Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08635

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08630 and MMP_RS08635 are separated by 13 nucleotidesMMP_RS08635 and MMP_RS08640 are separated by 73 nucleotidesMMP_RS08640 and MMP_RS08645 are separated by 3 nucleotides MMP_RS08630: MMP_RS08630 - archaellar assembly protein FlaJ, at 1,617,174 to 1,618,850 _RS08630 MMP_RS08635: MMP_RS08635 - UbiA family prenyltransferase, at 1,618,864 to 1,619,700 _RS08635 MMP_RS08640: MMP_RS08640 - TIM barrel protein, at 1,619,774 to 1,620,595 _RS08640 MMP_RS08645: MMP_RS08645 - UPF0179 family protein, at 1,620,599 to 1,621,036 _RS08645 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -3 -2 -1 0 1at 1617.880 kb on - strand, within MMP_RS08630at 1618.006 kb on - strand, within MMP_RS08630at 1618.007 kb on + strand, within MMP_RS08630at 1618.007 kb on + strand, within MMP_RS08630at 1618.010 kb on - strand, within MMP_RS08630at 1618.010 kb on - strand, within MMP_RS08630at 1618.234 kb on - strand, within MMP_RS08630at 1618.290 kb on - strand, within MMP_RS08630at 1618.301 kb on + strand, within MMP_RS08630at 1618.590 kb on + strand, within MMP_RS08630at 1618.670 kb on + strand, within MMP_RS08630at 1618.765 kb on - strandat 1618.765 kb on - strandat 1618.810 kb on - strandat 1618.976 kb on - strand, within MMP_RS08635at 1618.977 kb on + strand, within MMP_RS08635at 1619.025 kb on + strand, within MMP_RS08635at 1619.102 kb on - strand, within MMP_RS08635at 1619.105 kb on + strand, within MMP_RS08635at 1619.390 kb on + strand, within MMP_RS08635at 1619.725 kb on + strandat 1619.728 kb on - strandat 1619.740 kb on - strandat 1619.851 kb on - strandat 1619.938 kb on - strand, within MMP_RS08640at 1619.960 kb on - strand, within MMP_RS08640at 1619.960 kb on - strand, within MMP_RS08640at 1619.963 kb on - strand, within MMP_RS08640at 1619.974 kb on + strand, within MMP_RS08640at 1620.010 kb on - strand, within MMP_RS08640at 1620.045 kb on - strand, within MMP_RS08640at 1620.236 kb on + strand, within MMP_RS08640at 1620.300 kb on - strand, within MMP_RS08640at 1620.300 kb on - strand, within MMP_RS08640at 1620.301 kb on + strand, within MMP_RS08640at 1620.301 kb on + strand, within MMP_RS08640at 1620.350 kb on + strand, within MMP_RS08640at 1620.352 kb on + strand, within MMP_RS08640at 1620.581 kb on - strandat 1620.591 kb on - strandat 1620.592 kb on + strandat 1620.656 kb on - strand, within MMP_RS08645at 1620.656 kb on - strand, within MMP_RS08645at 1620.671 kb on - strand, within MMP_RS08645at 1620.672 kb on + strand, within MMP_RS08645at 1620.672 kb on + strand, within MMP_RS08645at 1620.672 kb on + strand, within MMP_RS08645

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE
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1,617,880 - MMP_RS08630 0.42 +0.1
1,618,006 - MMP_RS08630 0.50 -0.5
1,618,007 + MMP_RS08630 0.50 +0.3
1,618,007 + MMP_RS08630 0.50 -0.1
1,618,010 - MMP_RS08630 0.50 +0.4
1,618,010 - MMP_RS08630 0.50 +0.2
1,618,234 - MMP_RS08630 0.63 -0.4
1,618,290 - MMP_RS08630 0.67 +0.2
1,618,301 + MMP_RS08630 0.67 +1.2
1,618,590 + MMP_RS08630 0.84 -0.3
1,618,670 + MMP_RS08630 0.89 -0.0
1,618,765 - +0.1
1,618,765 - +0.5
1,618,810 - -0.0
1,618,976 - MMP_RS08635 0.13 -2.6
1,618,977 + MMP_RS08635 0.14 -3.5
1,619,025 + MMP_RS08635 0.19 -0.5
1,619,102 - MMP_RS08635 0.28 -1.6
1,619,105 + MMP_RS08635 0.29 -0.7
1,619,390 + MMP_RS08635 0.63 -2.7
1,619,725 + -0.3
1,619,728 - -0.2
1,619,740 - +0.1
1,619,851 - -0.4
1,619,938 - MMP_RS08640 0.20 +0.2
1,619,960 - MMP_RS08640 0.23 +0.5
1,619,960 - MMP_RS08640 0.23 +0.3
1,619,963 - MMP_RS08640 0.23 -0.1
1,619,974 + MMP_RS08640 0.24 +0.5
1,620,010 - MMP_RS08640 0.29 +0.5
1,620,045 - MMP_RS08640 0.33 +0.0
1,620,236 + MMP_RS08640 0.56 +0.6
1,620,300 - MMP_RS08640 0.64 +0.4
1,620,300 - MMP_RS08640 0.64 +0.5
1,620,301 + MMP_RS08640 0.64 +0.3
1,620,301 + MMP_RS08640 0.64 +0.1
1,620,350 + MMP_RS08640 0.70 +0.5
1,620,352 + MMP_RS08640 0.70 +0.4
1,620,581 - +0.3
1,620,591 - -0.1
1,620,592 + +0.0
1,620,656 - MMP_RS08645 0.13 +0.8
1,620,656 - MMP_RS08645 0.13 +0.2
1,620,671 - MMP_RS08645 0.16 +1.1
1,620,672 + MMP_RS08645 0.17 -0.4
1,620,672 + MMP_RS08645 0.17 -1.0
1,620,672 + MMP_RS08645 0.17 -0.7

Or see this region's nucleotide sequence