Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2935

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,291,046	+		Pf1N1B4_2934	0.10	+0.7
3,291,046	+		Pf1N1B4_2934	0.10	-0.3
3,291,047	-		Pf1N1B4_2934	0.10	+0.3
3,291,047	-		Pf1N1B4_2934	0.10	-0.1
3,291,047	-				-0.6
3,291,047	-		Pf1N1B4_2934	0.10	-1.6
3,291,047	-		Pf1N1B4_2934	0.10	+1.1
3,291,047	-		Pf1N1B4_2934	0.10	-1.6
3,291,047	-		Pf1N1B4_2934	0.10	+1.3
3,291,085	+		Pf1N1B4_2934	0.16	-1.6
3,291,085	+		Pf1N1B4_2934	0.16	-0.3
3,291,085	+		Pf1N1B4_2934	0.16	+0.0
3,291,085	+		Pf1N1B4_2934	0.16	-0.6
3,291,085	+		Pf1N1B4_2934	0.16	+0.5
3,291,085	+		Pf1N1B4_2934	0.16	+1.4
3,291,085	+		Pf1N1B4_2934	0.16	+0.4
3,291,085	+		Pf1N1B4_2934	0.16	+1.1
3,291,085	+		Pf1N1B4_2934	0.16	-2.2
3,291,085	+		Pf1N1B4_2934	0.16	+0.4
3,291,086	-		Pf1N1B4_2934	0.16	-0.2
3,291,086	-		Pf1N1B4_2934	0.16	+0.5
3,291,086	-		Pf1N1B4_2934	0.16	-2.4
3,291,086	-		Pf1N1B4_2934	0.16	+0.7
3,291,086	-		Pf1N1B4_2934	0.16	-2.1
3,291,086	-		Pf1N1B4_2934	0.16	+0.6
3,291,086	-		Pf1N1B4_2934	0.16	+2.3
3,291,086	-		Pf1N1B4_2934	0.16	-1.1
3,291,283	+		Pf1N1B4_2934	0.47	-0.6
3,291,283	+		Pf1N1B4_2934	0.47	+0.9
3,291,283	+		Pf1N1B4_2934	0.47	+0.9
3,291,283	+		Pf1N1B4_2934	0.47	-0.6
3,291,283	+		Pf1N1B4_2934	0.47	+0.9
3,291,283	+		Pf1N1B4_2934	0.47	+0.5
3,291,283	+		Pf1N1B4_2934	0.47	-0.9
3,291,283	+		Pf1N1B4_2934	0.47	-0.3
3,291,283	+		Pf1N1B4_2934	0.47	-1.0
3,291,284	-		Pf1N1B4_2934	0.47	+0.0
3,291,284	-		Pf1N1B4_2934	0.47	+0.1
3,291,284	-		Pf1N1B4_2934	0.47	+0.5
3,291,284	-		Pf1N1B4_2934	0.47	+0.9
3,291,284	-		Pf1N1B4_2934	0.47	+0.1
3,291,284	-		Pf1N1B4_2934	0.47	-1.6
3,291,284	-		Pf1N1B4_2934	0.47	-0.5
3,291,284	-		Pf1N1B4_2934	0.47	-1.1
3,291,284	-		Pf1N1B4_2934	0.47	-0.4
3,291,284	-		Pf1N1B4_2934	0.47	+2.3
3,291,284	-		Pf1N1B4_2934	0.47	+1.1
3,291,284	-		Pf1N1B4_2934	0.47	-0.2
3,291,284	-		Pf1N1B4_2934	0.47	-0.5
3,291,284	-		Pf1N1B4_2934	0.47	-0.4
3,291,284	-		Pf1N1B4_2934	0.47	+0.8
3,291,284	-		Pf1N1B4_2934	0.47	+1.3
3,291,284	-		Pf1N1B4_2934	0.47	+0.1
3,291,466	+		Pf1N1B4_2934	0.76	+0.0
3,291,466	+		Pf1N1B4_2934	0.76	-1.1
3,291,467	-		Pf1N1B4_2934	0.76	+1.4
3,291,499	+		Pf1N1B4_2934	0.81	-1.1
3,291,499	+		Pf1N1B4_2934	0.81	+1.7
3,291,499	+		Pf1N1B4_2934	0.81	+0.9
3,291,499	+		Pf1N1B4_2934	0.81	-0.1
3,291,499	+		Pf1N1B4_2934	0.81	-1.4
3,291,499	+		Pf1N1B4_2934	0.81	+0.4
3,291,499	+		Pf1N1B4_2934	0.81	-0.6
3,291,500	-		Pf1N1B4_2934	0.81	+0.5
3,291,500	-		Pf1N1B4_2934	0.81	+0.8
3,291,500	-		Pf1N1B4_2934	0.81	-1.4
3,291,500	-		Pf1N1B4_2934	0.81	+0.7
3,291,500	-		Pf1N1B4_2934	0.81	+1.1
3,291,500	-		Pf1N1B4_2934	0.81	-0.3
