Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06445

Experiment: Control soil assay; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06440 and HSERO_RS06445 are separated by 195 nucleotidesHSERO_RS06445 and HSERO_RS06450 are separated by 168 nucleotides HSERO_RS06440: HSERO_RS06440 - membrane protein, at 1,453,771 to 1,454,880 _RS06440 HSERO_RS06445: HSERO_RS06445 - membrane protein, at 1,455,076 to 1,456,512 _RS06445 HSERO_RS06450: HSERO_RS06450 - dihydrodipicolinate synthetase, at 1,456,681 to 1,457,598 _RS06450 Position (kb) 1455 1456 1457Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1454.077 kb on + strand, within HSERO_RS06440at 1454.085 kb on - strand, within HSERO_RS06440at 1454.086 kb on - strand, within HSERO_RS06440at 1454.216 kb on + strand, within HSERO_RS06440at 1454.248 kb on + strand, within HSERO_RS06440at 1454.363 kb on + strand, within HSERO_RS06440at 1454.499 kb on - strand, within HSERO_RS06440at 1454.536 kb on + strand, within HSERO_RS06440at 1454.539 kb on - strand, within HSERO_RS06440at 1454.563 kb on + strand, within HSERO_RS06440at 1454.715 kb on + strand, within HSERO_RS06440at 1454.737 kb on + strand, within HSERO_RS06440at 1454.745 kb on - strand, within HSERO_RS06440at 1454.755 kb on - strand, within HSERO_RS06440at 1454.825 kb on - strandat 1455.316 kb on - strand, within HSERO_RS06445at 1455.399 kb on - strand, within HSERO_RS06445at 1455.426 kb on + strand, within HSERO_RS06445at 1455.479 kb on + strand, within HSERO_RS06445at 1455.732 kb on + strand, within HSERO_RS06445at 1455.771 kb on + strand, within HSERO_RS06445at 1455.990 kb on + strand, within HSERO_RS06445at 1456.025 kb on + strand, within HSERO_RS06445at 1456.029 kb on + strand, within HSERO_RS06445at 1456.142 kb on + strand, within HSERO_RS06445at 1456.142 kb on + strand, within HSERO_RS06445at 1456.295 kb on + strand, within HSERO_RS06445at 1456.371 kb on - strandat 1456.706 kb on + strandat 1456.859 kb on + strand, within HSERO_RS06450at 1456.898 kb on + strand, within HSERO_RS06450at 1456.959 kb on - strand, within HSERO_RS06450at 1456.969 kb on + strand, within HSERO_RS06450at 1456.996 kb on - strand, within HSERO_RS06450at 1457.028 kb on + strandat 1457.276 kb on + strand, within HSERO_RS06450at 1457.276 kb on + strand, within HSERO_RS06450at 1457.284 kb on - strand, within HSERO_RS06450at 1457.294 kb on - strand, within HSERO_RS06450at 1457.492 kb on - strand, within HSERO_RS06450at 1457.512 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control soil assay; outgrowth in LB
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1,454,077 + HSERO_RS06440 0.28 -0.5
1,454,085 - HSERO_RS06440 0.28 -0.6
1,454,086 - HSERO_RS06440 0.28 -0.4
1,454,216 + HSERO_RS06440 0.40 -3.5
1,454,248 + HSERO_RS06440 0.43 -0.3
1,454,363 + HSERO_RS06440 0.53 -0.6
1,454,499 - HSERO_RS06440 0.66 -0.4
1,454,536 + HSERO_RS06440 0.69 -0.0
1,454,539 - HSERO_RS06440 0.69 +0.9
1,454,563 + HSERO_RS06440 0.71 +0.6
1,454,715 + HSERO_RS06440 0.85 -2.5
1,454,737 + HSERO_RS06440 0.87 +1.9
1,454,745 - HSERO_RS06440 0.88 +0.1
1,454,755 - HSERO_RS06440 0.89 -0.5
1,454,825 - +0.6
1,455,316 - HSERO_RS06445 0.17 -3.1
1,455,399 - HSERO_RS06445 0.22 -1.1
1,455,426 + HSERO_RS06445 0.24 -1.1
1,455,479 + HSERO_RS06445 0.28 +0.4
1,455,732 + HSERO_RS06445 0.46 -0.1
1,455,771 + HSERO_RS06445 0.48 -0.5
1,455,990 + HSERO_RS06445 0.64 -1.4
1,456,025 + HSERO_RS06445 0.66 +0.9
1,456,029 + HSERO_RS06445 0.66 +0.2
1,456,142 + HSERO_RS06445 0.74 +0.6
1,456,142 + HSERO_RS06445 0.74 -0.1
1,456,295 + HSERO_RS06445 0.85 +0.2
1,456,371 - -0.6
1,456,706 + -0.1
1,456,859 + HSERO_RS06450 0.19 +0.4
1,456,898 + HSERO_RS06450 0.24 +0.8
1,456,959 - HSERO_RS06450 0.30 -0.7
1,456,969 + HSERO_RS06450 0.31 -2.0
1,456,996 - HSERO_RS06450 0.34 +1.1
1,457,028 + -0.1
1,457,276 + HSERO_RS06450 0.65 -0.8
1,457,276 + HSERO_RS06450 0.65 -0.5
1,457,284 - HSERO_RS06450 0.66 +1.1
1,457,294 - HSERO_RS06450 0.67 +0.5
1,457,492 - HSERO_RS06450 0.88 -0.2
1,457,512 + -0.2

Or see this region's nucleotide sequence