Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2850

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,196,786	+		Pf1N1B4_2849	0.60	+0.7
3,196,786	+		Pf1N1B4_2849	0.60	+0.9
3,196,787	-		Pf1N1B4_2849	0.60	-0.6
3,196,787	-		Pf1N1B4_2849	0.60	-0.6
3,196,788	+				-0.6
3,196,788	+		Pf1N1B4_2849	0.60	+0.7
3,196,788	+		Pf1N1B4_2849	0.60	+1.5
3,196,789	-		Pf1N1B4_2849	0.60	-0.4
3,196,789	-		Pf1N1B4_2849	0.60	-0.4
3,196,789	-		Pf1N1B4_2849	0.60	-0.7
3,196,894	+		Pf1N1B4_2849	0.65	-1.1
3,197,157	+		Pf1N1B4_2849	0.79	+1.7
3,197,157	+		Pf1N1B4_2849	0.79	+0.8
3,197,157	+		Pf1N1B4_2849	0.79	-0.4
3,197,157	+		Pf1N1B4_2849	0.79	+1.2
3,197,157	+		Pf1N1B4_2849	0.79	-0.4
3,197,158	-		Pf1N1B4_2849	0.79	+0.6
3,197,158	-		Pf1N1B4_2849	0.79	+1.4
3,197,158	-		Pf1N1B4_2849	0.79	+0.8
3,197,158	-		Pf1N1B4_2849	0.79	-1.6
3,197,158	-		Pf1N1B4_2849	0.79	+1.2
3,197,158	-		Pf1N1B4_2849	0.79	+0.6
3,197,158	-		Pf1N1B4_2849	0.79	-0.4
3,197,241	+		Pf1N1B4_2849	0.83	-1.9
3,197,241	+		Pf1N1B4_2849	0.83	-1.4
3,197,242	-		Pf1N1B4_2849	0.83	-0.1
3,197,334	+		Pf1N1B4_2849	0.88	-0.5
3,197,334	+		Pf1N1B4_2849	0.88	-1.4
3,197,334	+		Pf1N1B4_2849	0.88	+0.9
3,197,334	+		Pf1N1B4_2849	0.88	+0.2
3,197,334	+		Pf1N1B4_2849	0.88	+0.5
3,197,334	+		Pf1N1B4_2849	0.88	-0.9
3,197,335	-		Pf1N1B4_2849	0.88	-1.4
3,197,345	+		Pf1N1B4_2849	0.89	+0.4
3,197,345	+		Pf1N1B4_2849	0.89	+0.2
3,197,346	-		Pf1N1B4_2849	0.89	-0.1
3,197,346	-		Pf1N1B4_2849	0.89	-0.6
3,197,346	-		Pf1N1B4_2849	0.89	+0.5
3,197,391	+				+0.1
3,197,496	+				+0.7
3,197,496	+				+0.4
3,197,510	+				-1.4
3,197,510	+				+0.5
3,197,510	+				+0.0
3,197,510	+				+0.6
3,197,511	-				+0.5
3,197,511	-				+1.7
3,197,511	-				-0.6
3,197,586	+				-2.1
3,197,587	-				+0.1
3,197,595	+				-0.6
3,197,595	+				+0.6
3,197,595	+				+0.5
3,197,595	+				+1.5
3,197,595	+				+1.2
3,197,595	+				-0.0
3,197,595	+				+0.6
3,197,595	+				+0.5
3,197,595	+				-2.0
3,197,595	+				+1.0
3,197,596	-				-0.3
3,197,596	-				-0.9
3,197,596	-				-1.9
3,197,598	+				-0.4
3,197,651	+				+1.6
3,197,696	+				+1.3
3,197,696	+				+0.3
3,197,696	+				-1.0
3,197,697	-				+1.0
3,197,735	+				+0.5
3,197,778	+				-1.4
3,197,779	-				-1.5
3,197,779	-				-2.2
3,197,779	-				-0.2
3,197,779	-				-1.0
3,197,844	+				-1.4
3,197,844	+				-0.6
3,197,844	+				-0.6
3,197,845	-				-1.7
3,197,845	-				-2.0
3,197,845	-				-2.5
3,197,845	-				-0.0
3,197,940	+		Pf1N1B4_2850	0.11	-1.0
3,197,940	+				-1.4
