Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03521

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,676,785	+				+2.2
3,676,793	-				+3.7
3,676,804	-				+3.2
3,676,806	+				+4.5
3,676,874	+		CCNA_03519	0.17	+4.9
3,676,923	+		CCNA_03519	0.32	+5.1
3,676,944	+		CCNA_03519	0.39	+2.9
3,676,957	+		CCNA_03519	0.43	+3.3
3,676,994	+		CCNA_03519	0.54	+4.0
3,677,005	+		CCNA_03519	0.57	+4.7
3,677,016	+		CCNA_03519	0.61	+3.7
3,677,040	+		CCNA_03519	0.68	+2.7
3,677,112	+				+3.4
3,677,120	-				-0.0
3,677,120	-				+0.7
3,677,146	-				-2.2
3,677,179	-				-0.3
3,677,212	+		CCNA_03520	0.13	-1.6
3,677,244	-		CCNA_03520	0.18	+1.3
3,677,244	-		CCNA_03520	0.18	+0.0
3,677,298	-		CCNA_03520	0.28	+0.5
3,677,334	+		CCNA_03520	0.34	-1.4
3,677,334	+		CCNA_03520	0.34	-1.1
3,677,342	-		CCNA_03520	0.36	-1.1
3,677,342	-		CCNA_03520	0.36	+0.2
3,677,365	+		CCNA_03520	0.40	-0.2
3,677,365	+		CCNA_03520	0.40	+0.2
3,677,373	-		CCNA_03520	0.41	-0.3
3,677,378	+		CCNA_03520	0.42	+2.2
3,677,398	-		CCNA_03520	0.46	+0.1
3,677,400	+		CCNA_03520	0.46	+2.7
3,677,408	-		CCNA_03520	0.47	-1.6
3,677,429	-		CCNA_03520	0.51	+0.7
3,677,437	+		CCNA_03520	0.52	-2.4
3,677,437	+		CCNA_03520	0.52	-0.1
3,677,437	+		CCNA_03520	0.52	-0.8
3,677,437	+		CCNA_03520	0.52	-0.3
3,677,437	+		CCNA_03520	0.52	-0.8
3,677,437	+		CCNA_03520	0.52	+1.8
3,677,437	+		CCNA_03520	0.52	-0.7
3,677,437	+		CCNA_03520	0.52	-0.3
3,677,445	-		CCNA_03520	0.54	-1.8
3,677,445	-		CCNA_03520	0.54	-0.7
3,677,445	-		CCNA_03520	0.54	+1.5
3,677,445	-		CCNA_03520	0.54	-1.5
3,677,445	-		CCNA_03520	0.54	+1.1
3,677,445	-		CCNA_03520	0.54	+0.5
3,677,445	-		CCNA_03520	0.54	+0.2
3,677,445	-		CCNA_03520	0.54	+0.2
3,677,470	+		CCNA_03520	0.58	-0.3
3,677,474	-		CCNA_03520	0.59	-0.6
3,677,504	+		CCNA_03520	0.64	+0.7
3,677,512	-		CCNA_03520	0.66	+0.4
3,677,552	+		CCNA_03520	0.73	+2.9
3,677,609	+		CCNA_03520	0.83	-0.1
3,677,617	-		CCNA_03520	0.84	-1.3
3,677,648	-				+0.2
3,677,675	-				-1.6
3,677,677	+				+1.4
3,677,677	+				-0.5
3,677,677	+				-0.7
3,677,695	-				+0.9
3,677,698	+				-0.5
3,677,705	+				+3.5
3,677,706	-				+0.4
3,677,706	-				-0.1
3,677,706	-				+1.0
3,677,713	-				-1.2
3,677,783	-				-0.5
3,677,807	+		CCNA_03521	0.13	-1.1
3,677,807	+		CCNA_03521	0.13	-0.7
3,677,807	+		CCNA_03521	0.13	-0.1
3,677,807	+		CCNA_03521	0.13	-0.3
