Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2681

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,018,410	+		Pf1N1B4_2680	0.49	+0.2
3,018,410	+		Pf1N1B4_2680	0.49	+0.4
3,018,411	-		Pf1N1B4_2680	0.49	-0.5
3,018,411	-		Pf1N1B4_2680	0.49	-1.0
3,018,458	+		Pf1N1B4_2680	0.52	-0.6
3,018,458	+		Pf1N1B4_2680	0.52	-1.4
3,018,458	+		Pf1N1B4_2680	0.52	+0.6
3,018,458	+		Pf1N1B4_2680	0.52	+1.1
3,018,458	+		Pf1N1B4_2680	0.52	+0.4
3,018,459	-		Pf1N1B4_2680	0.52	-0.2
3,018,459	-		Pf1N1B4_2680	0.52	+1.0
3,018,459	-		Pf1N1B4_2680	0.52	-0.7
3,018,459	-		Pf1N1B4_2680	0.52	+0.1
3,018,472	+		Pf1N1B4_2680	0.53	+0.7
3,018,472	+		Pf1N1B4_2680	0.53	-0.6
3,018,473	-		Pf1N1B4_2680	0.53	+1.4
3,018,473	-		Pf1N1B4_2680	0.53	+0.2
3,018,473	-		Pf1N1B4_2680	0.53	-0.3
3,018,473	-		Pf1N1B4_2680	0.53	+0.2
3,018,473	-		Pf1N1B4_2680	0.53	+1.0
3,018,473	-		Pf1N1B4_2680	0.53	-1.7
3,018,473	-		Pf1N1B4_2680	0.53	+0.6
3,018,473	-		Pf1N1B4_2680	0.53	-0.0
3,018,499	+		Pf1N1B4_2680	0.54	-0.6
3,018,499	+		Pf1N1B4_2680	0.54	+0.7
3,018,500	-		Pf1N1B4_2680	0.54	-1.3
3,018,500	-		Pf1N1B4_2680	0.54	-1.3
3,018,568	+		Pf1N1B4_2680	0.58	+0.8
3,018,568	+		Pf1N1B4_2680	0.58	+1.0
3,018,568	+		Pf1N1B4_2680	0.58	-0.0
3,018,568	+		Pf1N1B4_2680	0.58	+1.0
3,018,568	+		Pf1N1B4_2680	0.58	-1.1
3,018,569	-		Pf1N1B4_2680	0.58	-1.0
3,018,569	-		Pf1N1B4_2680	0.58	-0.6
3,018,569	-		Pf1N1B4_2680	0.58	+0.7
3,018,569	-		Pf1N1B4_2680	0.58	+0.8
3,018,569	-		Pf1N1B4_2680	0.58	+1.6
3,018,569	-		Pf1N1B4_2680	0.58	-1.3
3,018,706	+		Pf1N1B4_2680	0.66	+0.8
3,018,706	+		Pf1N1B4_2680	0.66	+0.7
3,018,706	+		Pf1N1B4_2680	0.66	+0.8
3,018,706	+		Pf1N1B4_2680	0.66	+0.2
3,018,706	+		Pf1N1B4_2680	0.66	+0.2
3,018,706	+		Pf1N1B4_2680	0.66	-0.5
3,018,706	+		Pf1N1B4_2680	0.66	+0.3
3,018,706	+		Pf1N1B4_2680	0.66	-1.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.6
3,018,706	+		Pf1N1B4_2680	0.66	-0.7
3,018,706	+		Pf1N1B4_2680	0.66	+0.7
3,018,706	+		Pf1N1B4_2680	0.66	+1.0
3,018,706	+		Pf1N1B4_2680	0.66	-1.3
3,018,706	+		Pf1N1B4_2680	0.66	-2.8
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-1.2
3,018,706	+		Pf1N1B4_2680	0.66	+1.6
3,018,706	+		Pf1N1B4_2680	0.66	+1.6
