Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01374

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,487,276	+		CCNA_01372	0.73	-1.5
1,487,288	-		CCNA_01372	0.75	+0.4
1,487,303	+		CCNA_01372	0.78	+0.3
1,487,311	-		CCNA_01372	0.79	-1.4
1,487,321	-		CCNA_01372	0.80	-1.1
1,487,322	-		CCNA_01372	0.81	+0.5
1,487,322	-		CCNA_01372	0.81	+0.5
1,487,322	-		CCNA_01372	0.81	-0.5
1,487,324	+		CCNA_01372	0.81	-2.2
1,487,327	-		CCNA_01372	0.81	+0.9
1,487,373	+		CCNA_01372	0.89	-0.5
1,487,382	+				+0.8
1,487,411	+				+1.1
1,487,419	-				+1.3
1,487,419	-				+1.7
1,487,428	-				-1.1
1,487,429	-				-0.6
1,487,430	+				-0.2
1,487,438	-				+1.2
1,487,451	+				+0.5
1,487,451	+				-1.0
1,487,457	-				+2.0
1,487,458	+				+1.1
1,487,458	+				+0.3
1,487,466	-				+3.0
1,487,466	-				+0.7
1,487,542	-				-0.0
1,487,574	+				-1.2
1,487,597	+		CCNA_01373	0.11	+1.2
1,487,640	+		CCNA_01373	0.16	-1.3
1,487,700	-		CCNA_01373	0.23	-0.6
1,487,734	+		CCNA_01373	0.28	+0.7
1,487,736	-		CCNA_01373	0.28	+0.1
1,487,759	-		CCNA_01373	0.31	-0.2
1,487,761	+		CCNA_01373	0.31	-1.7
1,487,766	+		CCNA_01373	0.31	-0.5
1,487,766	+		CCNA_01373	0.31	-1.3
1,487,766	+		CCNA_01373	0.31	-2.1
1,487,774	-		CCNA_01373	0.32	-0.6
1,487,774	-		CCNA_01373	0.32	-1.2
1,487,774	-		CCNA_01373	0.32	+0.5
1,487,785	+		CCNA_01373	0.34	-1.0
1,487,803	+		CCNA_01373	0.36	+0.3
1,487,811	-		CCNA_01373	0.37	-1.0
1,487,814	+		CCNA_01373	0.37	-0.1
1,487,876	-		CCNA_01373	0.45	+0.7
1,487,882	-		CCNA_01373	0.46	-0.6
1,487,887	-		CCNA_01373	0.46	+1.3
1,487,921	-		CCNA_01373	0.51	+0.3
1,487,962	+		CCNA_01373	0.56	+3.5
1,487,985	+		CCNA_01373	0.59	+0.5
1,488,006	+		CCNA_01373	0.61	+0.1
1,488,009	+		CCNA_01373	0.62	+1.1
1,488,013	+		CCNA_01373	0.62	-0.5
1,488,014	-		CCNA_01373	0.62	-2.1
1,488,099	-		CCNA_01373	0.73	-0.7
1,488,162	+		CCNA_01373	0.81	+1.8
1,488,171	-		CCNA_01373	0.82	+0.8
1,488,202	+		CCNA_01373	0.86	-0.2
1,488,210	-		CCNA_01373	0.86	-1.9
1,488,219	+		CCNA_01373	0.88	-1.5
1,488,268	-				+0.7
1,488,274	-				+0.2
1,488,311	+				-0.8
1,488,371	+				-0.7
1,488,424	+				-0.6
1,488,424	+				-0.8
1,488,558	+		CCNA_01374	0.16	-1.6
1,488,558	+		CCNA_01374	0.16	+1.0
1,488,558	+		CCNA_01374	0.16	-1.0
1,488,566	-		CCNA_01374	0.17	-0.1
1,488,566	-		CCNA_01374	0.17	-0.8
1,488,620	+		CCNA_01374	0.19	+1.7
1,488,645	+		CCNA_01374	0.21	+0.9
1,488,657	+		CCNA_01374	0.21	-0.5
1,488,687	+		CCNA_01374	0.23	+0.8
1,488,687	+		CCNA_01374	0.23	+1.1
1,488,687	+		CCNA_01374	0.23	+0.4
1,488,687	+		CCNA_01374	0.23	-0.8
1,488,687	+		CCNA_01374	0.23	-0.3
1,488,687	+		CCNA_01374	0.23	+1.2
1,488,687	+		CCNA_01374	0.23	+2.5
1,488,687	+		CCNA_01374	0.23	+0.9
1,488,687	+		CCNA_01374	0.23	-0.3
