Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00915

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00912 and CCNA_00913 are separated by 49 nucleotidesCCNA_00913 and CCNA_00914 are separated by 78 nucleotidesCCNA_00914 and CCNA_00915 are separated by 131 nucleotidesCCNA_00915 and CCNA_00916 are separated by 0 nucleotidesCCNA_00916 and CCNA_00917 overlap by 4 nucleotidesCCNA_00917 and CCNA_00918 are separated by 73 nucleotides CCNA_00912: CCNA_00912 - beta-lactamase family protein, at 991,916 to 992,983 _00912 CCNA_00913: CCNA_00913 - hypothetical protein, at 993,033 to 993,209 _00913 CCNA_00914: CCNA_00914 - acetyltransferase, at 993,288 to 993,815 _00914 CCNA_00915: CCNA_00915 - Molybdenum cofactor sulfurase related protein, at 993,947 to 994,708 _00915 CCNA_00916: CCNA_00916 - toxin protein parE-1, at 994,709 to 994,999 _00916 CCNA_00917: CCNA_00917 - antitoxin protein parD-1, at 994,996 to 995,262 _00917 CCNA_00918: CCNA_00918 - peptide release factor-glutamine N5-methyltransferase, at 995,336 to 996,205 _00918 Position (kb) 993 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 992.962 kb on + strandat 993.007 kb on - strandat 993.007 kb on - strandat 993.012 kb on - strandat 993.023 kb on - strandat 993.041 kb on + strandat 993.044 kb on - strandat 993.059 kb on - strand, within CCNA_00913at 993.085 kb on + strand, within CCNA_00913at 993.093 kb on - strand, within CCNA_00913at 993.093 kb on - strand, within CCNA_00913at 993.093 kb on - strand, within CCNA_00913at 993.133 kb on - strand, within CCNA_00913at 993.138 kb on - strand, within CCNA_00913at 993.138 kb on - strand, within CCNA_00913at 993.146 kb on + strand, within CCNA_00913at 993.173 kb on - strand, within CCNA_00913at 993.175 kb on - strand, within CCNA_00913at 993.206 kb on + strandat 993.218 kb on - strandat 993.241 kb on + strandat 993.323 kb on - strandat 993.327 kb on - strandat 993.346 kb on - strand, within CCNA_00914at 993.366 kb on + strand, within CCNA_00914at 993.374 kb on - strand, within CCNA_00914at 993.374 kb on - strand, within CCNA_00914at 993.448 kb on + strand, within CCNA_00914at 993.455 kb on - strand, within CCNA_00914at 993.456 kb on - strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.482 kb on - strand, within CCNA_00914at 993.500 kb on - strand, within CCNA_00914at 993.515 kb on - strand, within CCNA_00914at 993.527 kb on - strand, within CCNA_00914at 993.533 kb on + strand, within CCNA_00914at 993.551 kb on - strand, within CCNA_00914at 993.555 kb on + strand, within CCNA_00914at 993.558 kb on + strand, within CCNA_00914at 993.607 kb on + strand, within CCNA_00914at 993.610 kb on - strand, within CCNA_00914at 993.610 kb on - strand, within CCNA_00914at 993.617 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.636 kb on + strand, within CCNA_00914at 993.646 kb on + strand, within