Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03768 and CCNA_03769 are separated by 341 nucleotides CCNA_03769 and CCNA_03770 are separated by 131 nucleotides
CCNA_03768: CCNA_03768 - signal recognition particle GTPase, SRP, at 3,935,365 to 3,936,891
_03768
CCNA_03769: CCNA_03769 - hypothetical protein, at 3,937,233 to 3,937,739
_03769
CCNA_03770: CCNA_03770 - malate dehydrogenase, at 3,937,871 to 3,938,833
_03770
Position (kb)
3937
3938 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3937.075 kb on + strand at 3937.083 kb on - strand at 3937.083 kb on - strand at 3937.090 kb on + strand at 3937.099 kb on - strand at 3937.139 kb on + strand at 3937.139 kb on + strand at 3937.153 kb on + strand at 3937.153 kb on + strand at 3937.161 kb on - strand at 3937.188 kb on + strand at 3937.196 kb on - strand at 3937.196 kb on - strand at 3937.231 kb on + strand at 3937.238 kb on - strand at 3937.239 kb on - strand at 3937.239 kb on - strand at 3937.265 kb on + strand at 3937.289 kb on - strand, within CCNA_03769 at 3937.310 kb on - strand, within CCNA_03769 at 3937.314 kb on + strand, within CCNA_03769 at 3937.337 kb on - strand, within CCNA_03769 at 3937.337 kb on - strand, within CCNA_03769 at 3937.347 kb on + strand, within CCNA_03769 at 3937.354 kb on + strand, within CCNA_03769 at 3937.354 kb on + strand, within CCNA_03769 at 3937.362 kb on - strand, within CCNA_03769 at 3937.362 kb on - strand, within CCNA_03769 at 3937.362 kb on - strand, within CCNA_03769 at 3937.364 kb on + strand, within CCNA_03769 at 3937.382 kb on + strand, within CCNA_03769 at 3937.403 kb on + strand, within CCNA_03769 at 3937.403 kb on + strand, within CCNA_03769 at 3937.435 kb on - strand, within CCNA_03769 at 3937.436 kb on - strand, within CCNA_03769 at 3937.442 kb on - strand, within CCNA_03769 at 3937.449 kb on - strand, within CCNA_03769 at 3937.492 kb on - strand, within CCNA_03769 at 3937.514 kb on + strand, within CCNA_03769 at 3937.524 kb on + strand, within CCNA_03769 at 3937.529 kb on + strand, within CCNA_03769 at 3937.537 kb on + strand, within CCNA_03769 at 3937.545 kb on - strand, within CCNA_03769 at 3937.597 kb on + strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.617 kb on - strand, within CCNA_03769 at 3937.617 kb on - strand, within CCNA_03769 at 3937.642 kb on + strand, within CCNA_03769 at 3937.650 kb on - strand, within CCNA_03769 at 3937.650 kb on - strand, within CCNA_03769 at 3937.650 kb on - strand, within CCNA_03769 at 3937.660 kb on + strand, within CCNA_03769 at 3937.668 kb on - strand, within CCNA_03769 at 3937.668 kb on - strand, within CCNA_03769 at 3937.675 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.685 kb on - strand, within CCNA_03769 at 3937.685 kb on - strand, within CCNA_03769 at 3937.716 kb on + strand at 3937.730 kb on - strand at 3937.734 kb on + strand at 3937.742 kb on - strand at 3937.774 kb on + strand at 3937.775 kb on - strand at 3937.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 3,937,075 + +0.2 3,937,083 - +0.2 3,937,083 - -0.0 3,937,090 + -1.0 3,937,099 - -1.1 3,937,139 + +1.5 3,937,139 + +0.7 3,937,153 + +0.6 3,937,153 + +0.3 3,937,161 - +0.6 3,937,188 + -1.0 3,937,196 - +0.9 3,937,196 - +1.5 3,937,231 + -1.2 3,937,238 - +0.6 3,937,239 - +0.1 3,937,239 - +2.0 3,937,265 + +0.6 3,937,289 - CCNA_03769 0.11 +0.8 3,937,310 - CCNA_03769 0.15 +0.9 3,937,314 + CCNA_03769 0.16 -0.4 3,937,337 - CCNA_03769 0.21 -1.1 3,937,337 - CCNA_03769 0.21 +0.7 3,937,347 + CCNA_03769 0.22 +0.4 3,937,354 + CCNA_03769 0.24 -0.0 3,937,354 + CCNA_03769 0.24 -0.6 3,937,362 - CCNA_03769 0.25 -0.6 3,937,362 - CCNA_03769 0.25 +0.4 3,937,362 - CCNA_03769 0.25 +0.2 3,937,364 + CCNA_03769 0.26 +3.3 3,937,382 + CCNA_03769 0.29 +1.3 3,937,403 + CCNA_03769 0.34 -1.9 3,937,403 + CCNA_03769 0.34 -2.0 3,937,435 - CCNA_03769 0.40 -0.4 3,937,436 - CCNA_03769 0.40 +2.1 3,937,442 - CCNA_03769 0.41 +0.6 3,937,449 - CCNA_03769 0.43 +0.3 3,937,492 - CCNA_03769 0.51 -0.9 3,937,514 + CCNA_03769 0.55 +1.2 3,937,524 + CCNA_03769 0.57 -1.7 3,937,529 + CCNA_03769 0.58 +0.0 3,937,537 + CCNA_03769 0.60 -1.2 3,937,545 - CCNA_03769 0.62 +0.0 3,937,597 + CCNA_03769 0.72 -0.2 3,937,605 - CCNA_03769 0.73 +2.1 3,937,605 - CCNA_03769 0.73 +0.7 3,937,605 - CCNA_03769 0.73 +0.6 3,937,605 - CCNA_03769 0.73 -0.8 3,937,605 - CCNA_03769 0.73 -0.1 3,937,617 - CCNA_03769 0.76 -1.4 3,937,617 - CCNA_03769 0.76 +1.8 3,937,642 + CCNA_03769 0.81 -2.3 3,937,650 - CCNA_03769 0.82 -0.4 3,937,650 - CCNA_03769 0.82 +2.1 3,937,650 - CCNA_03769 0.82 +0.3 3,937,660 + CCNA_03769 0.84 -0.1 3,937,668 - CCNA_03769 0.86 -0.3 3,937,668 - CCNA_03769 0.86 -1.1 3,937,675 + CCNA_03769 0.87 -1.0 3,937,677 + CCNA_03769 0.88 +0.5 3,937,677 + CCNA_03769 0.88 -0.9 3,937,677 + CCNA_03769 0.88 -0.3 3,937,677 + CCNA_03769 0.88 +0.3 3,937,685 - CCNA_03769 0.89 -0.3 3,937,685 - CCNA_03769 0.89 +0.3 3,937,716 + -1.7 3,937,730 - -1.2 3,937,734 + -1.2 3,937,742 - +0.4 3,937,774 + +1.1 3,937,775 - +1.0 3,937,804 - +0.4
Or see this region's nucleotide sequence