1,488,687	+		CCNA_01374	0.23	-0.6
1,488,695	-		CCNA_01374	0.23	-0.9
1,488,695	-		CCNA_01374	0.23	-0.7
1,488,695	-		CCNA_01374	0.23	-0.2
1,488,705	+		CCNA_01374	0.24	+0.1
1,488,728	+		CCNA_01374	0.25	+1.5
1,488,828	+		CCNA_01374	0.30	+2.1
1,488,887	+		CCNA_01374	0.33	+1.0
1,488,889	-		CCNA_01374	0.33	-0.9
1,488,889	-		CCNA_01374	0.33	+0.8
1,488,909	+		CCNA_01374	0.34	+2.4
1,488,933	+		CCNA_01374	0.36	+0.4
1,488,941	-		CCNA_01374	0.36	+2.1
1,489,034	-		CCNA_01374	0.41	+0.7
1,489,035	+				+2.5
1,489,043	-		CCNA_01374	0.41	-0.1
1,489,081	-		CCNA_01374	0.43	+0.8
1,489,081	-		CCNA_01374	0.43	+0.7
1,489,111	+		CCNA_01374	0.45	+1.7
1,489,111	+		CCNA_01374	0.45	+2.0
1,489,111	+		CCNA_01374	0.45	+1.9
1,489,111	+		CCNA_01374	0.45	+2.6
1,489,111	+		CCNA_01374	0.45	+1.6
1,489,111	+		CCNA_01374	0.45	+2.0
1,489,111	+		CCNA_01374	0.45	+1.2
1,489,111	+		CCNA_01374	0.45	+4.0
1,489,162	-		CCNA_01374	0.47	-1.7
1,489,173	+		CCNA_01374	0.48	-1.3
1,489,181	-		CCNA_01374	0.48	+0.9
1,489,181	-		CCNA_01374	0.48	+0.3
1,489,182	+		CCNA_01374	0.48	+0.9
1,489,183	+		CCNA_01374	0.48	-1.5
1,489,183	+				+1.1
1,489,183	+		CCNA_01374	0.48	-0.4
1,489,185	-		CCNA_01374	0.49	-0.3
1,489,191	-		CCNA_01374	0.49	-0.4
1,489,191	-		CCNA_01374	0.49	-0.4
1,489,191	-		CCNA_01374	0.49	+0.5
1,489,217	+		CCNA_01374	0.50	-2.0
1,489,219	-		CCNA_01374	0.50	-1.0
1,489,250	-		CCNA_01374	0.52	-0.1
1,489,271	+		CCNA_01374	0.53	+1.3
1,489,293	+		CCNA_01374	0.54	+0.1
1,489,293	+		CCNA_01374	0.54	-0.1
1,489,301	-		CCNA_01374	0.55	+0.8
1,489,301	-		CCNA_01374	0.55	+1.3
1,489,357	+		CCNA_01374	0.58	+0.2
1,489,357	+				+1.3
1,489,357	+		CCNA_01374	0.58	+0.3
1,489,365	-		CCNA_01374	0.58	+1.8
1,489,365	-		CCNA_01374	0.58	-0.6
1,489,365	-		CCNA_01374	0.58	+0.5
1,489,365	-		CCNA_01374	0.58	+0.5
1,489,404	+		CCNA_01374	0.60	+0.5
1,489,405	+		CCNA_01374	0.60	+0.4
1,489,413	-		CCNA_01374	0.60	+0.3
1,489,413	-		CCNA_01374	0.60	-1.6
1,489,428	+		CCNA_01374	0.61	+0.5
1,489,436	-		CCNA_01374	0.62	-0.1
1,489,449	-		CCNA_01374	0.62	+1.3
1,489,458	-		CCNA_01374	0.63	-1.7
1,489,468	-		CCNA_01374	0.63	-0.2
1,489,492	-		CCNA_01374	0.64	+1.5
1,489,503	+		CCNA_01374	0.65	-2.1
1,489,505	-		CCNA_01374	0.65	-2.6
1,489,530	+		CCNA_01374	0.66	+1.1
1,489,530	+		CCNA_01374	0.66	-0.1
1,489,530	+		CCNA_01374	0.66	+0.1
1,489,538	-		CCNA_01374	0.67	+0.9
1,489,538	-		CCNA_01374	0.67	+0.7
1,489,545	+				+1.3
1,489,560	+		CCNA_01374	0.68	-1.1
1,489,564	+		CCNA_01374	0.68	+0.5
1,489,570	+		CCNA_01374	0.69	+4.1
1,489,577	-		CCNA_01374	0.69	+0.0
1,489,582	-		CCNA_01374	0.69	+1.3
1,489,607	+		CCNA_01374	0.70	-0.3
1,489,630	+		CCNA_01374	0.72	+2.6
1,489,630	+		CCNA_01374	0.72	-0.2
