Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_919

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_918 and Pf1N1B4_919 are separated by 46 nucleotidesPf1N1B4_919 and Pf1N1B4_920 are separated by 6 nucleotides Pf1N1B4_918 - phospholipase/carboxylesterase family protein, at 1,043,850 to 1,044,506 _918 Pf1N1B4_919 - hypothetical protein, at 1,044,553 to 1,044,741 _919 Pf1N1B4_920 - ATP-dependent RNA helicase RhlB, at 1,044,748 to 1,046,079 _920 Position (kb) 1044 1045Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1043.565 kb on - strandat 1043.565 kb on - strandat 1043.646 kb on + strandat 1043.646 kb on + strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.647 kb on - strandat 1043.654 kb on + strandat 1043.654 kb on + strandat 1043.655 kb on - strandat 1043.655 kb on - strandat 1043.655 kb on - strandat 1043.655 kb on - strandat 1043.655 kb on - strandat 1043.655 kb on - strandat 1043.655 kb on - strandat 1043.670 kb on + strandat 1043.671 kb on - strandat 1043.671 kb on - strandat 1043.671 kb on - strandat 1043.671 kb on - strandat 1043.671 kb on - strandat 1043.780 kb on + strandat 1043.781 kb on - strandat 1043.794 kb on - strandat 1043.794 kb on - strandat 1043.794 kb on - strandat 1043.817 kb on + strandat 1043.818 kb on - strandat 1043.818 kb on - strandat 1043.818 kb on - strandat 1043.818 kb on - strandat 1043.993 kb on - strand, within Pf1N1B4_918at 1044.051 kb on + strand, within Pf1N1B4_918at 1044.058 kb on + strand, within Pf1N1B4_918at 1044.059 kb on - strand, within Pf1N1B4_918at 1044.059 kb on - strand, within Pf1N1B4_918at 1044.059 kb on - strand, within Pf1N1B4_918at 1044.059 kb on - strand, within Pf1N1B4_918at 1044.158 kb on - strand, within Pf1N1B4_918at 1044.158 kb on - strand, within Pf1N1B4_918at 1044.208 kb on + strand, within Pf1N1B4_918at 1044.209 kb on - strand, within Pf1N1B4_918at 1044.209 kb on - strand, within Pf1N1B4_918at 1044.253 kb on + strand, within Pf1N1B4_918at 1044.253 kb on + strand, within Pf1N1B4_918at 1044.254 kb on - strand, within Pf1N1B4_918at 1044.254 kb on - strand, within Pf1N1B4_918at 1044.254 kb on - strand, within Pf1N1B4_918at 1044.254 kb on - strand, within Pf1N1B4_918at 1044.270 kb on + strand, within Pf1N1B4_918at 1044.270 kb on + strand, within Pf1N1B4_918at 1044.271 kb on - strand, within Pf1N1B4_918at 1044.271 kb on - strand, within Pf1N1B4_918at 1044.348 kb on + strandat 1044.348 kb on + strand, within Pf1N1B4_918at 1044.349 kb on - strand, within Pf1N1B4_918at 1044.394 kb on - strand, within Pf1N1B4_918at 1044.397 kb on + strand, within