Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_367

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_365 and Pf1N1B4_366 are separated by 12 nucleotidesPf1N1B4_366 and Pf1N1B4_367 are separated by 189 nucleotidesPf1N1B4_367 and Pf1N1B4_368 overlap by 46 nucleotidesPf1N1B4_368 and Pf1N1B4_369 are separated by 53 nucleotides Pf1N1B4_365 - Cell division protein BolA, at 434,276 to 434,575 _365 Pf1N1B4_366 - FIG00954136: hypothetical protein, at 434,588 to 435,109 _366 Pf1N1B4_367 - Fumarate hydratase class II (EC 4.2.1.2), at 435,299 to 436,696 _367 Pf1N1B4_368 - hypothetical protein, at 436,651 to 436,782 _368 Pf1N1B4_369 - membrane protein, putative, at 436,836 to 437,798 _369 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3at 434.349 kb on + strand, within Pf1N1B4_365at 434.349 kb on + strand, within Pf1N1B4_365at 434.349 kb on + strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.403 kb on + strand, within Pf1N1B4_365at 434.404 kb on - strand, within Pf1N1B4_365at 434.404 kb on - strand, within Pf1N1B4_365at 434.590 kb on - strandat 434.620 kb on + strandat 434.761 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.764 kb on - strand, within Pf1N1B4_366at 434.764 kb on - strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strandat 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strandat 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 435.085 kb on + strandat 435.124 kb on + strandat 435.124 kb on + strandat 435.124 kb on + strandat 435.125 kb on - strandat 435.166 kb on - strandat 435.209 kb on + strandat 435.210 kb on - strandat 435.210 kb on - strandat 435.268 kb on - strandat 435.286 kb on + strandat 435.287 kb on - strandat 435.287 kb on - strandat 435.336 kb on + strandat 435.337 kb on - strandat 435.337 kb on - strandat 435.356 kb on + strandat 435.854 kb on - strand, within Pf1N1B4_367at 435.859 kb on + strand, within Pf1N1B4_367at 435.859 kb on + strand, within Pf1N1B4_367at 435.859 kb on + strand, within Pf1N1B4_367at 435.859 kb on + strand, within Pf1N1B4_367at 435.860 kb on - strand, within Pf1N1B4_367at 435.880 kb on + strand, within Pf1N1B4_367at 435.881 kb on - strand, within Pf1N1B4_367at 435.881 kb on - strand, within Pf1N1B4_367at 435.881 kb on - strand, within Pf1N1B4_367at 436.073 kb on - strand, within Pf1N1B4_367at 436.084 kb on + strand, within Pf1N1B4_367at 436.084 kb on + strand, within Pf1N1B4_367at 436.084 kb on + strand, within Pf1N1B4_367at 436.439 kb on - strand, within Pf1N1B4_367at 436.580 kb on + strandat 436.580 kb on + strandat 436.580 kb on + strandat 436.580 kb on + strandat 436.580 kb on + strandat 436.580 kb on + strandat 436.581 kb on - strandat 436.581 kb on - strandat 436.626 kb on - strandat 436.669 kb on + strandat 436.669 kb on + strandat 436.669 kb on + strandat 436.669 kb on + strandat 436.670 kb on - strandat 436.670 kb on - strandat 436.774 kb on + strandat 436.838 kb on - strandat 436.975 kb on + strand, within Pf1N1B4_369at 436.975 kb on + strand, within Pf1N1B4_369at 436.976 