3,677,807	+		CCNA_03521	0.13	-1.2
3,677,807	+		CCNA_03521	0.13	+1.1
3,677,815	-		CCNA_03521	0.14	-0.3
3,677,815	-		CCNA_03521	0.14	-0.3
3,677,815	-		CCNA_03521	0.14	+0.4
3,677,821	+		CCNA_03521	0.14	-1.5
3,677,826	+		CCNA_03521	0.15	-1.2
3,677,829	-		CCNA_03521	0.15	+0.1
3,677,880	+		CCNA_03521	0.21	-2.3
3,677,880	+		CCNA_03521	0.21	-1.5
3,677,889	+		CCNA_03521	0.22	-1.8
3,677,897	-		CCNA_03521	0.23	-2.4
3,677,952	+		CCNA_03521	0.30	-0.2
3,677,955	-		CCNA_03521	0.30	+0.2
3,677,960	-		CCNA_03521	0.31	+1.2
3,677,960	-		CCNA_03521	0.31	-1.2
3,677,960	-		CCNA_03521	0.31	+0.1
3,677,960	-		CCNA_03521	0.31	+0.3
3,677,960	-		CCNA_03521	0.31	-1.3
3,677,962	+		CCNA_03521	0.31	+0.6
3,678,026	+		CCNA_03521	0.39	+0.2
3,678,029	-		CCNA_03521	0.39	-0.7
3,678,029	-		CCNA_03521	0.39	-0.4
3,678,043	+		CCNA_03521	0.41	+0.7
3,678,048	+		CCNA_03521	0.41	-0.2
3,678,048	+		CCNA_03521	0.41	-0.8
3,678,048	+		CCNA_03521	0.41	-0.9
3,678,048	+		CCNA_03521	0.41	+0.5
3,678,048	+		CCNA_03521	0.41	-0.9
3,678,048	+		CCNA_03521	0.41	+1.8
3,678,051	-		CCNA_03521	0.42	+1.7
3,678,056	-		CCNA_03521	0.42	+0.3
3,678,056	-		CCNA_03521	0.42	-0.8
3,678,056	-		CCNA_03521	0.42	-1.0
3,678,056	-		CCNA_03521	0.42	-1.0
3,678,063	+		CCNA_03521	0.43	-0.9
3,678,099	+		CCNA_03521	0.48	-0.2
3,678,121	+		CCNA_03521	0.50	-0.3
3,678,143	+		CCNA_03521	0.53	-2.1
3,678,143	+		CCNA_03521	0.53	-0.6
3,678,143	+		CCNA_03521	0.53	+1.0
3,678,143	+		CCNA_03521	0.53	+0.0
3,678,150	+		CCNA_03521	0.54	-2.4
3,678,151	-		CCNA_03521	0.54	-0.2
3,678,158	+		CCNA_03521	0.55	-0.4
3,678,160	+		CCNA_03521	0.55	-0.0
3,678,160	+		CCNA_03521	0.55	+0.8
3,678,166	-		CCNA_03521	0.56	-0.2
3,678,169	+		CCNA_03521	0.56	-1.3
3,678,177	+		CCNA_03521	0.57	-0.9
3,678,206	+		CCNA_03521	0.60	-1.1
3,678,206	+		CCNA_03521	0.60	+1.1
3,678,206	+		CCNA_03521	0.60	+1.4
3,678,214	-		CCNA_03521	0.61	-1.8
3,678,214	-		CCNA_03521	0.61	+1.7
3,678,214	-		CCNA_03521	0.61	-0.9
3,678,245	+		CCNA_03521	0.65	-0.0
3,678,260	+		CCNA_03521	0.67	-0.2
3,678,267	-		CCNA_03521	0.68	-1.3
3,678,267	-		CCNA_03521	0.68	-1.3
3,678,267	-		CCNA_03521	0.68	+0.1
3,678,268	-		CCNA_03521	0.68	-1.7
3,678,303	+		CCNA_03521	0.72	+0.5
3,678,303	+		CCNA_03521	0.72	-0.2
3,678,303	+		CCNA_03521	0.72	-0.7
3,678,311	-		CCNA_03521	0.73	-0.5
3,678,352	+		CCNA_03521	0.78	+0.8
3,678,352	+		CCNA_03521	0.78	+0.1
