Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00880 and CCNA_00881 overlap by 4 nucleotides CCNA_00881 and CCNA_00882 are separated by 155 nucleotides CCNA_00882 and CCNA_00883 are separated by 191 nucleotides CCNA_00883 and CCNA_00884 are separated by 2 nucleotides
CCNA_00880: CCNA_00880 - hypothetical protein, at 959,391 to 960,950
_00880
CCNA_00881: CCNA_00881 - ABC transporter ATP-binding protein, at 960,947 to 961,699
_00881
CCNA_00882: CCNA_00882 - hypothetical protein, at 961,855 to 962,853
_00882
CCNA_00883: CCNA_00883 - 3-demethylubiquinone 3-methyltransferase, at 963,045 to 963,803
_00883
CCNA_00884: CCNA_00884 - VapC-like PIN domain ribonuclease toxin, at 963,806 to 964,192
_00884
Position (kb) 961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 960.864 kb on + strand at 960.888 kb on + strand at 960.946 kb on + strand at 960.952 kb on + strand at 960.963 kb on + strand at 961.019 kb on + strand at 961.086 kb on + strand, within CCNA_00881 at 961.086 kb on + strand, within CCNA_00881 at 961.094 kb on - strand, within CCNA_00881 at 961.116 kb on - strand, within CCNA_00881 at 961.151 kb on + strand, within CCNA_00881 at 961.164 kb on + strand, within CCNA_00881 at 961.190 kb on + strand, within CCNA_00881 at 961.199 kb on + strand, within CCNA_00881 at 961.207 kb on - strand, within CCNA_00881 at 961.207 kb on - strand, within CCNA_00881 at 961.207 kb on - strand, within CCNA_00881 at 961.208 kb on - strand, within CCNA_00881 at 961.217 kb on + strand, within CCNA_00881 at 961.233 kb on - strand, within CCNA_00881 at 961.246 kb on - strand, within CCNA_00881 at 961.260 kb on + strand, within CCNA_00881 at 961.275 kb on - strand, within CCNA_00881 at 961.301 kb on - strand, within CCNA_00881 at 961.318 kb on + strand, within CCNA_00881 at 961.326 kb on - strand, within CCNA_00881 at 961.328 kb on + strand, within CCNA_00881 at 961.337 kb on - strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.365 kb on + strand, within CCNA_00881 at 961.403 kb on + strand, within CCNA_00881 at 961.451 kb on + strand, within CCNA_00881 at 961.462 kb on - strand, within CCNA_00881 at 961.529 kb on + strand, within CCNA_00881 at 961.529 kb on + strand, within CCNA_00881 at 961.536 kb on - strand, within CCNA_00881 at 961.554 kb on + strand, within CCNA_00881 at 961.569 kb on + strand, within CCNA_00881 at 961.574 kb on + strand, within CCNA_00881 at 961.590 kb on + strand at 961.595 kb on + strand, within CCNA_00881 at 961.598 kb on - strand, within CCNA_00881 at 961.603 kb on - strand, within CCNA_00881 at 961.618 kb on + strand, within CCNA_00881 at 961.646 kb on - strand at 961.646 kb on - strand at 961.646 kb on - strand at 961.646 kb on - strand at 961.658 kb on - strand at 961.677 kb on - strand at 961.682 kb on + strand at 961.690 kb on - strand at 961.702 kb on - strand at 961.714 kb on - strand at 961.733 kb on - strand at 961.743 kb on + strand at 961.828 kb on - strand at 961.848 kb on - strand at 961.853 kb on + strand at 961.861 kb on - strand at 961.861 kb on - strand at 961.879 kb on + strand at 961.889 kb on + strand at 961.903 kb on - strand at 961.942 kb on - strand at 961.957 kb on + strand, within CCNA_00882 at 962.002 kb on - strand, within CCNA_00882 at 962.004 kb on + strand, within CCNA_00882 at 962.006 kb on + strand, within CCNA_00882 at 962.028 kb on - strand, within CCNA_00882 at 962.036 kb on + strand, within CCNA_00882 at 962.048 kb on + strand, within CCNA_00882 at 962.054 kb on - strand, within CCNA_00882 at 962.089 kb on - strand, within CCNA_00882 at 962.094 kb on - strand, within CCNA_00882 at 962.095 kb on + strand, within CCNA_00882 at 962.095 kb on + strand, within