Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02308

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
2,452,574	+		CCNA_02307	0.17	+0.5
2,452,575	-		CCNA_02307	0.17	-0.8
2,452,620	+		CCNA_02307	0.22	+1.7
2,452,651	-		CCNA_02307	0.25	+0.2
2,452,658	+		CCNA_02307	0.26	+2.9
2,452,708	-		CCNA_02307	0.32	+0.0
2,452,726	+		CCNA_02307	0.33	+1.3
2,452,795	+		CCNA_02307	0.41	+0.9
2,452,805	+		CCNA_02307	0.42	+0.2
2,452,859	+		CCNA_02307	0.48	+3.0
2,452,907	+		CCNA_02307	0.53	+0.5
2,452,946	-		CCNA_02307	0.57	+1.6
2,452,967	+		CCNA_02307	0.59	-1.3
2,453,009	-		CCNA_02307	0.64	+1.3
2,453,032	-		CCNA_02307	0.66	-2.0
2,453,069	+		CCNA_02307	0.70	+0.8
2,453,092	-		CCNA_02307	0.72	-0.2
2,453,168	+		CCNA_02307	0.81	+0.3
2,453,176	-		CCNA_02307	0.81	-0.8
2,453,176	-		CCNA_02307	0.81	+1.6
2,453,176	-		CCNA_02307	0.81	+0.8
2,453,176	-		CCNA_02307	0.81	-1.1
2,453,176	-		CCNA_02307	0.81	+0.3
2,453,214	-		CCNA_02307	0.85	-0.9
2,453,255	+		CCNA_02307	0.90	+1.9
2,453,255	+		CCNA_02307	0.90	+1.7
2,453,300	+				+2.2
2,453,300	+				+1.3
2,453,300	+				+0.9
2,453,300	+				+2.5
2,453,300	+				+1.8
2,453,300	+				+2.0
2,453,300	+				+1.5
2,453,308	-				+2.0
2,453,308	-				-0.6
2,453,344	+				+2.2
2,453,344	+				+1.8
2,453,344	+				+1.4
2,453,345	+				+0.6
2,453,345	+				+1.0
2,453,345	+				-0.1
2,453,352	-				-3.0
2,453,433	-				+1.1
2,453,467	-				+1.4
2,453,506	+				+1.2
2,453,519	-				-0.9
2,453,534	-				+0.3
2,453,545	-				-0.7
2,453,596	+		CCNA_02308	0.14	-0.2
2,453,596	+		CCNA_02308	0.14	-0.6
2,453,648	-		CCNA_02308	0.20	-2.1
2,453,651	+		CCNA_02308	0.20	-1.6
2,453,659	-		CCNA_02308	0.21	-2.8
2,453,703	-		CCNA_02308	0.26	-0.9
2,453,714	-		CCNA_02308	0.28	-0.2
2,453,716	+		CCNA_02308	0.28	-0.2
2,453,724	-		CCNA_02308	0.29	-0.7
2,453,743	+		CCNA_02308	0.31	+1.1
2,453,771	+		CCNA_02308	0.34	-1.1
2,453,809	+		CCNA_02308	0.39	-0.0
2,453,817	-		CCNA_02308	0.40	-1.2
2,453,834	-		CCNA_02308	0.42	+1.0
2,453,854	+		CCNA_02308	0.44	+0.7
2,453,861	+		CCNA_02308	0.45	+1.3
2,453,869	-		CCNA_02308	0.46	+0.6
2,453,879	-		CCNA_02308	0.47	-2.2
2,453,892	-		CCNA_02308	0.49	-1.1
2,453,964	-		CCNA_02308	0.57	+0.7
2,453,964	-		CCNA_02308	0.57	+0.6
2,453,968	+		CCNA_02308	0.57	-0.8
2,453,968	+		CCNA_02308	0.57	-0.8
2,454,003	-		CCNA_02308	0.62	-1.1
2,454,016	+		CCNA_02308	0.63	-0.7
2,454,118	+		CCNA_02308	0.75	-1.1
2,454,119	-		CCNA_02308	0.75	+0.4
2,454,148	-		CCNA_02308	0.78	-0.3
2,454,161	-		CCNA_02308	0.80	-0.9
2,454,166	+		CCNA_02308	0.81	+2.3
2,454,173	+		CCNA_02308	0.81	+0.3
2,454,181	-		CCNA_02308	0.82	-1.3
2,454,181	-		CCNA_02308	0.82	+1.1
2,454,222	+		CCNA_02308	0.87	-1.0
2,454,230	-		CCNA_02308	0.88	-2.3
2,454,230	-		CCNA_02308	0.88	-0.6
2,454,230	-		CCNA_02308	0.88	+0.4
2,454,230	-		CCNA_02308	0.88	-1.2
2,454,239	+		CCNA_02308	0.89	+0.7
2,454,254	+				+0.6
2,454,299	+				+1.4
2,454,339	+				+0.9
2,454,347	-				-1.3
2,454,352	-				+1.0
2,454,392	+				+2.3
2,454,499	-				-0.4
2,454,696	+		CCNA_02309	0.53	+0.9
2,454,766	-		CCNA_02309	0.74	-0.8
2,454,800	+		CCNA_02309	0.84	+1.7
2,454,802	+		CCNA_02309	0.84	+2.1
2,454,809	-		CCNA_02309	0.86	-0.6
2,454,813	+		CCNA_02309	0.88	+1.7
2,454,848	+				+1.5
2,454,848	+				+1.2
2,454,848	+				+1.3
2,454,848	+				+1.9
2,454,850	+				+1.3
2,454,856	-				-0.8
2,454,856	-				-1.1
2,454,856	-				-1.3
2,454,870	+				+1.0
2,454,870	+				-0.2
2,454,878	-				-0.5
2,454,878	-				-0.3
2,454,878	-				+0.3
2,454,982	+				-2.4
2,454,990	-				+1.6
2,455,039	+				+0.6
2,455,050	+				+0.7
2,455,077	+				-1.9
2,455,085	-				-1.7
2,455,124	+				-1.0
2,455,126	-				-2.5
2,455,150	-				-0.5
2,455,176	+				+2.1
2,455,181	+				-1.8
2,455,189	-				-1.1
2,455,189	-				+1.0
2,455,189	-				-1.1
2,455,191	+				+2.9
2,455,217	+		CCNA_02310	0.11	+0.3
2,455,217	+		CCNA_02310	0.11	+0.6
2,455,223	+		CCNA_02310	0.11	+0.2
2,455,224	+		CCNA_02310	0.12	-1.4
2,455,231	-		CCNA_02310	0.12	+0.2
2,455,232	-		CCNA_02310	0.12	-0.6
2,455,295	+		CCNA_02310	0.15	-1.5