separated by 216 nucleotides Psyr_0703 and Psyr_0704 are separated by 89 nucleotides
Psyr_0701: Psyr_0701 - LSU ribosomal protein L21P, at 804,786 to 805,097
_0701
Psyr_0702: Psyr_0702 - LSU ribosomal protein L27P, at 805,130 to 805,405
_0702
Psyr_0703: Psyr_0703 - GTP-binding protein, HSR1-related:GTP1/OBG subdomain protein, at 805,622 to 806,845
_0703
Psyr_0704: Psyr_0704 - glutamate 5-kinase, at 806,935 to 808,053
_0704
Position (kb) 805
806
807 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 804.688 kb on + strand at 805.455 kb on + strand at 805.461 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.573 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.577 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand at 805.582 kb on + strand at 806.831 kb on + strand at 806.831 kb on + strand at 806.831 kb on + strand at 806.831 kb on + strand at 806.856 kb on + strand at 806.857 kb on - strand at 806.881 kb on + strand at 806.882 kb on - strand at 807.237 kb on + strand, within Psyr_0704 at 807.237 kb on + strand, within Psyr_0704 at 807.238 kb on - strand, within Psyr_0704 at 807.512 kb on - strand, within Psyr_0704 at 807.636 kb on + strand, within Psyr_0704 at 807.636 kb on + strand, within Psyr_0704
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 804,688 + +0.8 805,455 + +1.6 805,461 + -0.6 805,573 + +1.3 805,573 + +0.5 805,573 + -0.6 805,573 + +0.5 805,573 + -0.2 805,577 + +1.4 805,577 + +1.1 805,577 + -0.3 805,577 + +0.6 805,577 + +2.0 805,582 + +0.6 805,582 + +0.2 805,582 + +0.6 805,582 + -2.8 805,582 + -0.4 806,831 + +0.3 806,831 + +1.1 806,831 + +0.1 806,831 + +0.6 806,856 + -1.6 806,857 - +1.5 806,881 + +1.2 806,882 - -1.9 807,237 + Psyr_0704 0.27 -1.4 807,237 + Psyr_0704 0.27 -2.6 807,238 - Psyr_0704 0.27 +1.7 807,512 - Psyr_0704 0.52 -1.2 807,636 + Psyr_0704 0.63 -4.3 807,636 + Psyr_0704 0.63 -2.7
Or see this region's nucleotide sequence