Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2228

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
2,538,487	-				+2.1
2,538,524	+				-0.5
2,538,524	+				+0.6
2,538,524	+				+0.3
2,538,525	-				+0.1
2,538,525	-				+1.1
2,538,545	+				-0.5
2,538,545	+				-1.2
2,538,545	+				+0.3
2,538,545	+				-0.1
2,538,545	+				-0.7
2,538,545	+				+0.4
2,538,546	-				+0.8
2,538,546	-				-0.0
2,538,575	+				+0.4
2,538,576	-				+1.5
2,538,613	+				+0.8
2,538,613	+				-0.3
2,538,614	-				+0.3
2,538,614	-				-0.1
2,538,635	-				-1.1
2,538,733	+				-0.7
2,538,733	+				+0.1
2,538,733	+				-0.5
2,538,734	-				+0.1
2,538,734	-				+0.6
2,538,734	-				-0.2
2,538,734	-				-0.9
2,538,734	-				-0.5
2,538,734	-				-2.2
2,538,734	-				+0.3
2,538,735	+				+1.4
2,538,735	+				-3.1
2,538,736	-				-0.3
2,539,188	-		Pf1N1B4_2227	0.56	-0.5
2,539,188	-				+1.7
2,539,191	-		Pf1N1B4_2227	0.58	+0.1
2,539,191	-		Pf1N1B4_2227	0.58	+2.7
2,539,191	-		Pf1N1B4_2227	0.58	+1.9
2,539,191	-		Pf1N1B4_2227	0.58	-0.7
2,539,212	-		Pf1N1B4_2227	0.68	+1.3
2,539,212	-		Pf1N1B4_2227	0.68	+1.3
2,539,310	-				-0.1
2,539,310	-				+0.6
2,539,310	-				+2.1
2,539,310	-				+1.1
2,539,310	-				+0.2
2,539,310	-				+0.3
2,539,310	-				-1.1
2,539,328	-				-0.2
2,539,328	-				-1.5
2,539,328	-				+2.1
2,539,328	-				+1.8
2,539,331	-				+0.5
2,539,331	-				-0.7
2,539,331	-				+1.7
2,539,331	-				-0.2
2,539,331	-				-0.5
2,539,331	-				-1.2
2,539,353	+				-2.1
2,539,354	-				-0.2
2,539,354	-				-0.5
2,539,354	-				-2.1
2,539,354	-				-1.7
2,539,354	-				-1.9
2,539,354	-				-0.5
2,539,354	-				+0.1
2,539,359	-				+1.1
2,539,359	-				-0.5
2,539,359	-				-2.9
2,539,359	-				-0.4
2,539,359	-				+0.3
2,539,359	-				-1.5
2,539,359	-				+0.8
2,539,359	-				-1.2
2,539,359	-				-1.5
2,539,359	-				-1.2
2,539,375	-				+1.1
2,539,375	-				-1.3
2,539,375	-				-1.9
2,539,375	-				-0.9
2,539,375	-				-1.5
2,539,381	-				-1.2
2,539,381	-				-1.7
2,539,381	-				-2.5
2,539,398	-				-1.7
2,539,398	-				+0.3
2,539,636	+		Pf1N1B4_2228	0.41	-0.7
2,539,637	-		Pf1N1B4_2228	0.42	-0.5
2,539,637	-		Pf1N1B4_2228	0.42	-0.1
2,539,763	+		Pf1N1B4_2228	0.64	+0.2
2,539,784	-		Pf1N1B4_2228	0.68	-0.9
2,539,862	+				+0.1
2,539,863	-		Pf1N1B4_2228	0.82	-1.6
2,539,863	-		Pf1N1B4_2228	0.82	-1.1
2,539,863	-		Pf1N1B4_2228	0.82	-0.3
2,539,880	+		Pf1N1B4_2228	0.85	+0.7
2,539,880	+		Pf1N1B4_2228	0.85	-0.5
2,539,881	-		Pf1N1B4_2228	0.86	-2.1
2,539,881	-		Pf1N1B4_2228	0.86	-0.5
2,539,881	-		Pf1N1B4_2228	0.86	-0.1
2,539,881	-		Pf1N1B4_2228	0.86	-1.7
2,539,958	+				+0.3
2,539,996	+				-0.6
2,540,012	+				-1.9
2,540,012	+				-0.2
2,540,141	+		Pf1N1B4_2229	0.11	+1.3
2,540,141	+		Pf1N1B4_2229	0.11	-0.4
2,540,142	-		Pf1N1B4_2229	0.12	-0.5
2,540,207	+		Pf1N1B4_2229	0.16	+0.6
2,540,207	+		Pf1N1B4_2229	0.16	-0.3
2,540,207	+		Pf1N1B4_2229	0.16	+0.7
2,540,207	+		Pf1N1B4_2229	0.16	+0.6
2,540,208	-		Pf1N1B4_2229	0.16	-1.1
2,540,208	-		Pf1N1B4_2229	0.16	-1.7