CCNA_00914at 993.704 kb on - strand, within CCNA_00914at 993.718 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.725 kb on - strand, within CCNA_00914at 993.731 kb on - strand, within CCNA_00914at 993.754 kb on + strand, within CCNA_00914at 993.762 kb on - strand, within CCNA_00914at 993.762 kb on - strand, within CCNA_00914at 993.764 kb on - strandat 993.783 kb on + strandat 993.783 kb on + strandat 993.790 kb on + strandat 993.790 kb on + strandat 993.790 kb on + strandat 993.791 kb on - strandat 993.798 kb on - strandat 993.798 kb on - strandat 993.821 kb on + strandat 993.821 kb on + strandat 993.829 kb on - strandat 993.829 kb on - strandat 993.831 kb on - strandat 993.839 kb on - strandat 993.839 kb on - strandat 993.897 kb on - strandat 993.937 kb on + strandat 993.991 kb on - strandat 993.999 kb on - strandat 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.057 kb on - strand, within CCNA_00915at 994.062 kb on - strand, within CCNA_00915at 994.130 kb on + strand, within CCNA_00915at 994.135 kb on + strand, within CCNA_00915at 994.138 kb on - strand, within CCNA_00915at 994.143 kb on - strand, within CCNA_00915at 994.169 kb on + strand, within CCNA_00915at 994.188 kb on - strand, within CCNA_00915at 994.306 kb on - strand, within CCNA_00915at 994.370 kb on - strand, within CCNA_00915at 994.397 kb on - strand, within CCNA_00915at 994.411 kb on + strand, within CCNA_00915at 994.419 kb on - strand, within CCNA_00915at 994.419 kb on - strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.451 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.490 kb on - strand, within CCNA_00915at 994.505 kb on - strand, within CCNA_00915at 994.540 kb on + strand, within CCNA_00915at 994.542 kb on - strand, within CCNA_00915at 994.542 kb on - strand, within CCNA_00915at 994.571 kb on + strand, within CCNA_00915at 994.571 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.611 kb on - strand, within CCNA_00915at 994.611 kb on - strand, within CCNA_00915at 994.629 kb on + strand, within CCNA_00915at 994.636 kb on + strandat 994.637 kb on - strandat 994.646 kb on + strandat 994.649 kb on + strandat 994.666 kb on + strandat 994.718 kb on - strandat 994.730 kb on - strandat 994.766 kb on - strand, within CCNA_00916at 994.781 kb on + strand, within CCNA_00916at 994.789 kb on - strand, within CCNA_00916at 994.789 kb on - strand, within CCNA_00916at 994.814 kb on + strand, within CCNA_00916at 994.814 kb on + strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.849 kb on - strand, within CCNA_00916at 994.915 kb on + strand, within CCNA_00916at 994.918 kb on - strand, within CCNA_00916at 994.923 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.936 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.944 kb on + strand, within CCNA_00916at 994.944 kb on + strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.987 