Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1334

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1333 and Pf1N1B4_1334 are separated by 272 nucleotidesPf1N1B4_1334 and Pf1N1B4_1335 are separated by 48 nucleotidesPf1N1B4_1335 and Pf1N1B4_1336 are separated by 66 nucleotides Pf1N1B4_1333 - Cobalt-precorrin-6x reductase (EC 1.3.1.54), at 1,528,422 to 1,529,156 _1333 Pf1N1B4_1334 - FIG00955840: hypothetical protein, at 1,529,429 to 1,529,827 _1334 Pf1N1B4_1335 - Copper metallochaperone, bacterial analog of Cox17 protein, at 1,529,876 to 1,530,355 _1335 Pf1N1B4_1336 - Putative multicopper oxidases, at 1,530,422 to 1,530,826 _1336 Position (kb) 1529 1530Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strand, within Pf1N1B4_1333at 1528.497 kb on + strandat 1528.498 kb on - strand, within Pf1N1B4_1333at 1528.498 kb on - strand, within Pf1N1B4_1333at 1528.498 kb on - strand, within Pf1N1B4_1333at 1528.498 kb on - strand, within Pf1N1B4_1333at 1528.498 kb on - strand, within Pf1N1B4_1333at 1528.498 kb on - strand, within Pf1N1B4_1333at 1529.139 kb on + strandat 1529.139 kb on + strandat 1529.139 kb on + strandat 1529.140 kb on - strandat 1529.140 kb on - strandat 1529.140 kb on - strandat 1529.154 kb on + strandat 1529.154 kb on + strandat 1529.154 kb on + strandat 1529.154 kb on + strandat 1529.154 kb on + strandat 1529.154 kb on + strandat 1529.155 kb on - strandat 1529.155 kb on - strandat 1529.155 kb on - strandat 1529.155 kb on - strandat 1529.158 kb on + strandat 1529.158 kb on + strandat 1529.159 kb on - strandat 1529.277 kb on + strandat 1529.278 kb on - strandat 1529.363 kb on + strandat 1529.363 kb on + strandat 1529.364 kb on - strandat 1529.364 kb on - strandat 1529.364 kb on - strandat 1529.364 kb on - strandat 1529.385 kb on + strandat 1529.385 kb on + strandat 1529.385 kb on + strandat 1529.385 kb on + strandat 1529.385 kb on + strandat 1529.385 kb on + strandat 1529.386 kb on - strandat 1529.386 kb on - strandat 1529.389 kb on + strandat 1529.390 kb on - strandat 1529.390 kb on - strandat 1529.390 kb on - strandat 1529.717 kb on + strand, within Pf1N1B4_1334at 1529.717 kb on + strand, within Pf1N1B4_1334at 1529.717 kb on + strand, within Pf1N1B4_1334at 1529.718 kb on - strand, within Pf1N1B4_1334at 1529.721 kb on - strand, within Pf1N1B4_1334at 1529.774 kb on - strandat 1529.904 kb on + strandat 1529.905 kb on - strandat 1529.905 kb on - strandat 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.943 kb on - strand, within Pf1N1B4_1335at 1529.943 kb on - strand, within Pf1N1B4_1335at 1529.943 kb on - strand, within Pf1N1B4_1335at 1530.017 kb on + strand, within Pf1N1B4_1335at 1530.018 kb on - strand, within Pf1N1B4_1335at 1530.195 kb on - strand, within Pf1N1B4_1335at 1530.195 kb on - strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.202 kb on - strandat 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.340 kb on + strandat 1530.340 kb on + strandat 1530.340 kb on + strandat 1530.340 kb on + strandat 1530.341 kb on - strandat 1530.537 kb on + strand, within Pf1N1B4_1336at 1530.537 kb on + strand, within Pf1N1B4_1336at 1530.538 kb on - strand, within Pf1N1B4_1336at 1530.538 kb on - strand, within Pf1N1B4_1336at 1530.824 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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1,528,497 + Pf1N1B4_1333 0.10 +0.0