3,197,940	+		Pf1N1B4_2850	0.11	-0.3
3,197,940	+		Pf1N1B4_2850	0.11	-2.6
3,197,940	+		Pf1N1B4_2850	0.11	-0.6
3,197,940	+		Pf1N1B4_2850	0.11	-0.6
3,197,940	+		Pf1N1B4_2850	0.11	-1.6
3,197,940	+		Pf1N1B4_2850	0.11	-1.2
3,197,941	-		Pf1N1B4_2850	0.11	+1.0
3,197,941	-		Pf1N1B4_2850	0.11	-0.6
3,197,941	-		Pf1N1B4_2850	0.11	+1.0
3,197,941	-		Pf1N1B4_2850	0.11	-1.6
3,197,941	-		Pf1N1B4_2850	0.11	-1.0
3,197,941	-		Pf1N1B4_2850	0.11	-1.4
3,197,941	-		Pf1N1B4_2850	0.11	-0.3
3,197,941	-		Pf1N1B4_2850	0.11	-1.0
3,197,941	-		Pf1N1B4_2850	0.11	-1.0
3,197,941	-		Pf1N1B4_2850	0.11	+0.4
3,197,978	-		Pf1N1B4_2850	0.14	-2.7
3,198,044	+		Pf1N1B4_2850	0.17	-0.6
3,198,045	-		Pf1N1B4_2850	0.18	+2.5
3,198,144	+				+1.0
3,198,144	+				-0.6
3,198,144	+		Pf1N1B4_2850	0.23	-0.8
3,198,144	+		Pf1N1B4_2850	0.23	-0.4
3,198,221	-		Pf1N1B4_2850	0.28	-0.6
3,198,221	-		Pf1N1B4_2850	0.28	-0.0
3,198,243	+		Pf1N1B4_2850	0.29	+1.3
3,198,243	+		Pf1N1B4_2850	0.29	-0.6
3,198,243	+		Pf1N1B4_2850	0.29	+0.5
3,198,244	-		Pf1N1B4_2850	0.29	-1.6
3,198,244	-		Pf1N1B4_2850	0.29	-0.0
3,198,244	-		Pf1N1B4_2850	0.29	-1.0
3,198,324	-		Pf1N1B4_2850	0.34	-0.0
3,198,384	+		Pf1N1B4_2850	0.38	-0.6
3,198,384	+		Pf1N1B4_2850	0.38	-2.0
3,198,384	+		Pf1N1B4_2850	0.38	+0.1
3,198,384	+		Pf1N1B4_2850	0.38	-0.0
3,198,384	+		Pf1N1B4_2850	0.38	-1.5
3,198,385	-		Pf1N1B4_2850	0.38	+0.3
3,198,385	-		Pf1N1B4_2850	0.38	-0.9
3,198,393	+		Pf1N1B4_2850	0.38	-0.0
3,198,436	-		Pf1N1B4_2850	0.41	-0.0
3,198,513	+		Pf1N1B4_2850	0.46	-0.6
3,198,513	+		Pf1N1B4_2850	0.46	+0.2
3,198,513	+		Pf1N1B4_2850	0.46	-0.6
3,198,513	+		Pf1N1B4_2850	0.46	-0.6
3,198,513	+		Pf1N1B4_2850	0.46	-1.6
3,198,513	+		Pf1N1B4_2850	0.46	+0.5
3,198,514	-		Pf1N1B4_2850	0.46	-0.6
3,198,595	-		Pf1N1B4_2850	0.51	-1.6
3,198,696	+		Pf1N1B4_2850	0.57	-1.4
3,198,867	+				-1.9
3,198,868	-		Pf1N1B4_2850	0.67	+1.0
3,199,049	+		Pf1N1B4_2850	0.78	+0.4
3,199,049	+		Pf1N1B4_2850	0.78	-1.9
3,199,049	+		Pf1N1B4_2850	0.78	-0.0
3,199,049	+		Pf1N1B4_2850	0.78	-2.6
3,199,049	+		Pf1N1B4_2850	0.78	-1.0
3,199,049	+		Pf1N1B4_2850	0.78	-1.4
3,199,049	+		Pf1N1B4_2850	0.78	-1.6
3,199,049	+		Pf1N1B4_2850	0.78	-2.5
3,199,049	+		Pf1N1B4_2850	0.78	-1.2
3,199,050	-		Pf1N1B4_2850	0.78	-1.4
3,199,050	-		Pf1N1B4_2850	0.78	-0.0
3,199,050	-		Pf1N1B4_2850	0.78	-1.0
3,199,050	-		Pf1N1B4_2850	0.78	-1.9
3,199,050	-		Pf1N1B4_2850	0.78	-0.6
3,199,050	-		Pf1N1B4_2850	0.78	-0.6
3,199,252	-				-0.0
