Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1924

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
2,199,233	+		Pf1N1B4_1923	0.67	-0.7
2,199,233	+		Pf1N1B4_1923	0.67	-0.9
2,199,233	+		Pf1N1B4_1923	0.67	-0.3
2,199,234	-				+0.1
2,199,234	-		Pf1N1B4_1923	0.67	+0.1
2,199,234	-		Pf1N1B4_1923	0.67	-2.0
2,199,234	-		Pf1N1B4_1923	0.67	-1.0
2,199,234	-		Pf1N1B4_1923	0.67	+0.1
2,199,244	-		Pf1N1B4_1923	0.68	-0.5
2,199,244	-		Pf1N1B4_1923	0.68	+0.6
2,199,291	-		Pf1N1B4_1923	0.70	-2.5
2,199,291	-		Pf1N1B4_1923	0.70	+0.7
2,199,291	-		Pf1N1B4_1923	0.70	-1.1
2,199,350	+		Pf1N1B4_1923	0.73	-0.7
2,199,351	-		Pf1N1B4_1923	0.73	-0.2
2,199,381	+		Pf1N1B4_1923	0.74	-0.9
2,199,382	-		Pf1N1B4_1923	0.74	-0.7
2,199,382	-		Pf1N1B4_1923	0.74	+0.4
2,199,382	-		Pf1N1B4_1923	0.74	-0.9
2,199,382	-		Pf1N1B4_1923	0.74	-0.5
2,199,382	-		Pf1N1B4_1923	0.74	+0.2
2,199,382	-		Pf1N1B4_1923	0.74	+0.6
2,199,431	+		Pf1N1B4_1923	0.76	-0.1
2,199,431	+		Pf1N1B4_1923	0.76	+0.1
2,199,431	+		Pf1N1B4_1923	0.76	+0.1
2,199,432	-		Pf1N1B4_1923	0.76	-2.3
2,199,432	-		Pf1N1B4_1923	0.76	-0.3
2,199,436	-		Pf1N1B4_1923	0.76	+0.1
2,199,436	-		Pf1N1B4_1923	0.76	-1.0
2,199,436	-		Pf1N1B4_1923	0.76	+1.5
2,199,547	-		Pf1N1B4_1923	0.81	+0.5
2,199,655	+		Pf1N1B4_1923	0.86	-0.4
2,199,655	+		Pf1N1B4_1923	0.86	-0.6
2,199,757	+				+0.1
2,199,757	+				+1.1
2,199,757	+				-0.0
2,199,757	+				-0.2
2,199,757	+				-0.9
2,199,757	+				-0.2
2,199,757	+				+0.4
2,199,757	+				-0.7
2,199,757	+				-0.2
2,199,757	+				-0.1
2,199,758	-				+0.1
2,199,758	-				-0.2
2,199,758	-				+1.7
2,199,758	-				-2.0
2,199,758	-				-1.2
2,199,758	-				+0.1
2,199,758	-				-0.6
2,199,758	-				+0.6
2,199,758	-				+0.8
2,199,758	-				+0.0
2,199,758	-				-1.3
2,199,758	-				+0.1
2,199,758	-				-1.4
2,199,758	-				+0.3
2,199,758	-				+0.7
2,199,758	-				+0.8
2,199,758	-				+0.0
2,199,758	-				+1.1
2,199,758	-				+0.3
2,199,758	-				-0.4
2,199,758	-				+0.6
2,199,759	+				-0.4
2,199,759	+				+0.7
2,199,759	+				+1.4
2,199,759	+				+0.5
2,199,760	-				-1.0
2,199,760	-				-0.4
2,199,782	+				+0.9
2,199,783	-				+0.1
2,199,783	-				-1.4
2,199,828	+				-1.3
2,199,828	+				-0.1
2,199,829	-				-0.6
2,199,829	-				-0.3
2,199,829	-				+0.3