Pf1N1B4_918at 1044.397 kb on + strand, within Pf1N1B4_918at 1044.397 kb on + strand, within Pf1N1B4_918at 1044.397 kb on + strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strand, within Pf1N1B4_918at 1044.398 kb on - strandat 1044.398 kb on - strand, within Pf1N1B4_918at 1044.512 kb on - strandat 1044.512 kb on - strandat 1044.532 kb on - strandat 1044.532 kb on - strandat 1044.554 kb on + strandat 1044.554 kb on + strandat 1044.554 kb on + strandat 1044.555 kb on - strandat 1044.555 kb on - strandat 1044.555 kb on - strandat 1044.555 kb on - strandat 1044.555 kb on - strandat 1044.555 kb on - strandat 1044.568 kb on + strandat 1044.569 kb on - strandat 1044.569 kb on - strandat 1044.569 kb on - strandat 1044.569 kb on - strandat 1044.570 kb on + strandat 1044.571 kb on - strandat 1044.571 kb on - strandat 1044.571 kb on - strandat 1044.571 kb on - strandat 1044.571 kb on - strandat 1044.571 kb on - strandat 1044.628 kb on - strand, within Pf1N1B4_919at 1044.628 kb on - strand, within Pf1N1B4_919at 1044.675 kb on + strand, within Pf1N1B4_919at 1044.675 kb on + strand, within Pf1N1B4_919at 1044.974 kb on - strand, within Pf1N1B4_920at 1045.123 kb on + strand, within Pf1N1B4_920at 1045.123 kb on + strand, within Pf1N1B4_920at 1045.123 kb on + strand, within Pf1N1B4_920at 1045.124 kb on - strand, within Pf1N1B4_920at 1045.124 kb on - strand, within Pf1N1B4_920at 1045.124 kb on - strand, within Pf1N1B4_920at 1045.210 kb on + strand, within Pf1N1B4_920at 1045.210 kb on + strand, within Pf1N1B4_920at 1045.210 kb on + strand, within Pf1N1B4_920at 1045.210 kb on + strand, within Pf1N1B4_920at 1045.210 kb on + strand, within Pf1N1B4_920at 1045.210 kb on + strand, within Pf1N1B4_920at 1045.210 kb on + strandat 1045.211 kb on - strand, within Pf1N1B4_920at 1045.211 kb on - strand, within Pf1N1B4_920at 1045.211 kb on - strand, within Pf1N1B4_920at 1045.211 kb on - strand, within Pf1N1B4_920at 1045.591 kb on + strand, within Pf1N1B4_920at 1045.591 kb on + strand, within Pf1N1B4_920at 1045.591 kb on + strand, within Pf1N1B4_920at 1045.591 kb on + strand, within Pf1N1B4_920at 1045.591 kb on + strand, within Pf1N1B4_920at 1045.591 kb on + strand, within Pf1N1B4_920at 1045.591 kb on + strandat 1045.591 kb on + strand, within Pf1N1B4_920at 1045.591 kb on + strand, within Pf1N1B4_920at 1045.592 kb on - strand, within Pf1N1B4_920at 1045.592 kb on - strand, within Pf1N1B4_920at 1045.592 kb on - strand, within Pf1N1B4_920at 1045.592 kb on - strand, within Pf1N1B4_920at 1045.615 kb on + strand, within Pf1N1B4_920at 1045.615 