kb on - strandat 995.027 kb on - strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.035 kb on - strand, within CCNA_00917at 995.035 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.070 kb on + strand, within CCNA_00917at 995.113 kb on - strand, within CCNA_00917at 995.146 kb on + strand, within CCNA_00917at 995.146 kb on + strand, within CCNA_00917at 995.180 kb on + strand, within CCNA_00917at 995.339 kb on + strandat 995.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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992,962 + -0.5
993,007 - -1.4
993,007 - -0.4
993,012 - -1.6
993,023 - -0.4
993,041 + +0.1
993,044 - -0.4
993,059 - CCNA_00913 0.15 +1.0
993,085 + CCNA_00913 0.29 +0.2
993,093 - CCNA_00913 0.34 -0.4
993,093 - CCNA_00913 0.34 +0.4
993,093 - CCNA_00913 0.34 -1.1
993,133 - CCNA_00913 0.56 +1.0
993,138 - CCNA_00913 0.59 +1.9
993,138 - CCNA_00913 0.59 -0.8
993,146 + CCNA_00913 0.64 -1.2
993,173 - CCNA_00913 0.79 -1.8
993,175 - CCNA_00913 0.80 +0.3
993,206 + +0.1
993,218 - -0.0
993,241 + +2.5
993,323 - -0.9
993,327 - +0.9
993,346 - CCNA_00914 0.11 -0.6
993,366 + CCNA_00914 0.15 -2.2
993,374 - CCNA_00914 0.16 +1.2
993,374 - CCNA_00914 0.16 -0.1
993,448 + CCNA_00914 0.30 -1.9
993,455 - CCNA_00914 0.32 -0.3
993,456 - CCNA_00914 0.32 -0.1
993,474 + CCNA_00914 0.35 +1.2
993,474 + CCNA_00914 0.35 +0.4
993,474 + CCNA_00914 0.35 +1.1
993,474 + CCNA_00914 0.35 -0.2
993,474 + CCNA_00914 0.35 -0.9
993,482 - CCNA_00914 0.37 -0.2
993,500 - CCNA_00914 0.40 +0.6
993,515 - CCNA_00914 0.43 +0.3
993,527 - CCNA_00914 0.45 +0.4
993,533 + CCNA_00914 0.46 -0.5
993,551 - CCNA_00914 0.50 -1.2
993,555 + CCNA_00914 0.51 +0.6
993,558 + CCNA_00914 0.51 +2.4
993,607 + CCNA_00914 0.60 +1.9
993,610 - CCNA_00914 0.61 -0.4
993,610 - CCNA_00914 0.61 -0.0
993,617 + CCNA_00914 0.62 +0.4
993,627 + CCNA_00914 0.64 -1.0
993,627 + CCNA_00914 0.64 -1.3
993,627 + CCNA_00914 0.64 +0.0
993,627 + CCNA_00914 0.64 -0.1
993,636 + CCNA_00914 0.66 +0.2
993,646 + CCNA_00914 0.68 +0.7
993,704 - CCNA_00914 0.79 +0.9
993,718 + CCNA_00914 0.81 -1.2
993,723 + CCNA_00914 0.82 -1.3
993,723 + CCNA_00914 0.82 +1.8
993,723 + CCNA_00914 0.82 -0.8
993,723 + CCNA_00914 0.82 +2.2
993,723 + CCNA_00914 0.82 +0.3
993,723 + CCNA_00914 0.82 +0.6
993,725 - CCNA_00914 0.83 -1.6
993,731 - CCNA_00914 0.84 -1.0
993,754 + CCNA_00914 0.88 -0.1
993,762 - CCNA_00914 0.90 -0.7
993,762 - CCNA_00914 0.90 -0.6
993,764 - +1.0
993,783 + -1.4
993,783 + -0.8
993,790 + +0.4
993,790 + +1.7
993,790 + +0.0
993,791 - -0.5
993,798 - +0.6
993,798 - +1.7
993,821 + -1.0
993,821 + -1.0
993,829 - +1.7
993,829 - -1.3
993,831 - +1.0
993,839 - +2.3
993,839 - +2.5
993,897 - -1.3
993,937 + +0.4
993,991 - +1.2
993,999 - -1.1
994,054 + CCNA_00915 0.14 -1.3
994,054 + CCNA_00915 0.14 -0.3
994,054 + CCNA_00915 0.14 -2.9
994,057 - CCNA_00915 0.14 +0.3
