Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17035

Experiment: Control soil assay; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control soil assay; outgrowth in LB
3,898,444	-				-0.4
3,898,489	+		HSERO_RS17030	0.71	+0.5
3,898,525	+		HSERO_RS17030	0.73	-0.3
3,898,548	-		HSERO_RS17030	0.75	+0.1
3,898,613	+		HSERO_RS17030	0.79	-0.9
3,898,621	-		HSERO_RS17030	0.79	-0.9
3,898,709	-		HSERO_RS17030	0.85	+0.2
3,898,796	-				-0.3
3,898,838	-				+0.4
3,898,876	+				+0.9
3,898,942	+				+0.2
3,898,950	-				-0.4
3,899,024	+				+0.3
3,899,032	-				-0.1
3,899,053	+				+0.6
3,899,125	+				-0.6
3,899,438	+				+1.1
3,899,529	-		HSERO_RS17035	0.11	+0.9
3,899,537	-		HSERO_RS17035	0.11	+0.3
3,899,984	+		HSERO_RS17035	0.29	+1.4
3,900,163	-		HSERO_RS17035	0.36	-0.3
3,900,180	-		HSERO_RS17035	0.37	+0.1
3,900,200	+		HSERO_RS17035	0.38	+1.7
3,900,209	-		HSERO_RS17035	0.38	+1.0
3,900,209	-		HSERO_RS17035	0.38	-0.7
3,900,430	+		HSERO_RS17035	0.47	-0.5
3,900,430	+				+0.7
3,900,430	+		HSERO_RS17035	0.47	+0.3
3,900,438	-		HSERO_RS17035	0.47	+0.5
3,900,457	+		HSERO_RS17035	0.48	-0.2
3,900,464	-		HSERO_RS17035	0.48	+0.6
3,900,555	+		HSERO_RS17035	0.52	+0.1
3,900,670	+		HSERO_RS17035	0.57	-0.8
3,900,678	-		HSERO_RS17035	0.57	+0.3
3,900,678	-		HSERO_RS17035	0.57	-1.0
3,900,678	-		HSERO_RS17035	0.57	+0.4
3,900,776	+		HSERO_RS17035	0.61	+0.6
3,900,781	+		HSERO_RS17035	0.61	-0.7
3,900,853	-		HSERO_RS17035	0.64	+1.1
3,900,879	+		HSERO_RS17035	0.65	+0.1
3,900,973	-		HSERO_RS17035	0.69	-0.2
3,901,016	+		HSERO_RS17035	0.71	-0.1
3,901,021	+		HSERO_RS17035	0.71	+0.1
3,901,029	-		HSERO_RS17035	0.71	+0.1
3,901,036	-		HSERO_RS17035	0.71	+0.1
3,901,067	+		HSERO_RS17035	0.73	-0.1
3,901,076	+		HSERO_RS17035	0.73	-2.4
3,901,098	+		HSERO_RS17035	0.74	+1.2
3,901,099	+		HSERO_RS17035	0.74	-1.6
3,901,113	+		HSERO_RS17035	0.74	-0.1
3,901,116	+		HSERO_RS17035	0.75	+0.6
3,901,124	-		HSERO_RS17035	0.75	+0.4
3,901,167	+		HSERO_RS17035	0.77	-0.3
3,901,187	+		HSERO_RS17035	0.77	-0.7
3,901,237	-		HSERO_RS17035	0.79	+0.9
3,901,237	-		HSERO_RS17035	0.79	-0.4
3,901,247	-		HSERO_RS17035	0.80	-0.2
3,901,296	+		HSERO_RS17035	0.82	-0.6
3,901,302	+		HSERO_RS17035	0.82	-0.2
3,901,302	+		HSERO_RS17035	0.82	-0.3
3,901,302	+		HSERO_RS17035	0.82	+0.5
3,901,310	-		HSERO_RS17035	0.82	+1.0
3,901,310	-		HSERO_RS17035	0.82	+1.1
3,901,327	+		HSERO_RS17035	0.83	+0.8
3,901,340	-		HSERO_RS17035	0.84	-0.7
3,901,341	+		HSERO_RS17035	0.84	+0.2
3,901,346	+		HSERO_RS17035	0.84	+0.2
3,901,364	+		HSERO_RS17035	0.85	-0.1
3,901,372	-		HSERO_RS17035	0.85	+0.3
3,901,372	-		HSERO_RS17035	0.85	+0.6