kb on + strand, within Pf1N1B4_920at 1045.615 kb on + strand, within Pf1N1B4_920at 1045.615 kb on + strand, within Pf1N1B4_920at 1045.616 kb on - strand, within Pf1N1B4_920at 1045.616 kb on - strand, within Pf1N1B4_920at 1045.616 kb on - strand, within Pf1N1B4_920at 1045.616 kb on - strand, within Pf1N1B4_920at 1045.627 kb on + strand, within Pf1N1B4_920at 1045.627 kb on + strand, within Pf1N1B4_920at 1045.628 kb on - strand, within Pf1N1B4_920at 1045.715 kb on + strand, within Pf1N1B4_920at 1045.715 kb on + strand, within Pf1N1B4_920at 1045.716 kb on - strand, within Pf1N1B4_920at 1045.716 kb on - strand, within Pf1N1B4_920at 1045.716 kb on - strand, within Pf1N1B4_920at 1045.716 kb on - strand, within Pf1N1B4_920

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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1,043,565 - +3.0
1,043,565 - +0.2
1,043,646 + -0.4
1,043,646 + -0.0
1,043,647 - -0.5
1,043,647 - +1.4
1,043,647 - +0.7
1,043,647 - -0.1
1,043,647 - +0.4
1,043,647 - -0.0
1,043,647 - +0.3
1,043,647 - -0.2
1,043,647 - +0.1
1,043,647 - +1.0
1,043,654 + -1.0
1,043,654 + -2.2
1,043,655 - +0.2
1,043,655 - +0.2
1,043,655 - -0.0
1,043,655 - -1.5
1,043,655 - +0.7
1,043,655 - +1.0
1,043,655 - +0.5
1,043,670 + -1.0
1,043,671 - -1.0
1,043,671 - +0.9
1,043,671 - +0.6
1,043,671 - -0.5
1,043,671 - -0.4
1,043,780 + -1.4
1,043,781 - +2.3
1,043,794 - +0.7
1,043,794 - +0.1
1,043,794 - +1.4
1,043,817 + +1.2
1,043,818 - +0.5
1,043,818 - -0.0
1,043,818 - -0.0
1,043,818 - +0.5
1,043,993 - Pf1N1B4_918 0.22 +0.4
1,044,051 + Pf1N1B4_918 0.31 +0.1
1,044,058 + Pf1N1B4_918 0.32 +1.0
1,044,059 - Pf1N1B4_918 0.32 +0.5
1,044,059 - Pf1N1B4_918 0.32 -0.5
1,044,059 - Pf1N1B4_918 0.32 +1.0
1,044,059 - Pf1N1B4_918 0.32 -0.5
1,044,158 - Pf1N1B4_918 0.47 +0.4
1,044,158 - Pf1N1B4_918 0.47 +0.5
1,044,208 + Pf1N1B4_918 0.54 +0.2
1,044,209 - Pf1N1B4_918 0.55 -0.0
1,044,209 - Pf1N1B4_918 0.55 +0.4
1,044,253 + Pf1N1B4_918 0.61 -1.6
1,044,253 + Pf1N1B4_918 0.61 +0.2
1,044,254 - Pf1N1B4_918 0.61 +1.4
1,044,254 - Pf1N1B4_918 0.61 +1.0
1,044,254 - Pf1N1B4_918 0.61 +1.0
1,044,254 - Pf1N1B4_918 0.61 +0.7
1,044,270 + Pf1N1B4_918 0.64 +0.6
1,044,270 + Pf1N1B4_918 0.64 -0.4
1,044,271 - Pf1N1B4_918 0.64 +0.0
1,044,271 - Pf1N1B4_918 0.64 -0.3
1,044,348 + +1.0
1,044,348 + Pf1N1B4_918 0.76 -1.0
1,044,349 - Pf1N1B4_918 0.76 -0.9
1,044,394 - Pf1N1B4_918 0.83 -0.2
1,044,397 + Pf1N1B4_918 0.83 +1.2
1,044,397 + Pf1N1B4_918 0.83 -0.4
1,044,397 + Pf1N1B4_918 0.83 +0.2
1,044,397 + Pf1N1B4_918 0.83 +0.0
1,044,398 - Pf1N1B4_918 0.83 -0.2
1,044,398 - Pf1N1B4_918 0.83 -1.5
