Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01008

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,085,813	+		CCNA_01005	0.38	+0.9
1,085,828	+		CCNA_01005	0.42	-0.2
1,085,882	+		CCNA_01005	0.55	+2.6
1,085,927	+		CCNA_01005	0.65	-0.1
1,085,927	+		CCNA_01005	0.65	+1.1
1,085,927	+		CCNA_01005	0.65	+1.0
1,085,935	-		CCNA_01005	0.67	+2.7
1,085,935	-		CCNA_01005	0.67	+3.0
1,085,935	-		CCNA_01005	0.67	+3.0
1,085,936	-		CCNA_01005	0.68	+2.5
1,085,936	-		CCNA_01005	0.68	+2.9
1,085,940	-		CCNA_01005	0.69	-1.0
1,085,942	+		CCNA_01005	0.69	+0.4
1,085,974	+		CCNA_01005	0.77	+0.9
1,085,995	+		CCNA_01005	0.82	+2.4
1,086,015	-		CCNA_01005	0.86	-1.2
1,086,016	-		CCNA_01005	0.87	-1.8
1,086,025	-		CCNA_01005	0.89	-0.8
1,086,042	-				+1.3
1,086,066	+				+2.9
1,086,072	+				+3.6
1,086,079	+				+2.1
1,086,108	+				+1.1
1,086,108	+				+2.4
1,086,116	-		CCNA_01006	0.11	-1.1
1,086,143	+		CCNA_01006	0.20	+2.5
1,086,163	+		CCNA_01006	0.26	+3.4
1,086,168	+		CCNA_01006	0.28	+1.9
1,086,168	+		CCNA_01006	0.28	+1.0
1,086,168	+		CCNA_01006	0.28	+2.6
1,086,176	-		CCNA_01006	0.30	-0.2
1,086,195	+		CCNA_01006	0.36	+2.7
1,086,201	-		CCNA_01006	0.38	-0.0
1,086,205	+		CCNA_01006	0.39	+2.8
1,086,213	-				+2.0
1,086,227	-		CCNA_01006	0.46	+0.5
1,086,243	+		CCNA_01006	0.52	+2.3
1,086,310	+		CCNA_01006	0.73	+3.0
1,086,310	+		CCNA_01006	0.73	+2.6
1,086,318	-		CCNA_01006	0.76	-0.6
1,086,318	-		CCNA_01006	0.76	-0.6
1,086,410	-				-1.1
1,086,495	-				+1.4
1,086,519	-		CCNA_01007	0.14	+1.8
1,086,536	+		CCNA_01007	0.24	+0.5
1,086,536	+		CCNA_01007	0.24	-1.7
1,086,536	+		CCNA_01007	0.24	+0.8
1,086,536	+		CCNA_01007	0.24	-1.1
1,086,540	+		CCNA_01007	0.26	-2.0
1,086,544	-		CCNA_01007	0.29	+0.6
1,086,544	-		CCNA_01007	0.29	+1.7
1,086,544	-		CCNA_01007	0.29	+2.0
1,086,550	+		CCNA_01007	0.32	-0.2
1,086,556	-		CCNA_01007	0.36	+0.7
1,086,608	-		CCNA_01007	0.67	+1.6
1,086,651	-				+2.0
1,086,659	+				+1.8
1,086,670	+				-1.7
1,086,672	+				+0.2
1,086,680	-				+2.2
1,086,695	+				-0.4
1,086,703	-				+3.7
1,086,751	-				+2.4
1,086,817	+				-1.0
1,086,817	+				-2.0
1,086,817	+				-0.9
1,086,825	-				+4.0
1,086,825	-				+3.0
1,086,825	-				+3.5
1,086,825	-				+2.9
1,086,842	+				-0.7
1,086,845	-				+4.0
1,086,850	-				+3.3
1,086,850	-				+3.4
1,086,850	-				+3.9
1,086,850	-				+3.8
1,086,854	+				+0.6
1,086,854	+				+1.6
1,086,854	+				-2.6
1,086,862	-				+4.1
1,086,862	-				+3.0
1,086,862	-				+3.1
1,086,862	-				+3.4
1,086,862	-				+4.6
1,086,862	-				+3.0
1,086,897	+				+1.0
1,086,900	+				-0.6
1,086,980	+		CCNA_01008	0.11	-1.3
1,086,980	+		CCNA_01008	0.11	-0.2
1,086,988	-		CCNA_01008	0.11	+3.9
1,086,988	-		CCNA_01008	0.11	+3.8
1,086,988	-		CCNA_01008	0.11	+3.8