3,678,360	-		CCNA_03521	0.79	-0.3
3,678,383	+		CCNA_03521	0.81	-0.9
3,678,423	-		CCNA_03521	0.86	+0.4
3,678,432	+		CCNA_03521	0.87	-1.0
3,678,432	+		CCNA_03521	0.87	-0.1
3,678,434	-		CCNA_03521	0.88	-2.1
3,678,463	+				+1.2
3,678,509	+				+1.7
3,678,527	-				+1.5
3,678,544	-				-2.6
3,678,562	+				+0.2
3,678,572	+				+0.8
3,678,572	+				+0.2
3,678,572	+				-0.6
3,678,578	+				+0.8
3,678,578	+				+2.5
3,678,580	-				-0.4
3,678,580	-				+0.1
3,678,580	-				+1.1
3,678,580	-				+0.9
3,678,586	-				-0.5
3,678,586	-				+0.7
3,678,598	-				+0.5
3,678,627	-				-0.8
3,678,636	+				+0.1
3,678,636	+				+0.8
3,678,650	+				-0.5
3,678,655	+				+0.6
3,678,678	-				-0.5
3,678,678	-				-0.2
3,678,678	-				-0.3
3,678,757	+				+1.0
3,678,762	-				+1.5
3,678,762	-				+1.7
3,678,776	-				+2.5
3,678,813	-				-0.7
3,678,818	-				+0.1
3,678,822	+				+3.1
3,678,822	+				-0.3
3,678,822	+				+1.7
3,678,830	-				+1.0
3,678,830	-				+0.6
3,678,863	+				+2.1
3,678,884	-		CCNA_03522	0.10	-0.7
3,678,884	-		CCNA_03522	0.10	-2.1
3,678,897	+		CCNA_03522	0.11	+0.9
3,678,899	+		CCNA_03522	0.11	+1.9
3,678,899	+		CCNA_03522	0.11	+1.9
3,678,899	+		CCNA_03522	0.11	+1.9
3,678,899	+		CCNA_03522	0.11	+1.8
3,678,899	+		CCNA_03522	0.11	+1.5
3,678,899	+		CCNA_03522	0.11	+1.5
3,678,899	+		CCNA_03522	0.11	+1.8
3,678,913	+		CCNA_03522	0.12	+0.7
3,678,924	+		CCNA_03522	0.13	+0.6
3,678,931	+		CCNA_03522	0.14	+0.7
3,678,931	+		CCNA_03522	0.14	+1.5
3,678,931	+		CCNA_03522	0.14	+1.6
3,678,931	+		CCNA_03522	0.14	+1.0
3,678,931	+		CCNA_03522	0.14	+1.1
3,678,931	+		CCNA_03522	0.14	+0.4
3,678,939	-		CCNA_03522	0.14	+1.7
3,678,939	-		CCNA_03522	0.14	+0.8
3,678,939	-		CCNA_03522	0.14	+1.1
3,678,939	-		CCNA_03522	0.14	+2.0
3,678,939	-		CCNA_03522	0.14	+1.3
3,678,939	-		CCNA_03522	0.14	-0.0
3,678,939	-		CCNA_03522	0.14	-0.4
3,678,939	-		CCNA_03522	0.14	-0.2
3,679,031	+		CCNA_03522	0.21	+2.0
3,679,081	+		CCNA_03522	0.24	+1.3
3,679,082	+		CCNA_03522	0.24	+1.1
3,679,117	-		CCNA_03522	0.27	-0.2
3,679,145	+		CCNA_03522	0.29	+1.8
3,679,199	-		CCNA_03522	0.32	+0.7
3,679,230	+		CCNA_03522	0.34	+1.7
3,679,293	+		CCNA_03522	0.39	+1.4
3,679,301	-		CCNA_03522	0.39	-1.7
3,679,415	+		CCNA_03522	0.47	+2.9
3,679,493	-		CCNA_03522	0.53	+0.2
3,679,513	-		CCNA_03522	0.54	-1.2
3,679,513	-		CCNA_03522	0.54	+1.2
3,679,527	-		CCNA_03522	0.55	-0.3