3,901,392	+		HSERO_RS17035	0.86	-1.4
3,901,402	+		HSERO_RS17035	0.86	+0.7
3,901,402	+		HSERO_RS17035	0.86	+0.9
3,901,402	+		HSERO_RS17035	0.86	+2.3
3,901,402	+		HSERO_RS17035	0.86	-0.3
3,901,410	-		HSERO_RS17035	0.86	+0.1
3,901,412	+		HSERO_RS17035	0.87	+0.3
3,901,412	+		HSERO_RS17035	0.87	+3.9
3,901,420	-		HSERO_RS17035	0.87	+0.2
3,901,420	-		HSERO_RS17035	0.87	-0.5
3,901,441	-		HSERO_RS17035	0.88	-0.1
3,901,442	-		HSERO_RS17035	0.88	+0.5
3,901,455	+				+0.3
3,901,463	+		HSERO_RS17035	0.89	+0.4
3,901,463	+		HSERO_RS17035	0.89	+0.7
3,901,463	+		HSERO_RS17035	0.89	-0.4
3,901,463	-		HSERO_RS17035	0.89	+0.2
3,901,468	-		HSERO_RS17035	0.89	+0.1
3,901,485	-		HSERO_RS17035	0.89	+0.5
3,901,485	-		HSERO_RS17035	0.89	+0.9
3,901,485	-		HSERO_RS17035	0.89	+0.1
3,901,523	+				+0.6
3,901,524	+				+0.3
3,901,528	+				+0.4
3,901,528	+				-0.2
3,901,531	-				-0.2
3,901,532	+				+0.1
3,901,542	+				+0.1
3,901,550	-				+0.5
3,901,550	-				-0.2
3,901,556	+				+0.5
3,901,561	+				+0.4
3,901,569	-				+0.3
3,901,573	+				+0.1
3,901,579	-				+0.3
3,901,591	+				+0.6
3,901,591	+				+0.1
3,901,593	+				-0.1
3,901,599	-				+0.3
3,901,603	+				+1.1
3,901,609	+				-0.9
3,901,609	+				+0.6
3,901,610	+				+1.0
3,901,610	+				+0.6
3,901,610	+				+0.3
3,901,610	+				+1.1
3,901,610	+				-0.1
3,901,610	+				+0.2
3,901,610	+				+0.3
3,901,610	+				-0.4
3,901,611	-				+0.3
3,901,616	-				+0.3
3,901,617	-				-0.4
3,901,617	-				-0.6
3,901,618	-				+0.7
3,901,618	-				+0.3
3,901,618	-				+0.9
3,901,618	-				-0.9
3,901,618	-				+0.2
3,901,639	+				+1.5
3,901,640	+				+1.5
3,901,646	+				+1.0
3,901,646	+				+0.0
3,901,646	+				+0.3
3,901,646	+				+0.0
3,901,647	-				-0.6
3,901,647	-				+1.9
3,901,647	-				-0.1
3,901,654	-				+0.1
3,901,654	-				+0.3
3,901,660	+				-2.0
3,901,660	+				+0.2
3,901,660	+				+0.3
3,901,660	+				+0.2
3,901,674	-				-0.1
3,901,726	+				-0.2
3,901,726	+				+0.5
3,901,733	+				-1.3
3,901,734	-				+0.5
3,901,734	-				+0.5
3,901,734	-				-0.5
3,901,734	-				+0.1
3,901,735	+				-0.7
3,901,741	-				+0.1
3,901,747	+				-0.2
3,901,751	+				+0.2
3,901,755	-				-0.4
3,901,760	-				+0.4
3,901,782	+				-0.4
3,901,782	+				+1.0
3,901,782	+				-0.7
3,901,790	-				-0.3
3,901,790	-				-0.5
3,901,790	-				+0.3
3,901,864	-				+0.6
3,901,875	+		HSERO_RS17040	0.10	-0.8
3,901,885	-		HSERO_RS17040	0.11	-0.3
3,901,907	-		HSERO_RS17040	0.13	-0.0
3,901,917	+		HSERO_RS17040	0.14	-1.4
3,901,917	+		HSERO_RS17040	0.14	+0.3
3,901,917	+		HSERO_RS17040	0.14	+0.9
3,901,917	+		HSERO_RS17040	0.14	-0.3
3,901,920	+		HSERO_RS17040	0.15	+1.3