3,199,291	+				-1.4
3,199,291	+				-1.0
3,199,410	+				-1.0
3,199,410	+				+0.1
3,199,410	+				-0.0
3,199,411	-				-0.6
3,199,411	-				-0.2
3,199,436	+		Pf1N1B4_2851	0.29	+0.6
3,199,437	-		Pf1N1B4_2851	0.30	+0.6
3,199,437	-		Pf1N1B4_2851	0.30	-0.8
3,199,461	+		Pf1N1B4_2851	0.47	-1.0
3,199,530	+				-0.6
3,199,531	-				+0.4
3,199,531	-				-0.9
3,199,531	-				-0.4
3,199,531	-				+0.6
3,199,535	+				+0.8
3,199,535	+				-0.0
3,199,535	+				-0.3
3,199,591	+				-1.4
3,199,592	-				-1.1
3,199,598	+				-1.2
3,199,598	+				+2.4
3,199,598	+				-0.0
3,199,598	+				+0.3
3,199,599	-				+1.5
3,199,599	-				-0.5
3,199,599	-				-0.6
3,199,710	+		Pf1N1B4_2852	0.16	-0.1
3,199,710	+		Pf1N1B4_2852	0.16	+0.6
3,199,710	+		Pf1N1B4_2852	0.16	-0.6
3,199,710	+		Pf1N1B4_2852	0.16	-0.3
3,199,710	+		Pf1N1B4_2852	0.16	-1.6
3,199,710	+				+0.9
3,199,710	+		Pf1N1B4_2852	0.16	-0.4
3,199,710	+		Pf1N1B4_2852	0.16	+0.9
3,199,710	+		Pf1N1B4_2852	0.16	-0.4
3,199,710	+		Pf1N1B4_2852	0.16	-1.6
3,199,711	-		Pf1N1B4_2852	0.16	+0.2
3,199,711	-		Pf1N1B4_2852	0.16	+0.2
3,199,711	-		Pf1N1B4_2852	0.16	+0.0
3,199,711	-		Pf1N1B4_2852	0.16	+0.4
3,199,711	-		Pf1N1B4_2852	0.16	+0.9
3,199,711	-		Pf1N1B4_2852	0.16	-1.9
3,199,711	-		Pf1N1B4_2852	0.16	-0.6
3,199,711	-		Pf1N1B4_2852	0.16	+0.2
3,199,711	-		Pf1N1B4_2852	0.16	+1.9
3,199,711	-		Pf1N1B4_2852	0.16	-0.6
3,199,752	+		Pf1N1B4_2852	0.27	+0.1
3,199,857	+		Pf1N1B4_2852	0.55	+0.6
3,199,857	+		Pf1N1B4_2852	0.55	-1.1
3,199,890	+		Pf1N1B4_2852	0.63	+0.8
3,199,890	+		Pf1N1B4_2852	0.63	-1.1
3,199,890	+		Pf1N1B4_2852	0.63	-0.1
3,199,890	+		Pf1N1B4_2852	0.63	-0.9
3,199,890	+		Pf1N1B4_2852	0.63	+0.1
3,199,890	+		Pf1N1B4_2852	0.63	-0.8
3,199,890	+		Pf1N1B4_2852	0.63	+1.1
3,199,891	-		Pf1N1B4_2852	0.64	-0.6
3,199,891	-		Pf1N1B4_2852	0.64	+0.2
3,199,891	-		Pf1N1B4_2852	0.64	-0.6
3,199,908	+		Pf1N1B4_2852	0.68	+1.4
3,199,908	+		Pf1N1B4_2852	0.68	+0.9
3,199,909	-		Pf1N1B4_2852	0.68	+0.6
3,199,909	-		Pf1N1B4_2852	0.68	+1.5
3,199,965	+		Pf1N1B4_2852	0.83	+0.6
3,199,965	+		Pf1N1B4_2852	0.83	-0.3
3,200,093	+				+0.1
3,200,093	+				+0.2
3,200,093	+				+0.1
3,200,093	+				+0.9
3,200,093	+				+0.3
3,200,093	+				+0.9
3,200,093	+				-0.3
3,200,094	-				+0.6
3,200,094	-				-1.0
3,200,149	+				-0.4
3,200,149	+				-1.4
3,200,152	+				-0.4
3,200,152	+				-0.1
3,200,153	-				+0.9
3,200,219	+				+0.4
3,200,226	+				+0.4
3,200,226	+				-0.1
3,200,362	-		Pf1N1B4_2853	0.16	+0.9