3,018,706	+		Pf1N1B4_2680	0.66	+1.0
3,018,706	+		Pf1N1B4_2680	0.66	+0.5
3,018,707	-		Pf1N1B4_2680	0.66	-0.8
3,018,707	-		Pf1N1B4_2680	0.66	+0.8
3,018,707	-		Pf1N1B4_2680	0.66	-0.7
3,018,707	-		Pf1N1B4_2680	0.66	-0.6
3,018,707	-		Pf1N1B4_2680	0.66	-1.0
3,018,707	-		Pf1N1B4_2680	0.66	+0.4
3,018,707	-		Pf1N1B4_2680	0.66	-1.0
3,018,711	-		Pf1N1B4_2680	0.66	+0.6
3,018,887	-		Pf1N1B4_2680	0.77	-0.3
3,018,887	-		Pf1N1B4_2680	0.77	-0.2
3,018,979	+		Pf1N1B4_2680	0.82	+0.3
3,019,254	+				-1.0
3,019,254	+				-0.7
3,019,286	+				+0.2
3,019,304	+				-1.3
3,019,304	+				-1.0
3,019,305	-				+2.0
3,019,305	-				+1.0
3,019,317	-				+0.7
3,019,327	+				-1.7
3,019,327	+				-1.6
3,019,327	+				+2.2
3,019,327	+				-0.7
3,019,327	+				-0.3
3,019,327	+				-0.6
3,019,327	+				-0.4
3,019,327	+				-0.6
3,019,327	+				+0.6
3,019,327	+				-0.3
3,019,327	+				-0.7
3,019,328	-				+0.5
3,019,328	-				-0.6
3,019,328	-				-0.4
3,019,328	-				+0.5
3,019,328	-				-1.0
3,019,328	-				+0.1
3,019,340	+				-0.0
3,019,341	-				-0.0
3,019,341	-				+0.1
3,019,341	-				+0.1
3,019,403	-				-2.2
3,019,403	-				-0.0
3,019,433	+				+0.3
3,019,433	+				-1.3
3,019,433	+				-1.6
3,019,434	-				-0.6
3,019,434	-				-1.5
3,019,435	+				-0.9
3,019,435	+				-0.6
3,019,435	+				+1.3
3,019,435	+				+0.7
3,019,435	+				-0.2
3,019,435	+				-1.5
3,019,435	+				+0.4
3,019,435	+				+2.0
3,019,435	+				-1.3
3,019,435	+				-1.1
3,019,435	+				+0.2
3,019,435	+				-1.6
3,019,435	+				-0.6
3,019,436	-				-1.0
3,019,436	-				+1.0
3,019,436	-				-0.5
3,019,436	-				+1.6
3,019,436	-				-1.6
3,019,436	-				-0.6
3,019,436	-				-0.6
3,019,436	-				+1.4
3,019,436	-				+1.6
3,019,591	+		Pf1N1B4_2681	0.42	-1.0
3,019,591	+		Pf1N1B4_2681	0.42	-0.8
3,019,591	+		Pf1N1B4_2681	0.42	-1.0
3,019,591	+		Pf1N1B4_2681	0.42	-0.3
3,019,591	+		Pf1N1B4_2681	0.42	-2.3
3,019,591	+		Pf1N1B4_2681	0.42	-1.3
3,019,591	+				+1.0
3,019,591	+		Pf1N1B4_2681	0.42	-0.8
3,019,592	-		Pf1N1B4_2681	0.42	+0.6
3,019,592	-		Pf1N1B4_2681	0.42	-0.4
3,019,592	-		Pf1N1B4_2681	0.42	-1.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	+0.6
3,019,592	-		Pf1N1B4_2681	0.42	-0.5
3,019,592	-		Pf1N1B4_2681	0.42	+0.7
3,019,592	-		Pf1N1B4_2681	0.42	+0.4
