Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01689

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01688 and CCNA_01689 are separated by 92 nucleotidesCCNA_01689 and CCNA_01690 are separated by 3 nucleotidesCCNA_01690 and CCNA_01691 overlap by 1 nucleotides CCNA_01688: CCNA_01688 - potassium channel protein, at 1,814,816 to 1,815,859 _01688 CCNA_01689: CCNA_01689 - inosine-5'-monophosphate dehydrogenase, at 1,815,952 to 1,817,415 _01689 CCNA_01690: CCNA_01690 - MAPEG family membrane protein, at 1,817,419 to 1,817,814 _01690 CCNA_01691: CCNA_01691 - tRNA/rRNA methyltransferase, at 1,817,814 to 1,819,091 _01691 Position (kb) 1815 1816 1817 1818Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1814.965 kb on + strand, within CCNA_01688at 1814.967 kb on - strand, within CCNA_01688at 1814.972 kb on - strand, within CCNA_01688at 1814.994 kb on + strand, within CCNA_01688at 1814.997 kb on - strand, within CCNA_01688at 1815.053 kb on + strand, within CCNA_01688at 1815.063 kb on - strand, within CCNA_01688at 1815.094 kb on + strand, within CCNA_01688at 1815.102 kb on - strand, within CCNA_01688at 1815.102 kb on - strand, within CCNA_01688at 1815.131 kb on + strand, within CCNA_01688at 1815.154 kb on - strand, within CCNA_01688at 1815.171 kb on + strand, within CCNA_01688at 1815.171 kb on + strand, within CCNA_01688at 1815.176 kb on + strand, within CCNA_01688at 1815.198 kb on + strand, within CCNA_01688at 1815.211 kb on - strand, within CCNA_01688at 1815.241 kb on + strand, within CCNA_01688at 1815.313 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.368 kb on + strand, within CCNA_01688at 1815.368 kb on + strand, within CCNA_01688at 1815.381 kb on - strand, within CCNA_01688at 1815.385 kb on + strand, within CCNA_01688at 1815.393 kb on - strand, within CCNA_01688at 1815.406 kb on - strand, within CCNA_01688at 1815.437 kb on - strand, within CCNA_01688at 1815.443 kb on + strand, within CCNA_01688at 1815.469 kb on + strand, within CCNA_01688at 1815.469 kb on + strand, within CCNA_01688at 1815.477 kb on - strand, within CCNA_01688at 1815.529 kb on + strand, within CCNA_01688at 1815.532 kb on - strand, within CCNA_01688at 1815.558 kb on + strand, within CCNA_01688at 1815.568 kb on - strand, within CCNA_01688at 1815.590 kb on - strand, within CCNA_01688at 1815.614 kb on - strand, within CCNA_01688at 1815.638 kb on + strand, within CCNA_01688at 1815.639 kb on + strand, within CCNA_01688at 1815.653 kb on - strand, within CCNA_01688at 1815.670 kb on + strand, within CCNA_01688at 1815.696 kb on - strand, within CCNA_01688at 1815.710 kb on - strand, within CCNA_01688at 1815.712 kb on + strand, within CCNA_01688at 1815.712 kb on + strand, within CCNA_01688at 1815.717 kb on + strand, within CCNA_01688at 1815.717 kb on + strand, within CCNA_01688at 1815.730 kb on - strand, within CCNA_01688at 1815.753 kb on - strand, within CCNA_01688at 1815.757 kb on - strandat 1815.769 kb on + strandat 1815.769 kb on + strandat 1815.769 kb on + strandat 1815.777 kb on - strandat 1815.824 kb on - strandat 1815.839 kb on - strandat 1817.399 kb on + strandat 1817.515 kb on + strand, within CCNA_01690at 1817.549 kb on + strand, within CCNA_01690at 1817.549 kb on + strand, within CCNA_01690at 1817.634 kb on - strand, within CCNA_01690at 1817.674 kb on - strand, within CCNA_01690at 1817.722 kb on - strand, within CCNA_01690at 1817.734 kb on + strand, within CCNA_01690at 1817.757 kb on + strand, within CCNA_01690at 1817.757 kb on + strand, within CCNA_01690at 1817.787 kb on + strandat 1817.914 kb on - strandat 1817.914 kb on - strandat 1817.995 kb on + strand, within CCNA_01691at 1818.166 kb on + strand, within CCNA_01691at 1818.229 kb on - strand, within CCNA_01691at 1818.327 kb on + strand, within CCNA_01691at 1818.335 kb on - strand, within CCNA_01691at 1818.346 kb on - strand, within CCNA_01691at 1818.348 kb on + strand, within CCNA_01691

