Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07665

Experiment: Control soil assay; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07660 and HSERO_RS07665 are separated by 64 nucleotidesHSERO_RS07665 and HSERO_RS07670 are separated by 149 nucleotides HSERO_RS07660: HSERO_RS07660 - RND transporter, at 1,750,085 to 1,751,608 _RS07660 HSERO_RS07665: HSERO_RS07665 - anthranilate synthase, at 1,751,673 to 1,753,520 _RS07665 HSERO_RS07670: HSERO_RS07670 - major facilitator transporter, at 1,753,670 to 1,755,073 _RS07670 Position (kb) 1751 1752 1753 1754Strain fitness (log2 ratio) -2 -1 0 1 2at 1750.787 kb on - strand, within HSERO_RS07660at 1751.041 kb on + strand, within HSERO_RS07660at 1751.072 kb on - strand, within HSERO_RS07660at 1751.246 kb on - strand, within HSERO_RS07660at 1751.329 kb on - strand, within HSERO_RS07660at 1751.385 kb on - strand, within HSERO_RS07660at 1751.431 kb on - strand, within HSERO_RS07660at 1751.854 kb on - strandat 1751.923 kb on - strand, within HSERO_RS07665at 1752.045 kb on + strand, within HSERO_RS07665at 1752.077 kb on - strand, within HSERO_RS07665at 1752.116 kb on - strand, within HSERO_RS07665at 1752.159 kb on + strand, within HSERO_RS07665at 1752.266 kb on + strand, within HSERO_RS07665at 1752.315 kb on + strandat 1752.408 kb on + strand, within HSERO_RS07665at 1752.442 kb on - strand, within HSERO_RS07665at 1752.530 kb on - strand, within HSERO_RS07665at 1752.625 kb on + strand, within HSERO_RS07665at 1752.661 kb on - strand, within HSERO_RS07665at 1752.768 kb on - strand, within HSERO_RS07665at 1752.886 kb on + strand, within HSERO_RS07665at 1752.956 kb on - strand, within HSERO_RS07665at 1753.349 kb on + strandat 1753.371 kb on + strandat 1753.384 kb on - strandat 1753.389 kb on - strandat 1753.458 kb on - strandat 1753.610 kb on + strandat 1753.671 kb on + strandat 1753.735 kb on - strandat 1753.764 kb on - strandat 1753.814 kb on - strand, within HSERO_RS07670at 1753.818 kb on + strand, within HSERO_RS07670at 1753.826 kb on - strand, within HSERO_RS07670at 1753.826 kb on - strand, within HSERO_RS07670at 1753.926 kb on + strand, within HSERO_RS07670at 1754.224 kb on + strand, within HSERO_RS07670at 1754.231 kb on + strand, within HSERO_RS07670at 1754.299 kb on - strand, within HSERO_RS07670at 1754.301 kb on - strand, within HSERO_RS07670at 1754.334 kb on + strand, within HSERO_RS07670at 1754.453 kb on - strand, within HSERO_RS07670

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Per-strain Table

Position Strand Gene LocusTag Fraction Control soil assay; outgrowth in LB
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1,750,787 - HSERO_RS07660 0.46 -1.1
1,751,041 + HSERO_RS07660 0.63 -1.6
1,751,072 - HSERO_RS07660 0.65 +0.3
1,751,246 - HSERO_RS07660 0.76 +0.3
1,751,329 - HSERO_RS07660 0.82 +2.2
1,751,385 - HSERO_RS07660 0.85 -0.1
1,751,431 - HSERO_RS07660 0.88 -0.2
1,751,854 - -0.6
1,751,923 - HSERO_RS07665 0.14 +0.4
1,752,045 + HSERO_RS07665 0.20 -2.0
1,752,077 - HSERO_RS07665 0.22 -0.3
1,752,116 - HSERO_RS07665 0.24 +0.4
1,752,159 + HSERO_RS07665 0.26 -1.4
1,752,266 + HSERO_RS07665 0.32 -0.4
1,752,315 + -1.5
1,752,408 + HSERO_RS07665 0.40 +0.0
1,752,442 - HSERO_RS07665 0.42 -0.2
1,752,530 - HSERO_RS07665 0.46 -0.2
1,752,625 + HSERO_RS07665 0.52 -1.9
1,752,661 - HSERO_RS07665 0.53 -0.0
1,752,768 - HSERO_RS07665 0.59 -1.3
1,752,886 + HSERO_RS07665 0.66 -0.2
1,752,956 - HSERO_RS07665 0.69 -2.1
1,753,349 + +0.3
1,753,371 + -1.2
1,753,384 - -0.8
1,753,389 - +0.2
1,753,458 - +0.5
1,753,610 + -0.4
1,753,671 + -1.1
1,753,735 - -0.5
1,753,764 - -1.5
1,753,814 - HSERO_RS07670 0.10 -0.9
1,753,818 + HSERO_RS07670 0.11 -0.7
1,753,826 - HSERO_RS07670 0.11 -0.6
1,753,826 - HSERO_RS07670 0.11 +0.0
1,753,926 + HSERO_RS07670 0.18 -0.2
1,754,224 + HSERO_RS07670 0.39 -0.4
1,754,231 + HSERO_RS07670 0.40 -0.2
1,754,299 - HSERO_RS07670 0.45 -0.4
1,754,301 - HSERO_RS07670 0.45 -0.2
1,754,334 + HSERO_RS07670 0.47 +0.5
1,754,453 - HSERO_RS07670 0.56 -0.1

Or see this region's nucleotide sequence