Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01541

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,649,282	+		CCNA_03952	0.54	+2.3
1,649,282	+		CCNA_03952	0.54	+1.2
1,649,282	+		CCNA_03952	0.54	+2.0
1,649,290	-		CCNA_03952	0.56	-1.8
1,649,290	-		CCNA_03952	0.56	-1.8
1,649,301	-		CCNA_03952	0.58	+0.6
1,649,398	-		CCNA_03952	0.78	+1.9
1,649,455	+		CCNA_03952	0.90	-0.9
1,649,455	+		CCNA_03952	0.90	+0.9
1,649,463	-				+0.8
1,649,463	-				+0.0
1,649,504	-				+1.0
1,649,507	-				+1.0
1,649,517	-				+0.3
1,649,622	-		CCNA_01539	0.23	+1.7
1,649,627	-		CCNA_01539	0.24	+0.3
1,649,644	+		CCNA_01539	0.27	-1.1
1,649,680	+		CCNA_01539	0.32	+0.5
1,649,731	-		CCNA_01539	0.39	+1.2
1,649,747	+		CCNA_01539	0.41	-1.3
1,649,747	+		CCNA_01539	0.41	-0.5
1,649,747	+		CCNA_01539	0.41	+0.0
1,649,755	-		CCNA_01539	0.42	+0.7
1,649,767	-		CCNA_01539	0.44	-1.7
1,649,801	-		CCNA_01539	0.49	-0.0
1,649,804	+		CCNA_01539	0.49	-0.2
1,649,812	-		CCNA_01539	0.51	-0.7
1,649,840	+		CCNA_01539	0.55	+1.0
1,649,850	-		CCNA_01539	0.56	-0.0
1,649,870	-		CCNA_01539	0.59	+0.6
1,649,871	-		CCNA_01539	0.59	-1.0
1,649,881	+		CCNA_01539	0.61	-0.3
1,649,882	+		CCNA_01539	0.61	-0.5
1,649,916	+		CCNA_01539	0.66	+0.3
1,649,924	-		CCNA_01539	0.67	+0.9
1,649,955	+		CCNA_01539	0.71	-0.1
1,649,975	-		CCNA_01539	0.74	-1.9
1,650,026	+		CCNA_01539	0.81	-0.6
1,650,106	-				-0.2
1,650,166	+				+0.2
1,650,282	-				-1.5
1,650,346	-				+0.5
1,650,363	+				+1.6
1,650,371	-				-0.3
1,650,371	-				-0.7
1,650,374	+		CCNA_01541	0.10	+1.6
1,650,382	+		CCNA_01541	0.11	+2.4
1,650,389	+		CCNA_01541	0.12	+2.0
1,650,411	+		CCNA_01541	0.14	+2.6
1,650,424	+		CCNA_01541	0.16	+2.1
1,650,424	+		CCNA_01541	0.16	+2.1
1,650,442	-		CCNA_01541	0.18	+0.8
1,650,454	+		CCNA_01541	0.19	+2.0
1,650,459	+		CCNA_01541	0.20	+2.1
1,650,459	+		CCNA_01541	0.20	+2.0
1,650,459	+		CCNA_01541	0.20	+2.7
1,650,462	-		CCNA_01541	0.20	+1.7
1,650,462	-		CCNA_01541	0.20	+0.0
1,650,464	+		CCNA_01541	0.20	+2.3
1,650,485	+		CCNA_01541	0.23	+2.4
1,650,507	-		CCNA_01541	0.25	-0.3
1,650,530	+		CCNA_01541	0.28	+2.0
1,650,538	+		CCNA_01541	0.29	+2.5
1,650,548	+		CCNA_01541	0.30	+2.1
1,650,580	-		CCNA_01541	0.33	-1.5
1,650,643	+		CCNA_01541	0.40	+2.4
1,650,651	-		CCNA_01541	0.41	-1.3
1,650,655	+		CCNA_01541	0.42	+3.2