1,489,630	+		CCNA_01374	0.72	+0.4
1,489,630	+		CCNA_01374	0.72	+0.8
1,489,630	+		CCNA_01374	0.72	+1.5
1,489,630	+		CCNA_01374	0.72	+1.5
1,489,638	-		CCNA_01374	0.72	-1.5
1,489,644	+		CCNA_01374	0.72	-2.3
1,489,691	-		CCNA_01374	0.75	-0.2
1,489,698	+				+2.7
1,489,749	-		CCNA_01374	0.78	+0.5
1,489,763	+		CCNA_01374	0.79	-1.0
1,489,788	+		CCNA_01374	0.80	+1.3
1,489,814	+		CCNA_01374	0.81	-1.0
1,489,834	+		CCNA_01374	0.82	+0.4
1,489,849	+		CCNA_01374	0.83	-0.9
1,489,849	+		CCNA_01374	0.83	-0.3
1,489,849	+		CCNA_01374	0.83	-0.1
1,489,849	+		CCNA_01374	0.83	+0.0
1,489,849	+				+1.8
1,489,849	+		CCNA_01374	0.83	+1.3
1,489,899	+		CCNA_01374	0.86	-2.1
1,489,899	+		CCNA_01374	0.86	+0.8
1,489,947	+		CCNA_01374	0.88	-1.1
1,489,947	+		CCNA_01374	0.88	+1.8
1,489,980	+		CCNA_01374	0.90	-0.7
1,489,985	+				-0.6
1,489,988	-				-0.6
1,489,991	+				+2.1
1,489,999	-				-1.9
1,489,999	-				-1.6
1,490,131	+				-1.3
1,490,172	+				+0.4
1,490,172	+				-0.7
1,490,172	+				+0.8
1,490,172	+				-2.1
1,490,178	+				-1.1
1,490,179	-				+0.1
1,490,179	-				-1.9
1,490,179	-				-0.7
1,490,180	-				-1.0
1,490,180	-				-1.2
1,490,180	-				-0.1
1,490,196	-				-0.6
1,490,198	+				-0.4
1,490,206	-				-0.7
1,490,228	-				+1.1
1,490,304	+		CCNA_01375	0.15	+1.6
1,490,305	+		CCNA_01375	0.15	+1.2
1,490,305	+		CCNA_01375	0.15	-0.0
1,490,305	+		CCNA_01375	0.15	+2.9
1,490,305	+		CCNA_01375	0.15	+1.3
1,490,381	-		CCNA_01375	0.33	+1.5
1,490,402	+		CCNA_01375	0.37	+0.3
1,490,407	+		CCNA_01375	0.39	-0.2
1,490,480	+		CCNA_01375	0.55	+1.1
1,490,533	-		CCNA_01375	0.67	+0.2
1,490,548	-		CCNA_01375	0.71	+1.1
1,490,559	-		CCNA_01375	0.73	+0.8
1,490,586	+		CCNA_01375	0.79	+1.2
1,490,594	-		CCNA_01375	0.81	-0.5
1,490,607	+		CCNA_01375	0.84	+3.6
1,490,607	-		CCNA_01375	0.84	+1.4
1,490,668	-				+1.3
1,490,676	-				-2.6
1,490,782	-				-0.1
1,490,782	-				-0.1
1,490,782	-				-0.9
1,490,821	-				+0.3
1,490,828	+				-0.0
1,490,836	+				-1.2
1,490,854	+				+0.3
1,490,880	+				+0.9
1,490,885	+				-0.1
1,490,888	-				+1.3
1,490,918	+				+2.4
1,490,923	+				+0.9
1,490,926	-		CCNA_01376	0.10	+0.1
1,490,944	+		CCNA_01376	0.13	-0.4
1,490,952	-		CCNA_01376	0.14	-0.1
1,490,960	-		CCNA_01376	0.15	-0.1
1,490,974	-		CCNA_01376	0.17	+1.3
1,490,976	+		CCNA_01376	0.17	+1.1
1,490,976	+		CCNA_01376	0.17	-0.9
1,490,979	-		CCNA_01376	0.18	+1.1
1,490,981	+		CCNA_01376	0.18	-0.1
1,490,984	-				+1.3
1,490,999	+		CCNA_01376	0.21	+1.7
1,490,999	+		CCNA_01376	0.21	+0.7
1,491,004	+		CCNA_01376	0.21	-1.1
1,491,022	-		CCNA_01376	0.24	+0.7
1,491,113	+		CCNA_01376	0.37	-0.7
1,491,113	+		CCNA_01376	0.37	+2.4
1,491,121	-		CCNA_01376	0.38	+0.0
1,491,169	-		CCNA_01376	0.45	-0.6