Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2813

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,154,513	-		Pf1N1B4_2811	0.42	+0.2
3,154,642	+		Pf1N1B4_2811	0.73	+0.3
3,154,644	+		Pf1N1B4_2811	0.73	-1.3
3,154,644	+				-1.0
3,154,644	+		Pf1N1B4_2811	0.73	-0.6
3,154,644	+		Pf1N1B4_2811	0.73	+1.0
3,154,644	+		Pf1N1B4_2811	0.73	+0.2
3,154,644	+		Pf1N1B4_2811	0.73	+1.8
3,154,644	+		Pf1N1B4_2811	0.73	-0.4
3,154,644	+		Pf1N1B4_2811	0.73	+0.5
3,154,645	-		Pf1N1B4_2811	0.74	+0.4
3,154,645	-		Pf1N1B4_2811	0.74	-0.5
3,154,645	-		Pf1N1B4_2811	0.74	+0.2
3,154,645	-		Pf1N1B4_2811	0.74	-2.6
3,154,645	-				-1.4
3,154,646	-		Pf1N1B4_2811	0.74	-0.5
3,154,788	+				-0.6
3,154,788	+				-1.6
3,154,862	+		Pf1N1B4_2812	0.16	-0.4
3,154,862	+		Pf1N1B4_2812	0.16	+0.1
3,154,862	+		Pf1N1B4_2812	0.16	+0.8
3,154,862	+		Pf1N1B4_2812	0.16	+0.2
3,154,863	-		Pf1N1B4_2812	0.16	-1.4
3,154,863	-		Pf1N1B4_2812	0.16	+0.7
3,154,863	-		Pf1N1B4_2812	0.16	-0.0
3,154,863	-		Pf1N1B4_2812	0.16	+1.3
3,154,863	-		Pf1N1B4_2812	0.16	+1.0
3,154,863	-		Pf1N1B4_2812	0.16	+0.5
3,154,863	-		Pf1N1B4_2812	0.16	+1.5
3,154,863	-		Pf1N1B4_2812	0.16	+0.5
3,154,863	-		Pf1N1B4_2812	0.16	-1.0
3,154,863	-		Pf1N1B4_2812	0.16	+0.4
3,155,049	+		Pf1N1B4_2812	0.42	+0.7
3,155,049	+		Pf1N1B4_2812	0.42	-0.7
3,155,050	-		Pf1N1B4_2812	0.42	-0.3
3,155,050	-		Pf1N1B4_2812	0.42	-1.0
3,155,050	-		Pf1N1B4_2812	0.42	+0.3
3,155,135	+		Pf1N1B4_2812	0.54	+0.8
3,155,136	-		Pf1N1B4_2812	0.54	+0.9
3,155,145	+		Pf1N1B4_2812	0.55	+0.7
3,155,145	+		Pf1N1B4_2812	0.55	+0.3
3,155,195	+		Pf1N1B4_2812	0.62	-1.4
3,155,196	-		Pf1N1B4_2812	0.62	-0.3
3,155,196	-		Pf1N1B4_2812	0.62	+0.6
3,155,196	-		Pf1N1B4_2812	0.62	+0.2
3,155,196	-		Pf1N1B4_2812	0.62	-0.4
3,155,333	+		Pf1N1B4_2812	0.82	-0.6
3,155,333	+		Pf1N1B4_2812	0.82	+1.4
3,155,482	-				+0.2
3,155,482	-				+1.0
3,155,586	+		Pf1N1B4_2813	0.35	+1.7
3,155,587	-		Pf1N1B4_2813	0.36	-1.6
3,155,587	-		Pf1N1B4_2813	0.36	+0.2
3,155,587	-		Pf1N1B4_2813	0.36	-0.5
3,155,688	+		Pf1N1B4_2813	0.68	-0.8
3,155,688	+		Pf1N1B4_2813	0.68	-1.0
3,155,688	+		Pf1N1B4_2813	0.68	+1.0
3,155,688	+		Pf1N1B4_2813	0.68	+1.4
3,155,689	-		Pf1N1B4_2813	0.68	+0.5
3,155,689	-		Pf1N1B4_2813	0.68	+0.4
3,155,689	-		Pf1N1B4_2813	0.68	-0.3
