Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01072

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,177,949	-		CCNA_01071	0.45	+0.6
1,177,955	-		CCNA_01071	0.46	+0.2
1,177,960	-		CCNA_01071	0.46	+0.3
1,177,960	-		CCNA_01071	0.46	-1.0
1,177,965	-		CCNA_01071	0.46	-0.2
1,177,965	-		CCNA_01071	0.46	-0.7
1,177,965	-		CCNA_01071	0.46	-1.4
1,177,965	-		CCNA_01071	0.46	+0.6
1,178,034	-		CCNA_01071	0.51	+0.1
1,178,037	-		CCNA_01071	0.51	-2.0
1,178,039	-		CCNA_01071	0.52	-0.5
1,178,053	+		CCNA_01071	0.53	-0.7
1,178,090	+		CCNA_01071	0.55	-0.9
1,178,090	+		CCNA_01071	0.55	-0.7
1,178,096	-		CCNA_01071	0.56	-0.5
1,178,096	-		CCNA_01071	0.56	-0.4
1,178,096	-		CCNA_01071	0.56	-1.0
1,178,098	-		CCNA_01071	0.56	+1.8
1,178,098	-		CCNA_01071	0.56	-0.5
1,178,098	-		CCNA_01071	0.56	+0.1
1,178,098	-		CCNA_01071	0.56	+0.2
1,178,124	+		CCNA_01071	0.58	-1.7
1,178,124	+		CCNA_01071	0.58	+0.7
1,178,205	+		CCNA_01071	0.63	-1.4
1,178,243	+		CCNA_01071	0.66	+0.7
1,178,264	+		CCNA_01071	0.67	-0.4
1,178,308	-		CCNA_01071	0.70	+0.3
1,178,309	-		CCNA_01071	0.70	-1.0
1,178,309	-		CCNA_01071	0.70	-1.2
1,178,309	-		CCNA_01071	0.70	-1.7
1,178,309	-		CCNA_01071	0.70	-1.5
1,178,309	-		CCNA_01071	0.70	+1.6
1,178,330	-		CCNA_01071	0.72	-0.7
1,178,351	-				+1.4
1,178,364	+		CCNA_01071	0.74	+1.4
1,178,372	-		CCNA_01071	0.75	-1.2
1,178,395	+		CCNA_01071	0.76	-0.2
1,178,395	-		CCNA_01071	0.76	-1.6
1,178,434	+		CCNA_01071	0.79	+0.3
1,178,442	-		CCNA_01071	0.80	-2.5
1,178,465	-		CCNA_01071	0.81	-0.2
1,178,488	+		CCNA_01071	0.83	-1.1
1,178,495	+		CCNA_01071	0.83	-1.4
1,178,496	-		CCNA_01071	0.83	+3.5
1,178,589	-				+0.9
1,178,602	+				+0.6
1,178,621	-				+0.2
1,178,670	+				-0.6
1,178,675	+				-1.8
1,178,678	-				-0.9
1,178,678	-				-0.4
1,178,681	+				+0.8
1,178,691	+				-1.5
1,178,699	-				+0.7
1,178,880	-				+1.1
1,178,893	+				+0.4
1,178,896	-				-1.4
1,178,901	-				-0.4
1,178,903	+				+2.4
1,178,931	-		CCNA_01072	0.16	+0.6
1,178,941	-		CCNA_01072	0.22	+0.5
1,178,948	+		CCNA_01072	0.27	+0.6
1,178,953	+		CCNA_01072	0.30	+0.3
1,178,956	-		CCNA_01072	0.32	+0.9
1,178,956	-		CCNA_01072	0.32	+0.2
1,178,956	-		CCNA_01072	0.32	-1.1
1,178,956	-		CCNA_01072	0.32	-2.5
1,178,956	-		CCNA_01072	0.32	-0.4
1,178,956	-		CCNA_01072	0.32	+0.6
1,178,961	-		CCNA_01072	0.35	-0.2
