Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01521

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,628,661	-		CCNA_01519	0.46	-1.0
1,628,672	+		CCNA_01519	0.47	+0.3
1,628,672	+		CCNA_01519	0.47	+0.1
1,628,702	+		CCNA_01519	0.51	-0.5
1,628,702	+		CCNA_01519	0.51	+2.1
1,628,702	+		CCNA_01519	0.51	-0.3
1,628,710	-		CCNA_01519	0.52	+0.4
1,628,710	-		CCNA_01519	0.52	-0.7
1,628,714	-		CCNA_01519	0.52	+0.1
1,628,765	+		CCNA_01519	0.58	-0.6
1,628,817	+		CCNA_01519	0.65	+1.7
1,628,817	+		CCNA_01519	0.65	+1.6
1,628,825	-		CCNA_01519	0.66	-0.4
1,628,829	+		CCNA_01519	0.66	+0.8
1,628,859	-		CCNA_01519	0.70	+0.5
1,628,877	-		CCNA_01519	0.72	+0.2
1,628,908	+		CCNA_01519	0.76	+1.3
1,628,908	+		CCNA_01519	0.76	+0.7
1,628,908	+		CCNA_01519	0.76	+1.7
1,628,912	+		CCNA_01519	0.77	-1.1
1,628,912	+		CCNA_01519	0.77	-1.0
1,628,916	-		CCNA_01519	0.77	-0.4
1,628,916	-		CCNA_01519	0.77	-0.0
1,628,916	-		CCNA_01519	0.77	+0.3
1,628,916	-		CCNA_01519	0.77	+0.9
1,628,927	+		CCNA_01519	0.78	+0.0
1,628,929	+		CCNA_01519	0.79	+0.3
1,628,964	-		CCNA_01519	0.83	-0.0
1,628,999	-				+1.7
1,629,017	-		CCNA_01519	0.89	+1.0
1,629,050	+				+1.0
1,629,051	+				+0.7
1,629,051	+				-0.7
1,629,051	+				-1.2
1,629,051	+				-0.1
1,629,051	+				-1.1
1,629,051	+				-0.6
1,629,052	+				+0.2
1,629,059	-				+1.0
1,629,059	-				+1.0
1,629,059	-				-0.1
1,629,059	-				+1.1
1,629,059	-				-0.2
1,629,060	-				-0.8
1,629,061	+				+0.8
1,629,095	-				-0.4
1,629,152	+				+0.6
1,629,174	-		CCNA_01520	0.11	-0.2
1,629,177	+		CCNA_01520	0.11	-0.8
1,629,210	+				+3.0
1,629,246	+		CCNA_01520	0.30	+0.7
1,629,271	+		CCNA_01520	0.37	+0.4
1,629,271	+		CCNA_01520	0.37	+0.3
1,629,279	-		CCNA_01520	0.39	+2.0
1,629,279	-		CCNA_01520	0.39	+0.2
1,629,328	-		CCNA_01520	0.52	+0.2
1,629,328	-		CCNA_01520	0.52	+1.3
1,629,405	+		CCNA_01520	0.72	+1.7
1,629,446	-		CCNA_01520	0.83	-1.4
1,629,474	+				-0.3
1,629,482	-				+0.8
1,629,488	-				-1.3
1,629,490	+				-0.2
1,629,525	+				+0.4
1,629,582	+				+0.9
1,629,582	+				+1.3
1,629,583	+				-1.2
1,629,583	+				+0.5
1,629,585	-				+1.5
1,629,590	-				-1.1
1,629,590	-				+1.1
1,629,590	-				+1.7
1,629,590	-				+0.9
1,629,591	-				-1.7
1,629,593	+				-1.1
1,629,613	-				-1.2
1,629,690	+				+0.2
1,629,690	+				+1.0
1,629,690	+				-0.9
1,629,698	-				+0.7
1,629,698	-				+0.7
1,629,712	+				+0.5
1,629,712	-				-0.7
1,629,719	+				-1.9
1,629,719	+				+0.2
1,629,719	+				+0.1
1,629,719	+				-0.2
1,629,727	-		CCNA_01521	0.10	+0.5
1,629,744	-		CCNA_01521	0.12	+2.9
1,629,744	-		CCNA_01521	0.12	+1.5
1,629,744	-		CCNA_01521	0.12	+2.0
1,629,788	-		CCNA_01521	0.18	-1.0
1,629,839	-		CCNA_01521	0.24	+1.5
1,629,866	+		CCNA_01521	0.27	-0.5
1,629,878	+		CCNA_01521	0.29	-2.4
1,629,898	+		CCNA_01521	0.31	-0.6
1,629,906	-		CCNA_01521	0.32	+1.5