1,044,398 - Pf1N1B4_918 0.83 +0.2
1,044,398 - Pf1N1B4_918 0.83 +0.0
1,044,398 - Pf1N1B4_918 0.83 +0.5
1,044,398 - Pf1N1B4_918 0.83 -0.8
1,044,398 - Pf1N1B4_918 0.83 -0.4
1,044,398 - Pf1N1B4_918 0.83 -1.0
1,044,398 - Pf1N1B4_918 0.83 +0.8
1,044,398 - Pf1N1B4_918 0.83 -0.3
1,044,398 - Pf1N1B4_918 0.83 -0.4
1,044,398 - -0.0
1,044,398 - Pf1N1B4_918 0.83 +1.5
1,044,512 - +1.0
1,044,512 - -0.3
1,044,532 - -1.0
1,044,532 - +1.3
1,044,554 + -0.3
1,044,554 + -1.7
1,044,554 + -0.9
1,044,555 - +0.8
1,044,555 - +0.8
1,044,555 - -1.7
1,044,555 - -1.0
1,044,555 - +0.6
1,044,555 - -1.0
1,044,568 + +1.5
1,044,569 - -0.0
1,044,569 - -1.8
1,044,569 - +1.3
1,044,569 - -0.2
1,044,570 + +0.5
1,044,571 - -0.0
1,044,571 - -0.5
1,044,571 - +0.4
1,044,571 - +0.1
1,044,571 - -0.6
1,044,571 - +3.5
1,044,628 - Pf1N1B4_919 0.40 -1.0
1,044,628 - Pf1N1B4_919 0.40 -0.5
1,044,675 + Pf1N1B4_919 0.65 -0.7
1,044,675 + Pf1N1B4_919 0.65 -1.0
1,044,974 - Pf1N1B4_920 0.17 -1.5
1,045,123 + Pf1N1B4_920 0.28 +1.2
1,045,123 + Pf1N1B4_920 0.28 -0.0
1,045,123 + Pf1N1B4_920 0.28 -0.0
1,045,124 - Pf1N1B4_920 0.28 -0.0
1,045,124 - Pf1N1B4_920 0.28 +0.5
1,045,124 - Pf1N1B4_920 0.28 -0.2
1,045,210 + Pf1N1B4_920 0.35 +0.6
1,045,210 + Pf1N1B4_920 0.35 +1.5
1,045,210 + Pf1N1B4_920 0.35 -0.6
1,045,210 + Pf1N1B4_920 0.35 +0.7
1,045,210 + Pf1N1B4_920 0.35 -0.0
1,045,210 + Pf1N1B4_920 0.35 -0.5
1,045,210 + -0.0
1,045,211 - Pf1N1B4_920 0.35 -0.0
1,045,211 - Pf1N1B4_920 0.35 +2.2
1,045,211 - Pf1N1B4_920 0.35 -1.7
1,045,211 - Pf1N1B4_920 0.35 +1.0
1,045,591 + Pf1N1B4_920 0.63 -1.6
1,045,591 + Pf1N1B4_920 0.63 -1.4
1,045,591 + Pf1N1B4_920 0.63 -2.4
1,045,591 + Pf1N1B4_920 0.63 -0.3
1,045,591 + Pf1N1B4_920 0.63 +0.2
1,045,591 + Pf1N1B4_920 0.63 -1.1
1,045,591 + +1.4
1,045,591 + Pf1N1B4_920 0.63 -1.4
1,045,591 + Pf1N1B4_920 0.63 +2.3
1,045,592 - Pf1N1B4_920 0.63 +1.5
1,045,592 - Pf1N1B4_920 0.63 -0.6
1,045,592 - Pf1N1B4_920 0.63 +0.6
1,045,592 - Pf1N1B4_920 0.63 -0.9
1,045,615 + Pf1N1B4_920 0.65 -0.6
1,045,615 + Pf1N1B4_920 0.65 -0.4
1,045,615 + Pf1N1B4_920 0.65 +1.2
1,045,615 + Pf1N1B4_920 0.65 +0.2
1,045,616 - Pf1N1B4_920 0.65 -1.0
1,045,616 - Pf1N1B4_920 0.65 +1.2
1,045,616 - Pf1N1B4_920 0.65 -1.0
1,045,616 - Pf1N1B4_920 0.65 -0.8
1,045,627 + Pf1N1B4_920 0.66 +1.0
1,045,627 + Pf1N1B4_920 0.66 -0.0
1,045,628 - Pf1N1B4_920 0.66 +2.1
1,045,715 + Pf1N1B4_920 0.73 -1.8
1,045,715 + Pf1N1B4_920 0.73 -0.0
1,045,716 - Pf1N1B4_920 0.73 -0.0
1,045,716 - Pf1N1B4_920 0.73 -1.6
1,045,716 - Pf1N1B4_920 0.73 -0.2
1,045,716 - Pf1N1B4_920 0.73 -0.6

Or see this region's nucleotide sequence