2,199,829	-				-1.2
2,200,030	-				-0.0
2,200,032	+				+0.1
2,200,044	+				-0.2
2,200,044	+				-0.9
2,200,044	+				-0.4
2,200,045	-				+0.1
2,200,045	-				+0.4
2,200,045	-				+0.3
2,200,080	+				-0.3
2,200,102	-		Pf1N1B4_1924	0.10	+0.6
2,200,102	-		Pf1N1B4_1924	0.10	+0.8
2,200,296	-		Pf1N1B4_1924	0.31	+0.7
2,200,296	-		Pf1N1B4_1924	0.31	-0.1
2,200,526	+		Pf1N1B4_1924	0.56	-0.1
2,200,526	+		Pf1N1B4_1924	0.56	-1.2
2,200,584	+		Pf1N1B4_1924	0.62	+1.1
2,200,584	+		Pf1N1B4_1924	0.62	+0.9
2,200,584	+		Pf1N1B4_1924	0.62	+0.1
2,200,585	-		Pf1N1B4_1924	0.62	-2.4
2,200,585	-		Pf1N1B4_1924	0.62	+0.0
2,200,585	-		Pf1N1B4_1924	0.62	+0.8
2,200,585	-		Pf1N1B4_1924	0.62	+0.1
2,200,585	-		Pf1N1B4_1924	0.62	+1.1
2,200,585	-		Pf1N1B4_1924	0.62	-0.9
2,200,585	-		Pf1N1B4_1924	0.62	-1.4
2,200,585	-		Pf1N1B4_1924	0.62	+0.1
2,200,585	-		Pf1N1B4_1924	0.62	+0.9
2,200,585	-		Pf1N1B4_1924	0.62	-0.3
2,200,585	-		Pf1N1B4_1924	0.62	-1.4
2,200,756	+				+0.6
2,200,756	+		Pf1N1B4_1924	0.80	+1.2
2,200,756	+		Pf1N1B4_1924	0.80	-2.0
2,200,756	+		Pf1N1B4_1924	0.80	+1.1
2,200,757	-		Pf1N1B4_1924	0.80	+0.5
2,200,757	-		Pf1N1B4_1924	0.80	+0.2
2,200,757	-		Pf1N1B4_1924	0.80	-0.4
2,200,757	-		Pf1N1B4_1924	0.80	+1.5
2,200,872	+				-1.4
2,200,872	+				-1.0
2,200,872	+				+0.1
2,200,872	+				-1.2
2,200,872	+				+1.1
2,200,872	+				-0.6
2,200,872	+				-1.0
2,200,872	+				+1.6
2,200,872	+				-1.1
2,200,872	+				+0.1
2,200,872	+				+1.9
2,200,872	+				+0.1
2,200,872	+				+0.1
2,200,872	+				+0.1
2,200,872	+				-1.0
2,200,872	+				+0.7
2,200,873	-				-0.7
2,200,873	-				+1.1
2,200,873	-				-0.6
2,200,873	-				+0.9
2,200,873	-				-0.9
2,200,873	-				+1.0
2,200,873	-				-0.4
2,200,873	-				-0.2
2,200,873	-				-1.7
2,200,873	-				-0.6
2,200,873	-				+0.6
2,200,946	+				-0.3
2,200,946	+				+0.3
2,200,946	+				+0.1
2,200,946	+				-0.2
2,200,979	+				-0.2
2,200,979	+				+0.7
2,200,979	+				-0.4
2,201,010	-				+2.1
2,201,010	-				-0.2
2,201,048	+				-0.4
2,201,048	+				+0.4
2,201,048	+				+0.5
2,201,048	+				-1.4
2,201,048	+				-1.1
2,201,048	+				+0.5
2,201,048	+				-0.3
2,201,048	+				+0.3
2,201,048	+				-0.6
2,201,048	+				-0.2
2,201,048	+				+0.7
2,201,049	-				+0.6
2,201,049	-				-0.3