3,155,689	-		Pf1N1B4_2813	0.68	+0.3
3,155,692	+		Pf1N1B4_2813	0.69	-0.7
3,155,692	+		Pf1N1B4_2813	0.69	+0.4
3,155,692	+		Pf1N1B4_2813	0.69	-0.6
3,155,692	+		Pf1N1B4_2813	0.69	+0.5
3,155,692	+		Pf1N1B4_2813	0.69	+0.4
3,155,692	+		Pf1N1B4_2813	0.69	-1.6
3,155,692	+		Pf1N1B4_2813	0.69	-0.3
3,155,692	+		Pf1N1B4_2813	0.69	-0.8
3,155,692	+		Pf1N1B4_2813	0.69	-1.4
3,155,692	+		Pf1N1B4_2813	0.69	-2.0
3,155,693	-		Pf1N1B4_2813	0.70	-0.6
3,155,693	-		Pf1N1B4_2813	0.70	-0.6
3,155,693	-		Pf1N1B4_2813	0.70	+2.2
3,155,693	-		Pf1N1B4_2813	0.70	-0.2
3,155,693	-		Pf1N1B4_2813	0.70	-1.8
3,155,693	-		Pf1N1B4_2813	0.70	-0.1
3,155,693	-		Pf1N1B4_2813	0.70	-0.4
3,155,693	-		Pf1N1B4_2813	0.70	+1.0
3,155,693	-		Pf1N1B4_2813	0.70	-1.6
3,155,857	+		Pf1N1B4_2814	0.43	-0.2
3,155,858	-		Pf1N1B4_2814	0.43	-0.8
3,155,936	+		Pf1N1B4_2814	0.89	+0.7
3,155,936	+		Pf1N1B4_2814	0.89	+0.6
3,155,936	+		Pf1N1B4_2814	0.89	-0.4
3,155,936	+		Pf1N1B4_2814	0.89	+0.2
3,155,937	-		Pf1N1B4_2814	0.89	-0.2
3,155,937	-		Pf1N1B4_2814	0.89	+1.3
3,155,937	-		Pf1N1B4_2814	0.89	-0.6
3,155,937	-		Pf1N1B4_2814	0.89	-0.6
3,155,937	-		Pf1N1B4_2814	0.89	-2.6
3,155,937	-		Pf1N1B4_2814	0.89	-0.8
3,155,937	-		Pf1N1B4_2814	0.89	+0.5
3,155,937	-		Pf1N1B4_2814	0.89	+1.0
3,155,937	-		Pf1N1B4_2814	0.89	+0.8
3,155,937	-		Pf1N1B4_2814	0.89	-0.4
3,155,940	+				+0.5
3,155,940	+				-0.2
3,155,940	+				-1.5
3,155,940	+				+0.5
3,155,940	+				-0.3
3,155,940	+				+0.3
3,155,941	-				+0.5
3,155,941	-				-0.6
3,155,941	-				-0.8
3,155,941	-				-0.4
3,155,941	-				+0.5
3,155,941	-				-1.0
3,155,941	-				+0.6
3,155,941	-				+1.5
3,155,941	-				-0.0
3,155,941	-				-1.2
3,155,949	+				+0.5
3,155,950	-				+0.1
3,155,950	-				+1.0
3,155,950	-				-0.8
3,156,016	+				+1.5
3,156,017	-				-0.6
3,156,034	+				+0.8
3,156,035	-				-0.5
3,156,098	+				+2.9
3,156,098	+				-0.3
3,156,120	+				+2.4
3,156,120	+				+0.6
3,156,120	+				+0.4
3,156,120	+				-2.2
3,156,120	+				-0.8
3,156,121	-				+0.4
3,156,121	-				+0.2
3,156,121	-				-0.6
3,156,121	-				+1.4
3,156,132	+				+0.4
3,156,132	+				-1.0
3,156,133	-				-1.7
3,156,133	-				+1.0
3,156,169	-				+1.4
3,156,181	-				-2.9
3,156,367	-		Pf1N1B4_2815	0.14	-0.4
3,156,367	-		Pf1N1B4_2815	0.14	+1.0