1,087,020	-		CCNA_01008	0.13	+3.4
1,087,035	+		CCNA_01008	0.14	-1.5
1,087,035	+		CCNA_01008	0.14	-1.5
1,087,055	-		CCNA_01008	0.15	+3.5
1,087,064	+		CCNA_01008	0.16	+0.1
1,087,064	+		CCNA_01008	0.16	+2.5
1,087,070	-		CCNA_01008	0.16	+3.5
1,087,072	-		CCNA_01008	0.16	+4.1
1,087,072	-		CCNA_01008	0.16	+3.6
1,087,072	-		CCNA_01008	0.16	+3.3
1,087,072	-		CCNA_01008	0.16	+3.1
1,087,133	+		CCNA_01008	0.20	+0.3
1,087,141	-		CCNA_01008	0.20	+3.4
1,087,141	-		CCNA_01008	0.20	+3.2
1,087,149	-		CCNA_01008	0.21	+3.7
1,087,176	+		CCNA_01008	0.23	+1.4
1,087,176	+		CCNA_01008	0.23	+0.4
1,087,178	-		CCNA_01008	0.23	+4.6
1,087,207	-		CCNA_01008	0.24	+3.4
1,087,224	+		CCNA_01008	0.25	-2.2
1,087,289	-		CCNA_01008	0.29	+3.1
1,087,295	+		CCNA_01008	0.30	+0.4
1,087,303	+		CCNA_01008	0.30	-0.2
1,087,334	-		CCNA_01008	0.32	+3.7
1,087,396	-		CCNA_01008	0.36	+4.2
1,087,396	-		CCNA_01008	0.36	+2.8
1,087,404	+		CCNA_01008	0.36	-1.1
1,087,412	-		CCNA_01008	0.37	+3.6
1,087,412	-		CCNA_01008	0.37	+3.4
1,087,412	-		CCNA_01008	0.37	+3.0
1,087,412	-		CCNA_01008	0.37	+3.0
1,087,412	-		CCNA_01008	0.37	+3.4
1,087,447	+		CCNA_01008	0.39	-1.4
1,087,463	-		CCNA_01008	0.40	+3.0
1,087,468	-		CCNA_01008	0.40	+3.2
1,087,473	-		CCNA_01008	0.40	+3.0
1,087,475	-		CCNA_01008	0.41	+3.4
1,087,547	-		CCNA_01008	0.45	+3.1
1,087,553	-		CCNA_01008	0.45	+2.4
1,087,553	-		CCNA_01008	0.45	+3.2
1,087,632	-		CCNA_01008	0.50	+2.8
1,087,649	-		CCNA_01008	0.51	+4.3
1,087,653	+		CCNA_01008	0.51	-0.6
1,087,676	+		CCNA_01008	0.53	+0.6
1,087,679	-		CCNA_01008	0.53	+3.0
1,087,684	-		CCNA_01008	0.53	+2.7
1,087,718	-		CCNA_01008	0.55	+3.1
1,087,718	-		CCNA_01008	0.55	+3.6
1,087,751	-		CCNA_01008	0.57	+2.7
1,087,799	+		CCNA_01008	0.60	+0.7
1,087,807	-		CCNA_01008	0.60	+3.4
1,087,807	-		CCNA_01008	0.60	+3.3
1,087,807	-		CCNA_01008	0.60	+3.2
1,087,807	-		CCNA_01008	0.60	+3.3
1,087,809	+		CCNA_01008	0.61	+3.7
1,087,816	-		CCNA_01008	0.61	+3.5
1,087,832	+		CCNA_01008	0.62	+1.0
1,087,847	+		CCNA_01008	0.63	+0.3
1,087,927	+		CCNA_01008	0.68	+0.1
1,087,999	-		CCNA_01008	0.72	+3.0
1,088,017	+		CCNA_01008	0.73	+0.3
1,088,023	-		CCNA_01008	0.73	+3.4
1,088,025	-		CCNA_01008	0.74	+2.9
1,088,028	-		CCNA_01008	0.74	+2.9
1,088,028	-		CCNA_01008	0.74	+3.1
1,088,035	-		CCNA_01008	0.74	+2.1
1,088,090	+		CCNA_01008	0.77	-2.2
1,088,103	+		CCNA_01008	0.78	+1.7
1,088,111	-		CCNA_01008	0.79	+3.5
1,088,122	+		CCNA_01008	0.79	+1.7
1,088,122	+		CCNA_01008	0.79	-2.2
1,088,130	-		CCNA_01008	0.80	+3.1
1,088,130	-		CCNA_01008	0.80	+2.3
1,088,133	+		CCNA_01008	0.80	-1.2
1,088,135	-		CCNA_01008	0.80	+3.1
1,088,136	-		CCNA_01008	0.80	+3.4
1,088,141	-		CCNA_01008	0.81	+3.6
1,088,148	+		CCNA_01008	0.81	-0.6
1,088,148	+		CCNA_01008	0.81	-0.5