994,062 - CCNA_00915 0.15 -0.6
994,130 + CCNA_00915 0.24 -0.8
994,135 + CCNA_00915 0.25 -2.3
994,138 - CCNA_00915 0.25 -1.1
994,143 - CCNA_00915 0.26 -1.1
994,169 + CCNA_00915 0.29 -3.0
994,188 - CCNA_00915 0.32 +0.1
994,306 - CCNA_00915 0.47 -1.2
994,370 - CCNA_00915 0.56 +2.2
994,397 - CCNA_00915 0.59 -0.5
994,411 + CCNA_00915 0.61 +1.4
994,419 - CCNA_00915 0.62 +2.7
994,419 - CCNA_00915 0.62 -0.8
994,450 + CCNA_00915 0.66 +0.1
994,450 + CCNA_00915 0.66 +2.4
994,450 + CCNA_00915 0.66 -0.2
994,450 + CCNA_00915 0.66 +0.7
994,450 + CCNA_00915 0.66 -0.1
994,450 + CCNA_00915 0.66 -0.0
994,451 - CCNA_00915 0.66 -1.1
994,458 - CCNA_00915 0.67 +0.4
994,458 - CCNA_00915 0.67 -0.6
994,458 - CCNA_00915 0.67 -1.1
994,458 - CCNA_00915 0.67 -0.2
994,458 - CCNA_00915 0.67 -0.5
994,490 - CCNA_00915 0.71 +0.2
994,505 - CCNA_00915 0.73 +0.2
994,540 + CCNA_00915 0.78 -0.2
994,542 - CCNA_00915 0.78 +0.4
994,542 - CCNA_00915 0.78 -1.2
994,571 + CCNA_00915 0.82 -1.4
994,571 + CCNA_00915 0.82 -0.7
994,603 + CCNA_00915 0.86 -0.1
994,603 + CCNA_00915 0.86 -0.7
994,603 + CCNA_00915 0.86 +1.4
994,611 - CCNA_00915 0.87 +0.4
994,611 - CCNA_00915 0.87 -0.6
994,629 + CCNA_00915 0.90 +0.3
994,636 + +0.8
994,637 - -0.1
994,646 + -0.4
994,649 + -1.3
994,666 + -0.1
994,718 - +1.7
994,730 - +0.1
994,766 - CCNA_00916 0.20 -1.4
994,781 + CCNA_00916 0.25 +0.4
994,789 - CCNA_00916 0.27 -0.1
994,789 - CCNA_00916 0.27 -0.7
994,814 + CCNA_00916 0.36 -1.2
994,814 + CCNA_00916 0.36 +0.2
994,822 - CCNA_00916 0.39 +0.8
994,822 - CCNA_00916 0.39 -2.3
994,822 - CCNA_00916 0.39 +0.1
994,849 - CCNA_00916 0.48 -2.7
994,915 + CCNA_00916 0.71 -0.4
994,918 - CCNA_00916 0.72 +1.0
994,923 + CCNA_00916 0.74 +1.7
994,933 + CCNA_00916 0.77 +0.3
994,933 + CCNA_00916 0.77 -1.5
994,933 + CCNA_00916 0.77 -1.1
994,936 - CCNA_00916 0.78 +0.8
994,941 - CCNA_00916 0.80 -0.5
994,941 - CCNA_00916 0.80 -0.8
994,941 - CCNA_00916 0.80 +1.1
994,944 + CCNA_00916 0.81 -0.1
994,944 + CCNA_00916 0.81 -1.4
994,952 - CCNA_00916 0.84 -0.9
994,952 - CCNA_00916 0.84 +0.2
994,952 - CCNA_00916 0.84 -0.1
994,952 - CCNA_00916 0.84 -2.1
994,952 - CCNA_00916 0.84 +0.9
994,987 - -1.2
995,027 - CCNA_00917 0.12 +1.3
995,028 + CCNA_00917 0.12 +0.9
995,028 + CCNA_00917 0.12 +0.0
995,028 + CCNA_00917 0.12 -0.1
995,028 + CCNA_00917 0.12 -0.1
995,028 + CCNA_00917 0.12 -1.6
995,028 + CCNA_00917 0.12 -0.4
995,035 - CCNA_00917 0.15 +2.4
995,035 - CCNA_00917 0.15 +1.5
995,036 - CCNA_00917 0.15 +1.2
995,036 - CCNA_00917 0.15 +0.8
995,036 - CCNA_00917 0.15 +0.2
995,036 - CCNA_00917 0.15 +0.7
995,036 - CCNA_00917 0.15 -2.3
995,036 - CCNA_00917 0.15 -0.0
995,036 - CCNA_00917 0.15 +0.9
995,070 + CCNA_00917 0.28 +1.7
995,113 - CCNA_00917 0.44 +2.4
995,146 + CCNA_00917 0.56 +1.4
995,146 + CCNA_00917 0.56 -0.9
995,180 + CCNA_00917 0.69 +1.4
995,339 + +1.4
995,339 + +0.6

Or see this region's nucleotide sequence