kb on - strand, within Pf1N1B4_369at 436.976 kb on - strand, within Pf1N1B4_369at 436.976 kb on - strand, within Pf1N1B4_369at 436.976 kb on - strand, within Pf1N1B4_369at 436.987 kb on - strand, within Pf1N1B4_369at 437.096 kb on - strandat 437.210 kb on - strand, within Pf1N1B4_369at 437.210 kb on - strand, within Pf1N1B4_369at 437.210 kb on - strand, within Pf1N1B4_369at 437.210 kb on - strand, within Pf1N1B4_369at 437.272 kb on + strand, within Pf1N1B4_369at 437.273 kb on - strandat 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.273 kb on - strand, within Pf1N1B4_369at 437.323 kb on + strand, within Pf1N1B4_369at 437.324 kb on - strand, within Pf1N1B4_369at 437.324 kb on - strand, within Pf1N1B4_369at 437.324 kb on - strand, within Pf1N1B4_369at 437.524 kb on - strandat 437.524 kb on - strand, within Pf1N1B4_369at 437.524 kb on - strand, within Pf1N1B4_369at 437.527 kb on + strand, within Pf1N1B4_369at 437.528 kb on - strand, within Pf1N1B4_369at 437.528 kb on - strand, within Pf1N1B4_369at 437.536 kb on + strand, within Pf1N1B4_369at 437.536 kb on + strand, within Pf1N1B4_369at 437.537 kb on - strand, within Pf1N1B4_369at 437.537 kb on - strand, within Pf1N1B4_369at 437.537 kb on - strand, within Pf1N1B4_369at 437.537 kb on - strand, within Pf1N1B4_369at 437.537 kb on - strand, within Pf1N1B4_369at 437.537 kb on - strand, within Pf1N1B4_369at 437.633 kb on - strand, within Pf1N1B4_369at 437.633 kb on - strand, within Pf1N1B4_369

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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434,349 + Pf1N1B4_365 0.24 -0.6
434,349 + Pf1N1B4_365 0.24 -0.2
434,349 + Pf1N1B4_365 0.24 -0.9
434,350 - Pf1N1B4_365 0.25 -1.2
434,350 - Pf1N1B4_365 0.25 +0.7
434,350 - Pf1N1B4_365 0.25 -1.0
434,350 - Pf1N1B4_365 0.25 -2.6
434,350 - Pf1N1B4_365 0.25 +0.8
434,350 - Pf1N1B4_365 0.25 +1.3
434,350 - Pf1N1B4_365 0.25 +1.3
434,350 - Pf1N1B4_365 0.25 +0.6
434,350 - Pf1N1B4_365 0.25 +0.8
434,350 - Pf1N1B4_365 0.25 +0.5
434,350 - Pf1N1B4_365 0.25 -0.2
434,350 - Pf1N1B4_365 0.25 -0.5
434,350 - Pf1N1B4_365 0.25 +1.3
434,403 + Pf1N1B4_365 0.42 -0.8
434,404 - Pf1N1B4_365 0.43 -1.1
434,404 - Pf1N1B4_365 0.43 +0.8
434,590 - +0.3
434,620 + -0.6
434,761 + Pf1N1B4_366 0.33 -1.8
434,763 + Pf1N1B4_366 0.34 -0.6
434,763 + Pf1N1B4_366 0.34 +0.3
434,763 + Pf1N1B4_366 0.34 -0.6
434,763 + Pf1N1B4_366 0.34 -1.7
434,764 - Pf1N1B4_366 0.34 +1.0
434,764 - Pf1N1B4_366 0.34 -0.6
434,811 + Pf1N1B4_366 0.43 +0.1
434,811 + Pf1N1B4_366 0.43 +0.3
434,811 + Pf1N1B4_366 0.43 -1.1
434,811 + Pf1N1B4_366 0.43 +0.8
434,812 - Pf1N1B4_366 0.43 +0.5
434,812 - Pf1N1B4_366 0.43 +0.8
434,812 - Pf1N1B4_366 0.43 -0.8
434,812 - Pf1N1B4_366 0.43 -0.8
434,812 - Pf1N1B4_366 0.43 -1.1
434,812 - Pf1N1B4_366 0.43 +0.0
434,886 + Pf1N1B4_366 0.57 +0.0
434,886 + +0.8
434,886 + Pf1N1B4_366 0.57 +0.1
434,886 + Pf1N1B4_366 0.57 +0.1
434,886 + Pf1N1B4_366 0.57 +1.5
434,886 + +1.4
434,887 - Pf1N1B4_366 0.57 +0.2
434,887 - Pf1N1B4_366 0.57 +0.9
434,887 - Pf1N1B4_366 0.57 +0.4