3,156,367	-		Pf1N1B4_2815	0.14	-1.8
3,156,367	-		Pf1N1B4_2815	0.14	+0.7
3,156,367	-		Pf1N1B4_2815	0.14	-0.5
3,156,367	-		Pf1N1B4_2815	0.14	+1.0
3,156,373	+		Pf1N1B4_2815	0.14	+1.0
3,156,374	-		Pf1N1B4_2815	0.14	-1.6
3,156,385	+		Pf1N1B4_2815	0.14	-0.6
3,156,385	+		Pf1N1B4_2815	0.14	-1.6
3,156,385	+		Pf1N1B4_2815	0.14	-0.0
3,156,385	+				+0.2
3,156,385	+		Pf1N1B4_2815	0.14	-1.0
3,156,386	-		Pf1N1B4_2815	0.14	+0.6
3,156,386	-		Pf1N1B4_2815	0.14	-0.3
3,156,386	-		Pf1N1B4_2815	0.14	-0.2
3,156,386	-		Pf1N1B4_2815	0.14	+1.0
3,156,394	+		Pf1N1B4_2815	0.15	-0.4
3,156,394	+		Pf1N1B4_2815	0.15	-1.0
3,156,394	+		Pf1N1B4_2815	0.15	-0.1
3,156,394	+		Pf1N1B4_2815	0.15	-1.4
3,156,559	-		Pf1N1B4_2815	0.20	-1.2
3,156,574	+		Pf1N1B4_2815	0.20	-0.0
3,156,574	+		Pf1N1B4_2815	0.20	-0.6
3,156,575	-		Pf1N1B4_2815	0.20	-0.6
3,156,576	+		Pf1N1B4_2815	0.20	+0.2
3,156,576	+		Pf1N1B4_2815	0.20	+0.3
3,156,576	+		Pf1N1B4_2815	0.20	-1.9
3,156,577	-		Pf1N1B4_2815	0.20	+1.2
3,156,577	-		Pf1N1B4_2815	0.20	+2.0
3,156,577	-		Pf1N1B4_2815	0.20	+0.4
3,156,646	+		Pf1N1B4_2815	0.23	-0.6
3,156,646	+				-1.0
3,156,647	-		Pf1N1B4_2815	0.23	+2.0
3,156,647	-		Pf1N1B4_2815	0.23	+0.6
3,156,712	+		Pf1N1B4_2815	0.25	-1.1
3,156,712	+		Pf1N1B4_2815	0.25	-1.6
3,156,713	-		Pf1N1B4_2815	0.25	+1.0
3,156,713	-		Pf1N1B4_2815	0.25	-0.3
3,156,715	+		Pf1N1B4_2815	0.25	-1.4
3,156,716	-		Pf1N1B4_2815	0.25	-1.4
3,156,752	-		Pf1N1B4_2815	0.26	-0.1
3,156,775	+				-1.6
3,156,775	+		Pf1N1B4_2815	0.27	+1.4
3,156,775	+		Pf1N1B4_2815	0.27	+0.7
3,156,775	+		Pf1N1B4_2815	0.27	-0.6
3,156,775	+				-0.4
3,156,775	+				-0.0
3,156,775	+		Pf1N1B4_2815	0.27	-0.6
3,156,775	+				-0.0
3,156,775	+		Pf1N1B4_2815	0.27	+0.7
3,156,775	+		Pf1N1B4_2815	0.27	+0.1
3,156,776	-		Pf1N1B4_2815	0.27	-1.0
3,156,776	-		Pf1N1B4_2815	0.27	+0.7
3,156,776	-		Pf1N1B4_2815	0.27	-0.0
3,156,776	-		Pf1N1B4_2815	0.27	-1.4
3,156,776	-		Pf1N1B4_2815	0.27	+1.0
3,156,776	-		Pf1N1B4_2815	0.27	-1.6
3,156,776	-		Pf1N1B4_2815	0.27	+1.0
3,156,776	-		Pf1N1B4_2815	0.27	+1.2
3,156,776	-		Pf1N1B4_2815	0.27	+0.6
3,156,776	-		Pf1N1B4_2815	0.27	-0.3
3,156,776	-		Pf1N1B4_2815	0.27	-0.8
3,156,776	-		Pf1N1B4_2815	0.27	+0.3
3,156,776	-		Pf1N1B4_2815	0.27	-1.0
3,156,778	-				-0.6