CCNA_00882 at 962.101 kb on - strand, within CCNA_00882 at 962.103 kb on - strand, within CCNA_00882 at 962.110 kb on - strand, within CCNA_00882 at 962.153 kb on + strand, within CCNA_00882 at 962.153 kb on + strand, within CCNA_00882 at 962.161 kb on - strand, within CCNA_00882 at 962.251 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.306 kb on - strand, within CCNA_00882 at 962.323 kb on + strand, within CCNA_00882 at 962.323 kb on + strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.344 kb on + strand, within CCNA_00882 at 962.344 kb on + strand, within CCNA_00882 at 962.363 kb on + strand, within CCNA_00882 at 962.375 kb on + strand, within CCNA_00882 at 962.376 kb on + strand, within CCNA_00882 at 962.376 kb on + strand, within CCNA_00882 at 962.428 kb on - strand, within CCNA_00882 at 962.445 kb on + strand, within CCNA_00882 at 962.463 kb on - strand, within CCNA_00882 at 962.468 kb on + strand, within CCNA_00882 at 962.481 kb on + strand, within CCNA_00882 at 962.481 kb on + strand, within CCNA_00882 at 962.489 kb on - strand, within CCNA_00882 at 962.489 kb on - strand, within CCNA_00882 at 962.509 kb on - strand, within CCNA_00882 at 962.522 kb on - strand, within CCNA_00882 at 962.553 kb on - strand, within CCNA_00882 at 962.553 kb on - strand, within CCNA_00882 at 962.560 kb on + strand, within CCNA_00882 at 962.576 kb on + strand, within CCNA_00882 at 962.644 kb on + strand, within CCNA_00882 at 962.665 kb on + strand, within CCNA_00882 at 962.680 kb on + strand, within CCNA_00882 at 962.688 kb on - strand, within CCNA_00882 at 962.733 kb on + strand, within CCNA_00882 at 962.742 kb on - strand, within CCNA_00882 at 962.751 kb on + strand, within CCNA_00882 at 962.759 kb on - strand at 962.759 kb on - strand at 962.759 kb on - strand at 962.779 kb on - strand at 962.779 kb on - strand at 962.781 kb on + strand at 962.789 kb on - strand at 962.796 kb on - strand at 962.804 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.817 kb on - strand at 962.817 kb on - strand at 962.819 kb on + strand at 962.822 kb on - strand at 962.850 kb on + strand at 962.850 kb on + strand at 962.858 kb on - strand at 962.863 kb on - strand at 962.865 kb on + strand at 962.873 kb on - strand at 962.947 kb on + strand at 962.949 kb on - strand at 962.957 kb on + strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.977 kb on - strand at 962.989 kb on - strand at 962.991 kb on + strand at 962.999 kb on - strand at 963.041 kb on - strand at 963.041 kb on - strand at 963.046 kb on - strand at 963.051 kb on - strand at 963.051 kb on - strand at 963.051 kb on - strand at 963.760 kb on + strand at 963.769 kb on + strand at 963.799 kb on + strand at 963.807 kb on - strand at 963.831 kb on + strand at 963.834 kb on - strand at 963.836 kb on + strand at 963.836 kb on + strand at 963.844 kb on - strand at 963.844 kb on - strand at 963.844 kb on - strand at 963.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 960,864 + +0.3 960,888 + +0.0 960,946 + -0.8 960,952 + +0.6 960,963 + -0.7 961,019 + -1.2 961,086 + CCNA_00881 0.18 +1.2 961,086 + CCNA_00881 0.18 +0.7 961,094 - CCNA_00881 0.20 -0.6 961,116 - CCNA_00881 0.22 +1.6 961,151 + CCNA_00881 0.27 +0.6 961,164 + CCNA_00881 0.29 -0.5 961,190 + CCNA_00881 0.32 +0.7 961,199 + CCNA_00881 0.33 +0.0 961,207 - CCNA_00881 0.35 -0.9 961,207 - CCNA_00881 0.35 -0.8 961,207 - CCNA_00881 0.35 +0.4 961,208 - CCNA_00881 0.35 -2.8 961,217 + CCNA_00881 0.36 -2.0 961,233 - CCNA_00881 0.38 -0.9 961,246 - CCNA_00881 0.40 +0.8 961,260 + CCNA_00881 0.42 -0.8 961,275 - CCNA_00881 0.44 -0.9 961,301 - CCNA_00881 0.47 -1.8 961,318 + CCNA_00881 0.49 -1.0 961,326 - CCNA_00881 0.50 +0.0 