2,201,049	-				+0.0
2,201,049	-				-0.5
2,201,049	-				+0.9
2,201,049	-				-0.4
2,201,049	-				+0.6
2,201,049	-				+1.9
2,201,049	-				-1.4
2,201,062	+				-0.7
2,201,062	+				-0.2
2,201,087	-				-0.3
2,201,106	-				+1.1
2,201,280	+				-0.3
2,201,280	+				+0.6
2,201,280	+				+0.6
2,201,280	+				-1.2
2,201,280	+				+0.9
2,201,281	-				-0.7
2,201,281	-				-0.4
2,201,281	-				+0.3
2,201,281	-				-1.7
2,201,281	-				-1.0
2,201,281	-				+0.6
2,201,333	+				+0.8
2,201,364	-				-1.1
2,201,489	+		Pf1N1B4_1925	0.14	+1.0
2,201,489	+		Pf1N1B4_1925	0.14	+0.8
2,201,489	+		Pf1N1B4_1925	0.14	+0.7
2,201,489	+		Pf1N1B4_1925	0.14	-0.4
2,201,489	+		Pf1N1B4_1925	0.14	-1.4
2,201,489	+		Pf1N1B4_1925	0.14	-0.2
2,201,489	+		Pf1N1B4_1925	0.14	+0.1
2,201,489	+		Pf1N1B4_1925	0.14	-1.2
2,201,489	+		Pf1N1B4_1925	0.14	+0.1
2,201,489	+		Pf1N1B4_1925	0.14	+1.5
2,201,490	-		Pf1N1B4_1925	0.14	+1.1
2,201,490	-		Pf1N1B4_1925	0.14	-2.0
2,201,490	-		Pf1N1B4_1925	0.14	-0.0
2,201,700	+		Pf1N1B4_1925	0.43	-0.4
2,201,700	+		Pf1N1B4_1925	0.43	+0.0
2,201,700	+		Pf1N1B4_1925	0.43	+0.1
2,201,701	-		Pf1N1B4_1925	0.43	+0.3
2,201,794	+		Pf1N1B4_1925	0.56	+0.6
2,201,794	+		Pf1N1B4_1925	0.56	-0.4
2,201,794	+				+0.7
2,201,794	+		Pf1N1B4_1925	0.56	-1.6
2,201,795	-		Pf1N1B4_1925	0.57	+0.2
2,201,795	-		Pf1N1B4_1925	0.57	-0.4
2,201,881	-		Pf1N1B4_1925	0.68	+1.3
2,201,934	+		Pf1N1B4_1925	0.76	-0.1
2,201,934	+		Pf1N1B4_1925	0.76	+0.0
2,201,935	-		Pf1N1B4_1925	0.76	-0.2
2,201,935	-		Pf1N1B4_1925	0.76	-1.4
2,201,935	-		Pf1N1B4_1925	0.76	+1.1
2,201,940	+		Pf1N1B4_1925	0.77	-1.4
2,201,940	+		Pf1N1B4_1925	0.77	+1.5
2,201,940	+		Pf1N1B4_1925	0.77	-0.3
2,201,940	+		Pf1N1B4_1925	0.77	+0.3
2,201,940	+		Pf1N1B4_1925	0.77	-0.1
2,201,940	+		Pf1N1B4_1925	0.77	-0.2
2,201,940	+		Pf1N1B4_1925	0.77	+0.0
2,201,940	+		Pf1N1B4_1925	0.77	+0.7
2,201,940	+		Pf1N1B4_1925	0.77	+1.1
2,201,940	+		Pf1N1B4_1925	0.77	+0.7
2,201,941	-		Pf1N1B4_1925	0.77	-0.1
2,201,941	-		Pf1N1B4_1925	0.77	-0.4
2,201,941	-		Pf1N1B4_1925	0.77	-0.7
2,201,941	-		Pf1N1B4_1925	0.77	+1.1
2,201,941	-		Pf1N1B4_1925	0.77	-0.7
2,201,941	-		Pf1N1B4_1925	0.77	-0.2
2,201,941	-		Pf1N1B4_1925	0.77	-0.7
2,201,941	-		Pf1N1B4_1925	0.77	-0.7
2,201,941	-		Pf1N1B4_1925	0.77	+1.6