1,088,156	-		CCNA_01008	0.81	+4.8
1,088,156	-		CCNA_01008	0.81	+3.2
1,088,241	+		CCNA_01008	0.87	-1.5
1,088,249	-		CCNA_01008	0.87	+2.8
1,088,252	+		CCNA_01008	0.87	-0.3
1,088,267	-		CCNA_01008	0.88	+2.2
1,088,272	+		CCNA_01008	0.88	-1.9
1,088,280	-		CCNA_01008	0.89	+3.0
1,088,280	-		CCNA_01008	0.89	+2.9
1,088,280	-		CCNA_01008	0.89	+2.5
1,088,280	-		CCNA_01008	0.89	+3.9
1,088,288	+		CCNA_01008	0.89	-1.7
1,088,312	+				-0.2
1,088,393	-				+3.3
1,088,393	-				+3.4
1,088,394	+				+3.2
1,088,414	+				-1.9
1,088,420	-				+3.1
1,088,422	-				+2.7
1,088,459	+				+1.2
1,088,459	+				-0.1
1,088,459	+				+1.2
1,088,459	+				-1.7
1,088,467	-				+2.8
1,088,467	-				+2.8
1,088,469	-				+3.0
1,088,480	-				+2.7
1,088,480	-				+2.7
1,088,489	-				+2.4
1,088,494	-				+2.5
1,088,494	-				+3.5
1,088,495	-				+2.7
1,088,501	-				+2.6
1,088,512	-				+3.5
1,088,512	-				+2.7
1,088,520	+				-0.8
1,088,528	-				+2.3
1,088,528	-				+2.8
1,088,549	-				+3.4
1,088,553	+				+0.5
1,088,607	+				+0.4
1,088,616	+				+0.4
1,088,629	+				+0.5
1,088,629	+				+0.4
1,088,639	-				+2.7
1,088,639	-				+2.0
1,088,639	-				+3.6
1,088,673	-		CCNA_01009	0.10	+2.2
1,088,673	-		CCNA_01009	0.10	+1.4
1,088,685	+		CCNA_01009	0.12	-0.0
1,088,688	-		CCNA_01009	0.12	+2.3
1,088,693	-		CCNA_01009	0.13	+2.0
1,088,741	-		CCNA_01009	0.19	+2.4
1,088,742	+		CCNA_01009	0.19	+1.0
1,088,797	-		CCNA_01009	0.25	+2.4
1,088,800	+		CCNA_01009	0.26	-1.0
1,088,826	+		CCNA_01009	0.29	-0.0
1,088,826	+		CCNA_01009	0.29	-1.8
1,088,826	+		CCNA_01009	0.29	-0.4
1,088,826	+		CCNA_01009	0.29	-0.2
1,088,834	-		CCNA_01009	0.30	+2.4
1,088,834	-		CCNA_01009	0.30	+2.6
1,088,834	-		CCNA_01009	0.30	+3.4
1,088,834	-		CCNA_01009	0.30	+2.4
1,088,834	-		CCNA_01009	0.30	+2.8
1,088,834	-				+3.6
1,088,834	-		CCNA_01009	0.30	+2.8
1,088,834	-		CCNA_01009	0.30	+2.4
1,088,865	+		CCNA_01009	0.34	-0.8
1,088,873	-		CCNA_01009	0.35	+2.9
1,088,883	+		CCNA_01009	0.36	-0.7
1,088,886	-		CCNA_01009	0.36	+2.4
1,088,891	-		CCNA_01009	0.37	+2.8
1,088,891	-		CCNA_01009	0.37	+3.0
1,088,913	-		CCNA_01009	0.40	+1.9
1,088,913	-		CCNA_01009	0.40	+3.2
1,088,955	+		CCNA_01009	0.45	+0.5
1,089,012	-		CCNA_01009	0.52	+2.6
1,089,018	+		CCNA_01009	0.53	+1.2
1,089,021	-		CCNA_01009	0.53	+1.7
1,089,026	-		CCNA_01009	0.54	+2.8
1,089,028	+		CCNA_01009	0.54	-0.6
1,089,036	-		CCNA_01009	0.55	+0.9
1,089,139	+		CCNA_01009	0.67	+0.7
1,089,139	+		CCNA_01009	0.67	-0.8
1,089,149	+		CCNA_01009	0.69	+1.2
1,089,157	-		CCNA_01009	0.70	+2.0
1,089,162	-		CCNA_01009	0.70	-0.3
1,089,162	-		CCNA_01009	0.70	+2.1
1,089,197	-		CCNA_01009	0.75	+3.0
1,089,258	-		CCNA_01009	0.82	+2.9
1,089,343	+				-0.5
1,089,368	-				+2.9
1,089,385	+				-0.7
1,089,456	-				+2.6