3,901,925	-		HSERO_RS17040	0.15	-0.7
3,901,925	-		HSERO_RS17040	0.15	-1.0
3,901,925	-		HSERO_RS17040	0.15	+0.0
3,901,925	-		HSERO_RS17040	0.15	-1.3
3,901,925	-		HSERO_RS17040	0.15	+0.8
3,901,933	-		HSERO_RS17040	0.16	+0.2
3,901,943	+		HSERO_RS17040	0.17	-0.3
3,901,945	+		HSERO_RS17040	0.17	-0.6
3,901,945	+				+1.6
3,901,951	+		HSERO_RS17040	0.18	-1.8
3,901,951	+		HSERO_RS17040	0.18	+0.1
3,901,953	-		HSERO_RS17040	0.18	-0.9
3,901,953	-		HSERO_RS17040	0.18	+0.2
3,901,953	-		HSERO_RS17040	0.18	-0.1
3,901,953	-		HSERO_RS17040	0.18	+0.3
3,901,965	+		HSERO_RS17040	0.19	+2.2
3,901,997	+				-1.1
3,901,998	+		HSERO_RS17040	0.22	-0.2
3,902,002	+		HSERO_RS17040	0.22	+0.7
3,902,005	-		HSERO_RS17040	0.23	-0.8
3,902,005	-		HSERO_RS17040	0.23	-0.1
3,902,010	-		HSERO_RS17040	0.23	-0.3
3,902,024	+		HSERO_RS17040	0.24	+1.4
3,902,029	+		HSERO_RS17040	0.25	+0.6
3,902,029	+		HSERO_RS17040	0.25	+0.2
3,902,029	+		HSERO_RS17040	0.25	+0.2
3,902,044	-		HSERO_RS17040	0.26	-0.3
3,902,046	+		HSERO_RS17040	0.26	+0.1
3,902,051	+		HSERO_RS17040	0.27	-0.6
3,902,059	+		HSERO_RS17040	0.28	+0.3
3,902,059	+		HSERO_RS17040	0.28	+0.6
3,902,059	+				+0.9
3,902,059	-		HSERO_RS17040	0.28	+1.2
3,902,067	-		HSERO_RS17040	0.28	+1.4
3,902,067	-		HSERO_RS17040	0.28	-0.0
3,902,067	-		HSERO_RS17040	0.28	+0.0
3,902,078	+		HSERO_RS17040	0.29	+0.0
3,902,110	+		HSERO_RS17040	0.32	-0.5
3,902,110	+		HSERO_RS17040	0.32	+0.7
3,902,115	+		HSERO_RS17040	0.33	+0.3
3,902,117	-		HSERO_RS17040	0.33	+0.8
3,902,118	-		HSERO_RS17040	0.33	+2.2
3,902,135	+		HSERO_RS17040	0.35	-0.3
3,902,148	-		HSERO_RS17040	0.36	-1.8
3,902,148	-		HSERO_RS17040	0.36	+0.1
3,902,150	+		HSERO_RS17040	0.36	+0.1
3,902,206	+		HSERO_RS17040	0.41	+0.8
3,902,253	+		HSERO_RS17040	0.46	+0.4
3,902,275	+		HSERO_RS17040	0.48	+0.9
3,902,275	+		HSERO_RS17040	0.48	+0.1
3,902,283	-		HSERO_RS17040	0.48	+0.2
3,902,283	-		HSERO_RS17040	0.48	-0.2
3,902,304	-		HSERO_RS17040	0.50	+0.3
3,902,307	+		HSERO_RS17040	0.51	+0.5
3,902,315	-		HSERO_RS17040	0.51	-0.1
3,902,315	-		HSERO_RS17040	0.51	-0.6
3,902,325	-		HSERO_RS17040	0.52	+1.0
3,902,335	+		HSERO_RS17040	0.53	+1.1
3,902,351	-		HSERO_RS17040	0.55	-0.1
3,902,351	-		HSERO_RS17040	0.55	+0.4
3,902,380	+		HSERO_RS17040	0.57	-0.0
3,902,388	-		HSERO_RS17040	0.58	+0.1
3,902,440	+		HSERO_RS17040	0.63	+1.1
3,902,440	+		HSERO_RS17040	0.63	-1.4
3,902,470	+		HSERO_RS17040	0.66	-0.2
3,902,490	-		HSERO_RS17040	0.68	-0.4
3,902,586	+		HSERO_RS17040	0.77	-0.3
3,902,593	-				-0.9
3,902,624	-		HSERO_RS17040	0.80	+0.2
3,902,648	-		HSERO_RS17040	0.82	+0.8
3,902,692	+				+5.0