3,019,592	-		Pf1N1B4_2681	0.42	-0.8
3,019,599	+		Pf1N1B4_2681	0.43	-1.3
3,019,600	-		Pf1N1B4_2681	0.44	+1.0
3,019,739	-		Pf1N1B4_2681	0.74	+0.9
3,019,822	+				-0.6
3,019,849	+				-0.7
3,019,849	+				-0.9
3,019,850	-				+0.1
3,019,850	-				+0.3
3,019,850	-				-0.6
3,019,883	+				+0.4
3,019,884	-				-1.0
3,019,885	+				-1.3
3,019,886	-				+1.0
3,019,886	-				+0.6
3,019,886	-				+2.0
3,019,928	-				-0.5
3,019,958	+				-0.0
3,019,958	+				-0.6
3,019,958	+				-2.2
3,019,959	-				+0.4
3,019,959	-				+0.3
3,019,959	-				+1.0
3,019,959	-				+0.7
3,019,988	-				-0.0
3,020,002	+				-2.3
3,020,002	+				-2.0
3,020,002	+				-0.6
3,020,002	+				-0.0
3,020,002	+				-1.6
3,020,002	+				-1.3
3,020,002	+				-1.6
3,020,002	+				-0.8
3,020,003	-				+0.8
3,020,003	-				+0.4
3,020,003	-				-0.4
3,020,003	-				-0.8
3,020,003	-				+1.0
3,020,003	-				-0.4
3,020,004	+				-1.6
3,020,004	+				-1.0
3,020,005	-				+1.6
3,020,005	-				+1.4
3,020,005	-				+1.3
3,020,005	-				+2.0
3,020,005	-				-0.4
3,020,005	-				+1.0
3,020,058	+				-0.6
3,020,058	+				-0.6
3,020,058	+				+0.6
3,020,058	+				-1.0
3,020,059	-				-0.3
3,020,059	-				+2.2
3,020,276	+		Pf1N1B4_2682	0.62	-1.3
3,020,276	+		Pf1N1B4_2682	0.62	-1.7
3,020,277	-		Pf1N1B4_2682	0.63	+0.7
3,020,277	-		Pf1N1B4_2682	0.63	-1.6
3,020,475	+				+0.6
3,020,475	+				+0.2
3,020,475	+				+0.6
3,020,475	+				-0.6
3,020,476	-				+1.4
3,020,476	-				+0.4
3,020,476	-				-0.6
3,020,488	+		Pf1N1B4_2683	0.11	+0.7
3,020,488	+		Pf1N1B4_2683	0.11	-0.6
3,020,509	+		Pf1N1B4_2683	0.14	-0.0
3,020,510	-		Pf1N1B4_2683	0.14	+0.3
3,020,631	+		Pf1N1B4_2683	0.31	-0.6
3,020,631	+		Pf1N1B4_2683	0.31	-0.2
3,020,631	+		Pf1N1B4_2683	0.31	+1.7
3,020,632	-		Pf1N1B4_2683	0.31	+0.2
3,020,632	-		Pf1N1B4_2683	0.31	+0.2
3,020,674	+		Pf1N1B4_2683	0.37	-1.6
3,020,674	+		Pf1N1B4_2683	0.37	-0.2
3,020,675	-		Pf1N1B4_2683	0.37	+0.4
3,020,718	+		Pf1N1B4_2683	0.43	+0.4
3,020,718	+		Pf1N1B4_2683	0.43	+0.6
3,020,718	+		Pf1N1B4_2683	0.43	+1.0
3,020,719	-		Pf1N1B4_2683	0.43	+0.4
3,020,721	+		Pf1N1B4_2683	0.43	+0.7
3,020,722	-		Pf1N1B4_2683	0.44	-1.0
3,020,722	-		Pf1N1B4_2683	0.44	+1.6
3,020,732	+		Pf1N1B4_2683	0.45	+1.6