1,629,906	-		CCNA_01521	0.32	+2.0
1,629,908	+		CCNA_01521	0.32	+1.0
1,629,908	+		CCNA_01521	0.32	+1.7
1,629,925	+		CCNA_01521	0.35	+3.3
1,629,955	-		CCNA_01521	0.38	-1.0
1,629,955	-		CCNA_01521	0.38	+0.5
1,629,978	+		CCNA_01521	0.41	+2.1
1,629,985	+		CCNA_01521	0.42	-2.6
1,630,034	-		CCNA_01521	0.48	-2.8
1,630,054	+		CCNA_01521	0.50	-0.3
1,630,102	+		CCNA_01521	0.56	-0.4
1,630,116	-		CCNA_01521	0.58	+1.2
1,630,126	-		CCNA_01521	0.59	+0.5
1,630,153	+		CCNA_01521	0.62	-0.9
1,630,153	+		CCNA_01521	0.62	+0.7
1,630,161	-		CCNA_01521	0.63	+0.5
1,630,182	-		CCNA_01521	0.66	-0.5
1,630,236	+		CCNA_01521	0.73	+1.0
1,630,258	-		CCNA_01521	0.75	-1.2
1,630,263	-		CCNA_01521	0.76	+0.6
1,630,284	+		CCNA_01521	0.79	+0.5
1,630,297	-		CCNA_01521	0.80	+0.6
1,630,297	-		CCNA_01521	0.80	+2.7
1,630,353	-		CCNA_01521	0.87	+0.8
1,630,357	-		CCNA_01521	0.88	+2.3
1,630,359	-		CCNA_01521	0.88	+1.6
1,630,395	-				+1.7
1,630,397	+				-0.5
1,630,399	+				+0.4
1,630,399	+				+1.6
1,630,399	+				-0.6
1,630,407	-				+1.5
1,630,407	-				+1.9
1,630,407	-				+0.5
1,630,476	+				+0.1
1,630,479	-				+0.9
1,630,484	-				+0.5
1,630,486	+				-1.0
1,630,494	-				-0.1
1,630,494	-				+1.7
1,630,519	+				-0.1
1,630,563	+				-0.3
1,630,570	-				+2.7
1,630,610	-				+2.1
1,630,617	-				+1.2
1,630,636	+				+2.3
1,630,694	+		CCNA_01522	0.16	-0.5
1,630,698	-		CCNA_01522	0.16	+0.5
1,630,702	-		CCNA_01522	0.17	+0.6
1,630,702	-		CCNA_01522	0.17	+0.4
1,630,702	-		CCNA_01522	0.17	+0.3
1,630,727	+		CCNA_01522	0.20	-0.4
1,630,727	+		CCNA_01522	0.20	-0.7
1,630,727	+		CCNA_01522	0.20	+1.2
1,630,735	-		CCNA_01522	0.20	+1.8
1,630,735	-		CCNA_01522	0.20	+1.7
1,630,745	+		CCNA_01522	0.22	-0.8
1,630,745	+		CCNA_01522	0.22	+0.1
1,630,745	-		CCNA_01522	0.22	-0.6
1,630,745	-		CCNA_01522	0.22	+1.2
1,630,745	-		CCNA_01522	0.22	+0.9
1,630,761	-		CCNA_01522	0.23	+0.5
1,630,761	-		CCNA_01522	0.23	-0.2
1,630,823	+		CCNA_01522	0.31	+3.9
1,630,964	-		CCNA_01522	0.47	+0.2
1,630,980	-		CCNA_01522	0.49	+0.4
1,631,012	+		CCNA_01522	0.52	-0.9
1,631,020	-		CCNA_01522	0.53	+1.1
1,631,041	-		CCNA_01522	0.56	+1.2
1,631,114	-		CCNA_01522	0.64	-0.2
1,631,116	+		CCNA_01522	0.64	+1.7
1,631,124	-		CCNA_01522	0.65	+0.1
1,631,129	-		CCNA_01522	0.66	-1.7
1,631,130	-		CCNA_01522	0.66	+1.6
1,631,143	+		CCNA_01522	0.67	+0.2
1,631,151	-		CCNA_01522	0.68	-1.6
1,631,152	+		CCNA_01522	0.68	+3.8
1,631,160	-		CCNA_01522	0.69	+0.4
1,631,201	-		CCNA_01522	0.74	-0.3
1,631,247	+		CCNA_01522	0.79	+0.7
1,631,300	-		CCNA_01522	0.85	-0.2
1,631,328	+		CCNA_01522	0.89	+1.9
1,631,331	-		CCNA_01522	0.89	+0.2
1,631,331	-		CCNA_01522	0.89	+0.9
1,631,331	-		CCNA_01522	0.89	-0.5
1,631,336	-		CCNA_01522	0.90	-0.8
1,631,380	-				-1.4
1,631,407	+				+1.7
1,631,428	-				-0.6
1,631,428	-				+0.4