1,178,981	-		CCNA_01072	0.48	+1.8
1,178,998	-		CCNA_01072	0.59	-1.6
1,179,003	-		CCNA_01072	0.62	+2.0
1,179,025	-		CCNA_01072	0.76	+0.3
1,179,030	-		CCNA_01072	0.79	-1.5
1,179,063	+				-1.7
1,179,063	+				-0.7
1,179,063	+				+5.0
1,179,071	-				-2.2
1,179,071	-				-0.3
1,179,088	-				-2.3
1,179,109	+				+1.4
1,179,110	+				+0.1
1,179,117	-				+0.1
1,179,139	+				-0.1
1,179,171	-				+1.0
1,179,173	-				+0.3
1,179,177	+				-0.8
1,179,185	-				-0.1
1,179,185	-				-0.6
1,179,211	+		CCNA_01073	0.12	+0.3
1,179,211	+		CCNA_01073	0.12	-2.8
1,179,219	-		CCNA_01073	0.14	-0.2
1,179,219	-		CCNA_01073	0.14	+0.4
1,179,219	-		CCNA_01073	0.14	-1.7
1,179,219	-		CCNA_01073	0.14	+0.0
1,179,219	-		CCNA_01073	0.14	-1.4
1,179,226	+		CCNA_01073	0.16	+1.0
1,179,226	+		CCNA_01073	0.16	-1.5
1,179,226	+		CCNA_01073	0.16	+0.2
1,179,242	+		CCNA_01073	0.20	+1.8
1,179,251	-		CCNA_01073	0.22	+1.2
1,179,251	-		CCNA_01073	0.22	+0.5
1,179,251	-		CCNA_01073	0.22	-0.1
1,179,252	+		CCNA_01073	0.22	+1.5
1,179,252	+		CCNA_01073	0.22	-0.6
1,179,277	-		CCNA_01073	0.28	-0.5
1,179,340	+		CCNA_01073	0.45	-1.5
1,179,348	-		CCNA_01073	0.47	-0.5
1,179,409	-		CCNA_01073	0.62	+0.9
1,179,448	-		CCNA_01073	0.72	-0.1
1,179,448	-		CCNA_01073	0.72	-1.1
1,179,448	-		CCNA_01073	0.72	+0.2
1,179,448	-		CCNA_01073	0.72	+0.5
1,179,448	-		CCNA_01073	0.72	-0.4
1,179,459	+		CCNA_01073	0.75	+0.4
1,179,504	+		CCNA_01073	0.86	+0.2
1,179,510	-		CCNA_01073	0.88	-0.3
1,179,512	-		CCNA_01073	0.88	+1.6
1,179,531	+				-1.9
1,179,531	+				-0.5
1,179,539	-				+0.9
1,179,608	+				-0.3
1,179,612	-				+0.3
1,179,614	+				-1.0
1,179,615	+				-1.0
1,179,622	+				+0.8
1,179,622	-				-0.8
1,179,622	-				+0.5
1,179,623	-				+0.4
1,179,644	+		CCNA_01074	0.20	+0.5
1,179,685	-		CCNA_01074	0.49	+2.1
1,179,790	-				+0.3
1,179,794	+				-1.9
1,179,797	-				+1.2
1,179,797	-				-1.3
1,179,838	-				+0.0
1,179,845	-				+1.7
1,179,847	+				-0.8
1,179,847	+				-0.3
1,179,855	-				+2.2
1,179,876	-				+0.5
1,179,902	+		CCNA_01075	0.13	-0.3
1,179,902	-		CCNA_01075	0.13	+1.2
1,179,910	-		CCNA_01075	0.15	+0.9
1,179,915	+		CCNA_01075	0.16	-1.3
1,179,923	-		CCNA_01075	0.18	-0.1
1,179,923	-		CCNA_01075	0.18	-0.2
1,179,970	-		CCNA_01075	0.29	+0.9
1,180,007	-		CCNA_01075	0.38	-1.5
1,180,022	+		CCNA_01075	0.41	-0.9
1,180,030	-		CCNA_01075	0.43	-1.1