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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1,814,965 + CCNA_01688 0.14 +1.1
1,814,967 - CCNA_01688 0.14 +0.7
1,814,972 - CCNA_01688 0.15 +0.5
1,814,994 + CCNA_01688 0.17 +0.8
1,814,997 - CCNA_01688 0.17 -0.1
1,815,053 + CCNA_01688 0.23 -0.1
1,815,063 - CCNA_01688 0.24 +1.5
1,815,094 + CCNA_01688 0.27 -0.5
1,815,102 - CCNA_01688 0.27 +0.8
1,815,102 - CCNA_01688 0.27 +1.1
1,815,131 + CCNA_01688 0.30 -0.3
1,815,154 - CCNA_01688 0.32 +0.8
1,815,171 + CCNA_01688 0.34 +0.0
1,815,171 + CCNA_01688 0.34 +0.3
1,815,176 + CCNA_01688 0.34 -0.7
1,815,198 + CCNA_01688 0.37 +0.6
1,815,211 - CCNA_01688 0.38 -0.3
1,815,241 + CCNA_01688 0.41 +0.1
1,815,313 + CCNA_01688 0.48 -1.0
1,815,361 + CCNA_01688 0.52 -0.8
1,815,361 + CCNA_01688 0.52 -0.3
1,815,361 + CCNA_01688 0.52 +2.6
1,815,361 + CCNA_01688 0.52 -0.6
1,815,361 + CCNA_01688 0.52 +0.0
1,815,368 + CCNA_01688 0.53 +0.1
1,815,368 + CCNA_01688 0.53 +1.3
1,815,381 - CCNA_01688 0.54 -0.1
1,815,385 + CCNA_01688 0.55 +0.7
1,815,393 - CCNA_01688 0.55 +2.3
1,815,406 - CCNA_01688 0.57 -0.6
1,815,437 - CCNA_01688 0.59 +0.4
1,815,443 + CCNA_01688 0.60 -2.4
1,815,469 + CCNA_01688 0.63 +0.7
1,815,469 + CCNA_01688 0.63 +2.8
1,815,477 - CCNA_01688 0.63 +0.6
1,815,529 + CCNA_01688 0.68 -0.5
1,815,532 - CCNA_01688 0.69 -0.8
1,815,558 + CCNA_01688 0.71 -0.7
1,815,568 - CCNA_01688 0.72 +0.3
1,815,590 - CCNA_01688 0.74 -0.9
1,815,614 - CCNA_01688 0.76 +1.9
1,815,638 + CCNA_01688 0.79 +1.0
1,815,639 + CCNA_01688 0.79 -0.5
1,815,653 - CCNA_01688 0.80 +0.1
1,815,670 + CCNA_01688 0.82 -1.6
1,815,696 - CCNA_01688 0.84 -0.6
1,815,710 - CCNA_01688 0.86 +0.9
1,815,712 + CCNA_01688 0.86 +0.4
1,815,712 + CCNA_01688 0.86 +0.6
1,815,717 + CCNA_01688 0.86 +0.7
1,815,717 + CCNA_01688 0.86 -0.6
1,815,730 - CCNA_01688 0.88 -1.2
1,815,753 - CCNA_01688 0.90 -0.3
1,815,757 - +2.2
1,815,769 + +0.6
1,815,769 + +0.5
1,815,769 + -0.9
1,815,777 - +0.4
1,815,824 - -0.4
1,815,839 - +0.4
1,817,399 + +2.4
1,817,515 + CCNA_01690 0.24 +1.9
1,817,549 + CCNA_01690 0.33 +2.6
1,817,549 + CCNA_01690 0.33 +2.2
1,817,634 - CCNA_01690 0.54 +1.2
1,817,674 - CCNA_01690 0.64 +1.1
1,817,722 - CCNA_01690 0.77 +0.7
1,817,734 + CCNA_01690 0.80 +2.7
1,817,757 + CCNA_01690 0.85 +2.1
1,817,757 + CCNA_01690 0.85 +1.4
1,817,787 + +2.7
1,817,914 - +0.7
1,817,914 - +0.5
1,817,995 + CCNA_01691 0.14 +0.5
1,818,166 + CCNA_01691 0.28 +1.7
1,818,229 - CCNA_01691 0.32 +1.7
1,818,327 + CCNA_01691 0.40 +1.6
1,818,335 - CCNA_01691 0.41 -0.1
1,818,346 - CCNA_01691 0.42 +0.3
1,818,348 + CCNA_01691 0.42 +1.2

Or see this region's nucleotide sequence