2,540,231	-		Pf1N1B4_2229	0.18	-0.2
2,540,369	+		Pf1N1B4_2229	0.29	+1.3
2,540,369	+		Pf1N1B4_2229	0.29	+0.1
2,540,370	-		Pf1N1B4_2229	0.29	-0.3
2,540,370	-		Pf1N1B4_2229	0.29	-1.1
2,540,471	+		Pf1N1B4_2229	0.36	+1.0
2,540,471	+		Pf1N1B4_2229	0.36	-0.1
2,540,471	+		Pf1N1B4_2229	0.36	+0.3
2,540,471	+		Pf1N1B4_2229	0.36	+0.3
2,540,471	+		Pf1N1B4_2229	0.36	+2.1
2,540,471	+		Pf1N1B4_2229	0.36	+0.1
2,540,471	+		Pf1N1B4_2229	0.36	-0.3
2,540,471	+		Pf1N1B4_2229	0.36	+0.2
2,540,471	+		Pf1N1B4_2229	0.36	+0.9
2,540,472	-		Pf1N1B4_2229	0.36	-0.9
2,540,472	-		Pf1N1B4_2229	0.36	-1.2
2,540,472	-		Pf1N1B4_2229	0.36	-3.2
2,540,472	-		Pf1N1B4_2229	0.36	-1.4
2,540,510	+		Pf1N1B4_2229	0.39	-0.8
2,540,511	-		Pf1N1B4_2229	0.39	+1.9
2,540,511	-		Pf1N1B4_2229	0.39	-0.5
2,540,511	-		Pf1N1B4_2229	0.39	-1.7
2,540,511	-		Pf1N1B4_2229	0.39	+0.7
2,540,511	-		Pf1N1B4_2229	0.39	-1.1
2,540,511	-		Pf1N1B4_2229	0.39	-0.9
2,540,512	+		Pf1N1B4_2229	0.39	+0.2
2,540,512	+		Pf1N1B4_2229	0.39	+1.4
2,540,513	-		Pf1N1B4_2229	0.39	+0.8
2,540,513	-		Pf1N1B4_2229	0.39	-0.2
2,540,513	-		Pf1N1B4_2229	0.39	-1.7
2,540,513	-		Pf1N1B4_2229	0.39	-2.4
2,540,513	-		Pf1N1B4_2229	0.39	-0.5
2,540,513	-		Pf1N1B4_2229	0.39	-2.1
2,540,513	-		Pf1N1B4_2229	0.39	-2.6
2,540,513	-		Pf1N1B4_2229	0.39	+0.3
2,540,535	+		Pf1N1B4_2229	0.41	-0.7
2,540,535	+		Pf1N1B4_2229	0.41	-1.2
2,540,535	+		Pf1N1B4_2229	0.41	+0.8
2,540,535	+		Pf1N1B4_2229	0.41	-0.0
2,540,536	-		Pf1N1B4_2229	0.41	-0.9
2,540,536	-		Pf1N1B4_2229	0.41	-1.7
2,540,536	-		Pf1N1B4_2229	0.41	-1.1
2,540,536	-		Pf1N1B4_2229	0.41	-0.9
2,540,637	-		Pf1N1B4_2229	0.49	+0.1
2,540,672	+		Pf1N1B4_2229	0.51	+0.1
2,540,673	-		Pf1N1B4_2229	0.51	-0.2
2,540,673	-		Pf1N1B4_2229	0.51	-2.2
2,540,717	+				+1.1
2,540,717	+		Pf1N1B4_2229	0.55	+1.2
2,540,717	+		Pf1N1B4_2229	0.55	+0.3
2,540,789	+		Pf1N1B4_2229	0.60	-0.3
2,540,831	+		Pf1N1B4_2229	0.63	+0.1
2,540,831	+		Pf1N1B4_2229	0.63	+0.5
2,540,831	+		Pf1N1B4_2229	0.63	+0.1
2,540,831	+		Pf1N1B4_2229	0.63	-0.1
2,540,831	+		Pf1N1B4_2229	0.63	+0.7
2,540,831	+		Pf1N1B4_2229	0.63	-0.5
2,540,831	+		Pf1N1B4_2229	0.63	+0.4
2,540,831	+		Pf1N1B4_2229	0.63	-1.1
2,540,831	+		Pf1N1B4_2229	0.63	+1.9
2,540,831	+		Pf1N1B4_2229	0.63	+0.3
2,540,831	+		Pf1N1B4_2229	0.63	+0.5
2,540,831	+		Pf1N1B4_2229	0.63	-0.6
2,540,831	+		Pf1N1B4_2229	0.63	+0.6
2,540,831	+		Pf1N1B4_2229	0.63	+1.1
2,540,832	-		Pf1N1B4_2229	0.63	-1.2
2,540,832	-		Pf1N1B4_2229	0.63	-2.5
2,540,832	-		Pf1N1B4_2229	0.63	-1.2
2,540,832	-		Pf1N1B4_2229	0.63	-1.7
2,540,832	-		Pf1N1B4_2229	0.63	-1.2
2,540,832	-		Pf1N1B4_2229	0.63	-1.7
2,540,832	-		Pf1N1B4_2229	0.63	-0.2
2,540,832	-		Pf1N1B4_2229	0.63	-0.9
2,540,832	-		Pf1N1B4_2229	0.63	-1.9
2,540,832	-				+2.1
2,540,832	-		Pf1N1B4_2229	0.63	+0.1
2,540,832	-		Pf1N1B4_2229	0.63	-1.2
2,540,855	+		Pf1N1B4_2229	0.65	+0.6
2,540,855	+		Pf1N1B4_2229	0.65	-0.1
2,540,856	-		Pf1N1B4_2229	0.65	-0.5
2,540,856	-		Pf1N1B4_2229	0.65	-0.9
2,540,856	-		Pf1N1B4_2229	0.65	-0.9