Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01644 and CCNA_01645 are separated by 114 nucleotides CCNA_01645 and CCNA_01646 overlap by 4 nucleotides CCNA_01646 and CCNA_01647 overlap by 4 nucleotides
CCNA_01644: CCNA_01644 - chemotaxis motB protein, at 1,764,656 to 1,765,552
_01644
CCNA_01645: CCNA_01645 - 3-hydroxyisobutyrate dehydrogenase, at 1,765,667 to 1,766,527
_01645
CCNA_01646: CCNA_01646 - dethiobiotin synthetase, at 1,766,524 to 1,767,183
_01646
CCNA_01647: CCNA_01647 - 8-amino-7-oxononanoate synthase, at 1,767,180 to 1,768,334
_01647
Position (kb)
1766
1767
1768 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1765.546 kb on + strand at 1765.566 kb on + strand at 1765.589 kb on + strand at 1765.597 kb on - strand at 1765.638 kb on + strand at 1765.701 kb on + strand at 1765.720 kb on + strand at 1765.720 kb on + strand at 1765.720 kb on + strand at 1765.728 kb on - strand at 1765.733 kb on + strand at 1765.761 kb on + strand, within CCNA_01645 at 1765.772 kb on + strand, within CCNA_01645 at 1765.819 kb on + strand, within CCNA_01645 at 1766.002 kb on - strand, within CCNA_01645 at 1766.015 kb on + strand, within CCNA_01645 at 1766.040 kb on - strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.201 kb on + strand, within CCNA_01645 at 1766.209 kb on - strand, within CCNA_01645 at 1766.209 kb on - strand, within CCNA_01645 at 1766.224 kb on + strand, within CCNA_01645 at 1766.245 kb on + strand, within CCNA_01645 at 1766.253 kb on - strand, within CCNA_01645 at 1766.288 kb on + strand, within CCNA_01645 at 1766.296 kb on - strand, within CCNA_01645 at 1766.311 kb on - strand, within CCNA_01645 at 1766.327 kb on + strand, within CCNA_01645 at 1766.375 kb on + strand, within CCNA_01645 at 1766.376 kb on - strand, within CCNA_01645 at 1766.387 kb on + strand, within CCNA_01645 at 1766.387 kb on + strand, within CCNA_01645 at 1766.387 kb on + strand, within CCNA_01645 at 1766.388 kb on + strand, within CCNA_01645 at 1766.395 kb on - strand, within CCNA_01645 at 1766.432 kb on + strand, within CCNA_01645 at 1766.440 kb on - strand, within CCNA_01645 at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.458 kb on + strand at 1766.464 kb on + strand at 1766.467 kb on - strand at 1766.472 kb on - strand at 1766.490 kb on + strand at 1766.490 kb on + strand at 1766.490 kb on + strand at 1766.498 kb on - strand at 1766.498 kb on - strand at 1766.504 kb on - strand at 1766.528 kb on + strand at 1766.536 kb on - strand at 1766.536 kb on - strand at 1766.536 kb on - strand at 1766.570 kb on - strand at 1766.617 kb on - strand, within CCNA_01646 at 1766.619 kb on + strand, within CCNA_01646 at 1766.619 kb on + strand, within CCNA_01646 at 1766.626 kb on + strand, within CCNA_01646 at 1766.627 kb on - strand, within CCNA_01646 at 1766.652 kb on + strand, within CCNA_01646 at 1766.654 kb on - strand, within CCNA_01646 at 1766.675 kb on + strand, within CCNA_01646 at 1766.685 kb on + strand, within CCNA_01646 at 1766.685 kb on + strand, within CCNA_01646 at 1766.688 kb on - strand, within CCNA_01646 at 1766.704 kb on - strand, within CCNA_01646 at 1766.710 kb on - strand, within CCNA_01646 at 1766.719 kb on - strand, within CCNA_01646 at 1766.732 kb on - strand, within CCNA_01646 at 1766.744 kb on - strand, within CCNA_01646 at 1766.769 kb on + strand, within CCNA_01646 at 1766.769 kb on + strand, within CCNA_01646 at 1766.777 kb on - strand, within CCNA_01646 at 1766.780 kb on + strand, within CCNA_01646 at 1766.788 kb on - strand, within CCNA_01646 at 1766.795 kb on - strand, within CCNA_01646 at 1766.796 kb on - strand, within CCNA_01646 at 1766.850 kb on - strand, within CCNA_01646 at 1766.853 kb on + strand, within CCNA_01646 at 1766.896 kb on - strand, within CCNA_01646 at 1766.903 kb on + strand, within CCNA_01646 at 1766.905 kb on + strand, within CCNA_01646 at 1766.921 kb on + strand, within CCNA_01646 at 1766.936 kb on + strand, within CCNA_01646 at 1767.036 kb on + strand, within CCNA_01646 at 1767.036 kb on + strand, within CCNA_01646 at 1767.036 kb on + strand, within CCNA_01646 at 1767.044 kb on - strand, within CCNA_01646 at 1767.051 kb on + strand, within CCNA_01646 at 1767.072 kb on - strand, within CCNA_01646 at 1767.110 kb on + strand, within CCNA_01646 at 1767.118 kb on - strand at 1767.120 kb on - strand at 1767.194 kb on + strand at 1767.282 kb on + strand at 1767.290 kb on - strand at 1767.290 kb on - strand at 1767.290 kb on - strand at 1767.377 kb on - strand, within CCNA_01647 at 1767.410 kb on + strand, within CCNA_01647 at 1767.418 kb on - strand, within CCNA_01647 at 1767.418 kb on - strand, within CCNA_01647 at 1767.418 kb on - strand, within CCNA_01647 at 1767.436 kb on + strand, within CCNA_01647 at 1767.519 kb on + strand, within CCNA_01647 at 1767.521 kb on - strand, within CCNA_01647 at 1767.521 kb on - strand, within CCNA_01647 at 1767.586 kb on - strand, within CCNA_01647 at 1767.617 kb on - strand, within CCNA_01647 at 1767.663 kb on - strand, within CCNA_01647 at 1767.663 kb on - strand, within CCNA_01647 at 1767.682 kb on - strand, within CCNA_01647 at 1767.909 kb on - strand, within CCNA_01647 at 1767.936 kb on + strand, within CCNA_01647 at 1767.943 kb on - strand, within CCNA_01647 at 1767.977 kb on + strand, within CCNA_01647 at 1768.007 kb on + strand, within CCNA_01647 at 1768.047 kb on - strand, within CCNA_01647 at 1768.128 kb on + strand, within CCNA_01647 at 1768.136 kb on - strand, within CCNA_01647 at 1768.153 kb on + strand, within CCNA_01647 at 1768.178 kb on + strand, within CCNA_01647
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 1,765,546 + +4.1 1,765,566 + -1.7 1,765,589 + +1.1 1,765,597 - +0.6 1,765,638 + +0.9 1,765,701 + +0.6 1,765,720 + -1.6 1,765,720 + -0.3 1,765,720 + +1.6 1,765,728 - -0.3 1,765,733 + +0.1 1,765,761 + CCNA_01645 0.11 +2.3 1,765,772 + CCNA_01645 0.12 -0.2 1,765,819 + CCNA_01645 0.18 -1.1 1,766,002 - CCNA_01645 0.39 +0.5 1,766,015 + CCNA_01645 0.40 +0.0 1,766,040 - CCNA_01645 0.43 -1.8 1,766,119 + CCNA_01645 0.52 +0.5 1,766,119 + CCNA_01645 0.52 -0.6 1,766,119 + CCNA_01645 0.52 +3.8 1,766,119 + CCNA_01645 0.52 +1.4 1,766,119 + CCNA_01645 0.52 -0.4 1,766,119 + CCNA_01645 0.52 +1.5 1,766,119 + CCNA_01645 0.52 +0.3 1,766,119 + CCNA_01645 0.52 -0.6 1,766,127 - CCNA_01645 0.53 +0.4 1,766,127 - CCNA_01645 0.53 +2.5 1,766,127 - CCNA_01645 0.53 -0.5 1,766,127 - CCNA_01645 0.53 +1.5 1,766,201 + CCNA_01645 0.62 +1.5 1,766,209 - CCNA_01645 0.63 +0.5 1,766,209 - CCNA_01645 0.63 +0.1 1,766,224 + CCNA_01645 0.65 -1.3 1,766,245 + CCNA_01645 