1,650,660	+		CCNA_01541	0.42	+2.7
1,650,690	-		CCNA_01541	0.45	+0.1
1,650,724	+		CCNA_01541	0.49	+1.4
1,650,731	-		CCNA_01541	0.50	-0.6
1,650,771	+		CCNA_01541	0.55	+2.5
1,650,771	+		CCNA_01541	0.55	+2.6
1,650,790	-		CCNA_01541	0.57	+0.5
1,650,802	+		CCNA_01541	0.58	+1.3
1,650,810	+		CCNA_01541	0.59	+4.1
1,650,810	+		CCNA_01541	0.59	+1.6
1,650,810	+		CCNA_01541	0.59	+2.6
1,650,832	+		CCNA_01541	0.61	+2.0
1,651,015	+		CCNA_01541	0.82	+2.2
1,651,023	-		CCNA_01541	0.83	+1.4
1,651,027	+		CCNA_01541	0.83	+2.9
1,651,065	+		CCNA_01541	0.87	+4.6
1,651,097	-				-0.9
1,651,140	+				+2.0
1,651,269	+				-0.6
1,651,269	+				+2.3
1,651,283	+				+2.3
1,651,315	-				+1.1
1,651,315	-				-0.2
1,651,330	-				-1.3
1,651,330	-				+0.7
1,651,359	-				+0.4
1,651,371	-				-0.1
1,651,393	+				+0.8
1,651,536	+		CCNA_01542	0.15	-0.3
1,651,536	+		CCNA_01542	0.15	-0.2
1,651,568	-		CCNA_01542	0.17	-1.7
1,651,589	-		CCNA_01542	0.18	+1.5
1,651,603	+		CCNA_01542	0.18	+0.7
1,651,603	+		CCNA_01542	0.18	+0.5
1,651,603	+		CCNA_01542	0.18	+0.7
1,651,608	+		CCNA_01542	0.19	-0.9
1,651,616	-		CCNA_01542	0.19	-1.4
1,651,657	-		CCNA_01542	0.21	+0.5
1,651,676	-		CCNA_01542	0.22	+1.1
1,651,685	-		CCNA_01542	0.22	+0.0
1,651,689	+		CCNA_01542	0.22	-0.0
1,651,704	+		CCNA_01542	0.23	-0.6
1,651,724	-		CCNA_01542	0.24	-0.1
1,651,724	-		CCNA_01542	0.24	-0.5
1,651,745	-		CCNA_01542	0.25	-1.2
1,651,807	+		CCNA_01542	0.27	-0.5
1,651,807	+		CCNA_01542	0.27	-0.7
1,651,815	-		CCNA_01542	0.28	+1.7
1,651,829	+		CCNA_01542	0.28	-0.6
1,651,835	+		CCNA_01542	0.29	-1.0
1,651,835	+		CCNA_01542	0.29	+1.1
1,651,855	+		CCNA_01542	0.30	-1.0
1,651,872	+		CCNA_01542	0.30	+0.1
1,651,929	-		CCNA_01542	0.33	+0.0
1,651,939	+		CCNA_01542	0.33	-2.0
1,651,939	+		CCNA_01542	0.33	+1.7
1,651,944	+		CCNA_01542	0.33	-0.7
1,651,947	-		CCNA_01542	0.34	+0.2
1,651,947	-		CCNA_01542	0.34	+1.5
1,652,026	+		CCNA_01542	0.37	-0.2
1,652,028	+		CCNA_01542	0.37	-1.1
1,652,043	+		CCNA_01542	0.38	+2.0
1,652,059	+		CCNA_01542	0.38	-0.2
1,652,067	-		CCNA_01542	0.39	+1.6
1,652,067	-		CCNA_01542	0.39	+3.0
1,652,067	-		CCNA_01542	0.39	+0.0
1,652,067	-		CCNA_01542	0.39	-0.2
1,652,067	-		CCNA_01542	0.39	-0.8
1,652,105	+		CCNA_01542	0.41	-0.3
1,652,115	-		CCNA_01542	0.41	+0.7
1,652,154	+		CCNA_01542	0.43	-0.5