1,528,497 + Pf1N1B4_1333 0.10 -1.4
1,528,497 + Pf1N1B4_1333 0.10 -0.1
1,528,497 + Pf1N1B4_1333 0.10 +1.0
1,528,497 + Pf1N1B4_1333 0.10 +0.7
1,528,497 + Pf1N1B4_1333 0.10 +1.3
1,528,497 + Pf1N1B4_1333 0.10 +0.0
1,528,497 + Pf1N1B4_1333 0.10 +1.0
1,528,497 + Pf1N1B4_1333 0.10 +1.4
1,528,497 + Pf1N1B4_1333 0.10 +1.0
1,528,497 + Pf1N1B4_1333 0.10 +3.6
1,528,497 + Pf1N1B4_1333 0.10 +1.4
1,528,497 + Pf1N1B4_1333 0.10 -0.6
1,528,497 + Pf1N1B4_1333 0.10 -1.3
1,528,497 + Pf1N1B4_1333 0.10 -0.6
1,528,497 + -1.0
1,528,498 - Pf1N1B4_1333 0.10 +0.2
1,528,498 - Pf1N1B4_1333 0.10 +1.4
1,528,498 - Pf1N1B4_1333 0.10 +1.0
1,528,498 - Pf1N1B4_1333 0.10 +0.2
1,528,498 - Pf1N1B4_1333 0.10 +0.4
1,528,498 - Pf1N1B4_1333 0.10 +0.0
1,529,139 + -0.9
1,529,139 + +0.5
1,529,139 + +1.4
1,529,140 - +0.3
1,529,140 - +0.0
1,529,140 - -0.1
1,529,154 + +0.3
1,529,154 + -0.8
1,529,154 + +0.1
1,529,154 + +1.0
1,529,154 + +0.4
1,529,154 + +0.5
1,529,155 - +1.3
1,529,155 - +0.0
1,529,155 - +0.1
1,529,155 - -1.3
1,529,158 + -1.4
1,529,158 + -1.6
1,529,159 - -2.0
1,529,277 + +0.7
1,529,278 - -1.6
1,529,363 + -0.4
1,529,363 + -1.1
1,529,364 - +0.0
1,529,364 - -1.1
1,529,364 - +0.1
1,529,364 - +0.3
1,529,385 + +1.3
1,529,385 + -0.2
1,529,385 + -0.2
1,529,385 + +0.2
1,529,385 + +0.0
1,529,385 + -0.7
1,529,386 - -1.4
1,529,386 - -1.3
1,529,389 + +0.0
1,529,390 - -0.1
1,529,390 - -0.5
1,529,390 - -1.3
1,529,717 + Pf1N1B4_1334 0.72 -0.6
1,529,717 + Pf1N1B4_1334 0.72 +1.3
1,529,717 + Pf1N1B4_1334 0.72 -1.0
1,529,718 - Pf1N1B4_1334 0.72 -1.0
1,529,721 - Pf1N1B4_1334 0.73 -1.2
1,529,774 - +0.0
1,529,904 + -0.6
1,529,905 - -2.3
1,529,905 - +0.7
1,529,942 + Pf1N1B4_1335 0.14 +1.0
1,529,942 + Pf1N1B4_1335 0.14 +0.2
1,529,942 + Pf1N1B4_1335 0.14 -1.3
1,529,942 + Pf1N1B4_1335 0.14 -1.1
1,529,942 + Pf1N1B4_1335 0.14 +0.6
1,529,943 - Pf1N1B4_1335 0.14 -1.1
1,529,943 - Pf1N1B4_1335 0.14 -2.6
1,529,943 - Pf1N1B4_1335 0.14 -1.8
1,530,017 + Pf1N1B4_1335 0.29 -2.0
1,530,018 - Pf1N1B4_1335 0.30 +0.8
1,530,195 - Pf1N1B4_1335 0.66 -1.1
1,530,195 - Pf1N1B4_1335 0.66 -1.4
1,530,201 + Pf1N1B4_1335 0.68 -1.0
1,530,201 + Pf1N1B4_1335 0.68 +0.5
1,530,201 + Pf1N1B4_1335 0.68 +0.4
1,530,201 + Pf1N1B4_1335 0.68 +0.8
1,530,201 + Pf1N1B4_1335 0.68 +1.4
1,530,202 - -1.3
1,530,202 - Pf1N1B4_1335 0.68 -0.6
1,530,202 - Pf1N1B4_1335 0.68 -1.3
1,530,202 - Pf1N1B4_1335 0.68 -2.3
1,530,202 - Pf1N1B4_1335 0.68 -0.7
1,530,202 - Pf1N1B4_1335 0.68 -0.1
1,530,340 + -1.0
1,530,340 + -0.3
1,530,340 + -0.1
1,530,340 + +0.4
1,530,341 - +0.0
1,530,537 + Pf1N1B4_1336 0.28 -2.3
1,530,537 + Pf1N1B4_1336 0.28 +0.7
1,530,538 - Pf1N1B4_1336 0.29 +0.6
1,530,538 - Pf1N1B4_1336 0.29 +0.8
1,530,824 + +0.3

Or see this region's nucleotide sequence