0.67 -1.1 1,766,253 - CCNA_01645 0.68 -0.9 1,766,288 + CCNA_01645 0.72 +0.6 1,766,296 - CCNA_01645 0.73 -0.6 1,766,311 - CCNA_01645 0.75 -1.7 1,766,327 + CCNA_01645 0.77 -1.0 1,766,375 + CCNA_01645 0.82 -0.1 1,766,376 - CCNA_01645 0.82 -0.1 1,766,387 + CCNA_01645 0.84 -0.8 1,766,387 + CCNA_01645 0.84 +1.2 1,766,387 + CCNA_01645 0.84 +0.0 1,766,388 + CCNA_01645 0.84 +0.5 1,766,395 - CCNA_01645 0.85 +0.7 1,766,432 + CCNA_01645 0.89 -0.0 1,766,440 - CCNA_01645 0.90 -0.9 1,766,446 + +0.0 1,766,446 + -0.5 1,766,446 + +1.4 1,766,446 + +1.0 1,766,446 + +0.5 1,766,446 + +1.8 1,766,446 + +1.1 1,766,446 + +0.6 1,766,446 + +0.5 1,766,446 + +0.8 1,766,454 - +0.1 1,766,454 - +1.6 1,766,454 - +0.3 1,766,454 - -0.9 1,766,454 - +1.7 1,766,454 - -0.8 1,766,454 - +1.9 1,766,454 - +1.5 1,766,454 - +1.4 1,766,454 - +0.9 1,766,454 - -0.1 1,766,454 - +1.1 1,766,458 + +2.0 1,766,464 + -2.1 1,766,467 - -0.2 1,766,472 - +0.5 1,766,490 + +0.2 1,766,490 + +0.6 1,766,490 + +0.3 1,766,498 - +0.6 1,766,498 - +1.9 1,766,504 - -0.1 1,766,528 + -0.1 1,766,536 - -0.6 1,766,536 - -0.5 1,766,536 - +0.0 1,766,570 - +0.3 1,766,617 - CCNA_01646 0.14 -0.9 1,766,619 + CCNA_01646 0.14 +0.4 1,766,619 + CCNA_01646 0.14 +1.3 1,766,626 + CCNA_01646 0.15 -0.4 1,766,627 - CCNA_01646 0.16 -0.6 1,766,652 + CCNA_01646 0.19 +0.7 1,766,654 - CCNA_01646 0.20 +1.2 1,766,675 + CCNA_01646 0.23 -0.4 1,766,685 + CCNA_01646 0.24 +3.3 1,766,685 + CCNA_01646 0.24 +0.6 1,766,688 - CCNA_01646 0.25 +2.8 1,766,704 - CCNA_01646 0.27 +3.3 1,766,710 - CCNA_01646 0.28 -0.5 1,766,719 - CCNA_01646 0.30 +2.3 1,766,732 - CCNA_01646 0.32 -2.1 1,766,744 - CCNA_01646 0.33 -0.8 1,766,769 + CCNA_01646 0.37 -0.7 1,766,769 + CCNA_01646 0.37 +0.8 1,766,777 - CCNA_01646 0.38 -1.7 1,766,780 + CCNA_01646 0.39 +0.8 1,766,788 - CCNA_01646 0.40 +1.2 1,766,795 - CCNA_01646 0.41 +0.4 1,766,796 - CCNA_01646 0.41 +0.1 1,766,850 - CCNA_01646 0.49 -0.5 1,766,853 + CCNA_01646 0.50 +0.0 1,766,896 - CCNA_01646 0.56 +0.7 1,766,903 + CCNA_01646 0.57 +0.2 1,766,905 + CCNA_01646 0.58 -2.2 1,766,921 + CCNA_01646 0.60 +1.9 1,766,936 + CCNA_01646 0.62 +2.7 1,767,036 + CCNA_01646 0.78 +3.5 1,767,036 + CCNA_01646 0.78 -0.1 1,767,036 + CCNA_01646 0.78 -0.3 1,767,044 - CCNA_01646 0.79 +0.5 1,767,051 + CCNA_01646 0.80 -0.9 1,767,072 - CCNA_01646 0.83 +2.6 1,767,110 + CCNA_01646 0.89 -1.7 1,767,118 - -1.4 1,767,120 - +1.5 1,767,194 + -0.3 1,767,282 + -1.0 1,767,290 - -1.9 1,767,290 - -0.5 1,767,290 - +0.9 1,767,377 - CCNA_01647 0.17 -0.9 1,767,410 + CCNA_01647 0.20 +1.7 1,767,418 - CCNA_01647 0.21 +2.1 1,767,418 - CCNA_01647 0.21 -2.3 1,767,418 - CCNA_01647 0.21 +0.5 1,767,436 + CCNA_01647 0.22 -0.4 1,767,519 + CCNA_01647 0.29 -0.1 1,767,521 - CCNA_01647 0.30 -0.1 1,767,521 - CCNA_01647 0.30 +1.2 1,767,586 - CCNA_01647 0.35 +1.0 1,767,617 - CCNA_01647 0.38 -0.4 1,767,663 - CCNA_01647 0.42 -0.4 1,767,663 - CCNA_01647 0.42 -0.2 1,767,682 - CCNA_01647 0.43 +1.9 1,767,909 - CCNA_01647 0.63 +0.1 1,767,936 + CCNA_01647 0.65 +0.3 1,767,943 - CCNA_01647 0.66 -0.2 1,767,977 + CCNA_01647 0.69 -0.4 1,768,007 + CCNA_01647 0.72 -1.8 1,768,047 - CCNA_01647 0.75 -1.2 1,768,128 + CCNA_01647 0.82 +0.9 1,768,136 - CCNA_01647 0.83 -0.3 1,768,153 + CCNA_01647 0.84 -1.4 1,768,178 + CCNA_01647 0.86 -1.7
Or see this region's nucleotide sequence