434,887 - Pf1N1B4_366 0.57 +0.1
434,887 - Pf1N1B4_366 0.57 +1.5
434,887 - Pf1N1B4_366 0.57 +0.2
434,887 - Pf1N1B4_366 0.57 -0.1
434,887 - Pf1N1B4_366 0.57 +2.1
434,967 + Pf1N1B4_366 0.73 -1.1
434,967 + Pf1N1B4_366 0.73 -1.0
434,967 + Pf1N1B4_366 0.73 +0.6
434,967 + Pf1N1B4_366 0.73 -2.0
434,967 + Pf1N1B4_366 0.73 +0.4
434,967 + Pf1N1B4_366 0.73 +0.0
434,967 + Pf1N1B4_366 0.73 -1.2
434,967 + Pf1N1B4_366 0.73 +0.0
434,967 + Pf1N1B4_366 0.73 +0.7
434,967 + Pf1N1B4_366 0.73 -0.8
434,967 + Pf1N1B4_366 0.73 +0.5
434,967 + Pf1N1B4_366 0.73 +0.7
434,968 - Pf1N1B4_366 0.73 +0.2
434,968 - Pf1N1B4_366 0.73 +0.4
434,968 - Pf1N1B4_366 0.73 +0.4
434,968 - Pf1N1B4_366 0.73 -2.0
435,085 + -0.8
435,124 + +0.4
435,124 + -0.8
435,124 + -1.5
435,125 - -0.2
435,166 - +0.8
435,209 + +1.0
435,210 - +0.2
435,210 - -0.8
435,268 - -0.8
435,286 + -0.2
435,287 - -1.2
435,287 - -1.1
435,336 + -1.6
435,337 - -1.8
435,337 - -0.6
435,356 + -0.2
435,854 - Pf1N1B4_367 0.40 -0.6
435,859 + Pf1N1B4_367 0.40 -0.8
435,859 + Pf1N1B4_367 0.40 +2.8
435,859 + Pf1N1B4_367 0.40 -0.2
435,859 + Pf1N1B4_367 0.40 -1.6
435,860 - Pf1N1B4_367 0.40 -0.3
435,880 + Pf1N1B4_367 0.42 -1.6
435,881 - Pf1N1B4_367 0.42 -2.7
435,881 - Pf1N1B4_367 0.42 -0.8
435,881 - Pf1N1B4_367 0.42 -2.4
436,073 - Pf1N1B4_367 0.55 -1.3
436,084 + Pf1N1B4_367 0.56 +2.3
436,084 + Pf1N1B4_367 0.56 +0.8
436,084 + Pf1N1B4_367 0.56 -0.6
436,439 - Pf1N1B4_367 0.82 +0.0
436,580 + -1.6
436,580 + +0.2
436,580 + +0.8
436,580 + -1.4
436,580 + +0.2
436,580 + -0.2
436,581 - -1.1
436,581 - +0.2
436,626 - -2.4
436,669 + +0.2
436,669 + -1.1
436,669 + -0.7
436,669 + -0.8
436,670 - -1.1
436,670 - -0.1
436,774 + -0.2
436,838 - +2.3
436,975 + Pf1N1B4_369 0.14 +0.2
436,975 + Pf1N1B4_369 0.14 -0.2
436,976 - Pf1N1B4_369 0.15 -1.8
436,976 - Pf1N1B4_369 0.15 -0.8
436,976 - Pf1N1B4_369 0.15 -0.7
436,976 - Pf1N1B4_369 0.15 -0.2
436,987 - Pf1N1B4_369 0.16 +0.5
437,096 - -0.8
437,210 - Pf1N1B4_369 0.39 -0.8
437,210 - Pf1N1B4_369 0.39 +0.0
437,210 - Pf1N1B4_369 0.39 +1.0
437,210 - Pf1N1B4_369 0.39 +0.1
437,272 + Pf1N1B4_369 0.45 +0.3
437,273 - -1.1
437,273 - Pf1N1B4_369 0.45 +0.6
437,273 - Pf1N1B4_369 0.45 -0.5
437,273 - Pf1N1B4_369 0.45 +0.5
437,273 - Pf1N1B4_369 0.45 +1.3
437,273 - Pf1N1B4_369 0.45 +0.2
437,273 - Pf1N1B4_369 0.45 -1.6
437,273 - Pf1N1B4_369 0.45 -0.2
437,273 - Pf1N1B4_369 0.45 -1.9
437,273 - Pf1N1B4_369 0.45 +1.0
437,323 + Pf1N1B4_369 0.51 -0.2
437,324 - Pf1N1B4_369 0.51 +0.8
437,324 - Pf1N1B4_369 0.51 -0.9
437,324 - Pf1N1B4_369 0.51 +0.4
437,524 - -0.6
437,524 - Pf1N1B4_369 0.71 +0.6
437,524 - Pf1N1B4_369 0.71 -0.1
437,527 + Pf1N1B4_369 0.72 -1.1
437,528 - Pf1N1B4_369 0.72 +0.2
437,528 - Pf1N1B4_369 0.72 +0.2
437,536 + Pf1N1B4_369 0.73 +0.0
437,536 + Pf1N1B4_369 0.73 -1.6
437,537 - Pf1N1B4_369 0.73 -0.4
437,537 - Pf1N1B4_369 0.73 -0.1
437,537 - Pf1N1B4_369 0.73 +2.8
437,537 - Pf1N1B4_369 0.73 -0.8
437,537 - Pf1N1B4_369 0.73 -1.6
437,537 - Pf1N1B4_369 0.73 +0.0
437,633 - Pf1N1B4_369 0.83 +1.3
437,633 - Pf1N1B4_369 0.83 +0.9

Or see this region's nucleotide sequence