3,291,500	-		Pf1N1B4_2934	0.81	+1.5
3,291,500	-		Pf1N1B4_2934	0.81	-0.5
3,291,500	-				+2.4
3,291,500	-		Pf1N1B4_2934	0.81	+1.7
3,291,551	+		Pf1N1B4_2934	0.89	-2.6
3,291,551	+		Pf1N1B4_2934	0.89	-2.1
3,291,551	+		Pf1N1B4_2934	0.89	-0.1
3,291,552	-				+0.9
3,291,552	-		Pf1N1B4_2934	0.89	-0.1
3,291,552	-		Pf1N1B4_2934	0.89	+0.3
3,291,552	-		Pf1N1B4_2934	0.89	-0.6
3,291,569	+				+1.3
3,291,569	+				-0.2
3,291,569	+				+0.9
3,291,582	-				+0.7
3,291,582	-				-1.6
3,291,582	-				+0.2
3,291,657	+				-1.6
3,291,658	-				+0.6
3,291,663	-				+2.5
3,291,667	+				-2.2
3,291,667	+				+1.5
3,291,668	-				-0.3
3,291,685	+				+0.1
3,291,686	-				+1.4
3,291,686	-				-0.1
3,291,687	+				+1.5
3,291,687	+				+0.4
3,291,687	+				+0.7
3,291,687	+				+1.5
3,291,687	+				-1.1
3,291,687	+				+0.4
3,291,688	-				+0.9
3,291,688	-				+0.7
3,291,693	+				+1.5
3,291,693	+				+2.5
3,291,693	+				-2.1
3,291,693	+				-0.6
3,291,693	+				-1.4
3,291,693	+				-0.9
3,291,693	+				-1.4
3,291,693	+				+0.8
3,291,693	+				-0.1
3,291,694	-				-0.4
3,291,694	-				-0.1
3,291,694	-				-1.9
3,291,694	-				-0.1
3,291,740	+				-0.1
3,291,741	-				-1.4
3,291,741	-				+0.8
3,291,741	-				+0.7
3,291,851	+				-0.6
3,291,852	-				+1.5
3,291,852	-				-0.1
3,291,852	-				-0.7
3,292,010	+		Pf1N1B4_2935	0.38	-0.4
3,292,011	-		Pf1N1B4_2935	0.38	+1.3
3,292,011	-		Pf1N1B4_2935	0.38	-2.0
3,292,136	-		Pf1N1B4_2935	0.61	-0.9
3,292,277	+		Pf1N1B4_2935	0.86	-2.6
3,292,278	-		Pf1N1B4_2935	0.86	+0.2
3,292,301	+				-1.5
3,292,301	+				-0.1
3,292,302	-				+0.2
3,292,302	-				-0.1
3,292,302	-				+1.3
3,292,352	+				-1.1
3,292,352	+				-0.5
3,292,352	+				-1.5
3,292,352	+				+0.1
3,292,352	+				-0.2
3,292,352	+				-1.7
3,292,353	-				+0.5
3,292,353	-				+0.9
3,292,353	-				-0.2
3,292,353	-				-1.5
3,292,353	-				-0.9
3,292,390	+				+1.8
3,292,390	+				-0.2
3,292,391	-				+1.3
3,292,391	-				+0.4
3,292,508	+				-2.2
3,292,508	+				+1.5
3,292,516	+				-0.4
3,292,516	+				-1.1
3,292,517	-				+0.6
3,292,517	-				-0.4
3,292,569	+				+0.1
3,292,619	-				+0.2
3,292,631	+		Pf1N1B4_2936	0.10	-2.2
3,292,725	+		Pf1N1B4_2936	0.16	-0.4
3,292,726	-		Pf1N1B4_2936	0.16	+1.4
3,292,726	-		Pf1N1B4_2936	0.16	+0.2
3,292,770	+		Pf1N1B4_2936	0.18	+0.5
3,292,777	+		Pf1N1B4_2936	0.19	-2.2
3,292,778	-		Pf1N1B4_2936	0.19	-0.2
3,292,799	+		Pf1N1B4_2936	0.20	+1.9
3,292,799	+		Pf1N1B4_2936	0.20	-0.1
3,292,807	-		Pf1N1B4_2936	0.20	+0.2
3,293,066	-		Pf1N1B4_2936	0.35	+0.2
3,293,066	-		Pf1N1B4_2936	0.35	+0.9
3,293,253	-		Pf1N1B4_2936	0.46	+1.5
3,293,350	-		Pf1N1B4_2936	0.52	-0.8
3,293,350	-		Pf1N1B4_2936	0.52	+1.9