961,328 + CCNA_00881 0.51 -1.0 961,337 - CCNA_00881 0.52 -0.2 961,344 + CCNA_00881 0.53 +0.0 961,344 + CCNA_00881 0.53 -0.8 961,344 + CCNA_00881 0.53 -0.2 961,344 + CCNA_00881 0.53 +1.4 961,344 + CCNA_00881 0.53 +1.1 961,352 - CCNA_00881 0.54 +0.0 961,352 - CCNA_00881 0.54 -1.1 961,352 - CCNA_00881 0.54 -1.5 961,352 - CCNA_00881 0.54 -0.2 961,352 - CCNA_00881 0.54 +0.4 961,352 - CCNA_00881 0.54 +1.2 961,352 - CCNA_00881 0.54 -1.5 961,352 - CCNA_00881 0.54 -0.5 961,365 + CCNA_00881 0.56 +0.0 961,403 + CCNA_00881 0.61 +0.3 961,451 + CCNA_00881 0.67 -2.2 961,462 - CCNA_00881 0.68 +0.3 961,529 + CCNA_00881 0.77 +0.0 961,529 + CCNA_00881 0.77 -1.0 961,536 - CCNA_00881 0.78 +0.8 961,554 + CCNA_00881 0.81 +0.8 961,569 + CCNA_00881 0.83 +1.6 961,574 + CCNA_00881 0.83 -1.1 961,590 + +3.4 961,595 + CCNA_00881 0.86 +0.4 961,598 - CCNA_00881 0.86 -1.9 961,603 - CCNA_00881 0.87 -0.8 961,618 + CCNA_00881 0.89 +0.2 961,646 - -0.8 961,646 - -0.7 961,646 - -0.5 961,646 - +0.7 961,658 - -0.5 961,677 - +2.4 961,682 + +1.8 961,690 - -0.5 961,702 - -2.9 961,714 - +2.9 961,733 - +2.2 961,743 + -0.9 961,828 - +0.0 961,848 - +0.3 961,853 + +1.4 961,861 - -1.2 961,861 - -0.6 961,879 + -1.7 961,889 + +1.6 961,903 - +0.1 961,942 - -2.1 961,957 + CCNA_00882 0.10 -1.8 962,002 - CCNA_00882 0.15 -0.4 962,004 + CCNA_00882 0.15 -1.7 962,006 + CCNA_00882 0.15 +2.0 962,028 - CCNA_00882 0.17 -0.1 962,036 + CCNA_00882 0.18 -1.8 962,048 + CCNA_00882 0.19 +0.8 962,054 - CCNA_00882 0.20 -0.7 962,089 - CCNA_00882 0.23 +0.3 962,094 - CCNA_00882 0.24 -2.4 962,095 + CCNA_00882 0.24 -0.6 962,095 + CCNA_00882 0.24 -3.0 962,101 - CCNA_00882 0.25 -0.7 962,103 - CCNA_00882 0.25 -1.4 962,110 - CCNA_00882 0.26 -0.9 962,153 + CCNA_00882 0.30 +0.0 962,153 + CCNA_00882 0.30 +1.4 962,161 - CCNA_00882 0.31 -1.9 962,251 + CCNA_00882 0.40 +0.2 962,296 + CCNA_00882 0.44 -1.8 962,296 + CCNA_00882 0.44 -0.5 962,296 + CCNA_00882 0.44 +1.0 962,296 + CCNA_00882 0.44 +0.0 962,306 - CCNA_00882 0.45 -2.0 962,323 + CCNA_00882 0.47 -1.3 962,323 + CCNA_00882 0.47 -0.1 962,331 - CCNA_00882 0.48 +0.5 962,331 - CCNA_00882 0.48 -0.2 962,331 - CCNA_00882 0.48 -1.2 962,331 - CCNA_00882 0.48 -0.6 962,344 + CCNA_00882 0.49 +0.8 962,344 + CCNA_00882 0.49 +1.0 962,363 + CCNA_00882 0.51 -0.2 962,375 + CCNA_00882 0.52 -1.0 962,376 + CCNA_00882 0.52 -1.4 962,376 + CCNA_00882 0.52 +0.3 962,428 - CCNA_00882 0.57 -0.4 962,445 + CCNA_00882 0.59 +0.4 962,463 - CCNA_00882 0.61 +0.8 962,468 + CCNA_00882 0.61 +0.1 962,481 + CCNA_00882 0.63 -0.7 962,481 + CCNA_00882 0.63 -0.8 962,489 - CCNA_00882 0.63 +1.4 962,489 - CCNA_00882 0.63 -0.8 962,509 - CCNA_00882 0.65 -1.1 962,522 - CCNA_00882 0.67 -0.8 962,553 - CCNA_00882 0.70 -0.2 962,553 - CCNA_00882 0.70 +3.0 962,560 + CCNA_00882 0.71 +0.4 962,576 + CCNA_00882 0.72 +0.6 962,644 + CCNA_00882 0.79 +0.3 962,665 + CCNA_00882 0.81 +0.8 962,680 + CCNA_00882 0.83 +0.6 962,688 - CCNA_00882 0.83 +0.6 962,733 + CCNA_00882 0.88 -0.5 962,742 - CCNA_00882 0.89 +0.0 962,751 + CCNA_00882 0.90 +0.0 962,759 - -0.0 962,759 - +0.8 962,759 - +0.3 962,779 - +1.6 962,779 - +0.8 962,781 + -1.0 962,789 - +2.4 962,796 - -1.6 962,804 + -1.6 962,809 + +0.4 962,809 + -1.4 962,809 + -0.4 962,809 + +0.4 962,809 + +0.4 962,817 - -1.9 962,817 - +2.4 962,819 + +0.3 962,822 - +2.0 962,850 + -0.4 962,850 + -2.5 962,858 - +1.2 962,863 - -1.7 962,865 + +0.3 962,873 - -0.4 962,947 + -0.4 962,949 - -0.7 962,957 + +2.8 962,965 - +1.4 962,965 - -0.7 962,965 - +0.6 962,965 - +0.7 962,965 - +0.0 962,965 - -0.8 962,977 - +0.4 962,989 - +0.5 962,991 + +0.4 962,999 - +0.3 963,041 - -0.4 963,041 - +0.7 963,046 - +1.2 963,051 - +0.8 963,051 - +0.8 963,051 - +1.1 963,760 + +1.7 963,769 + -1.3 963,799 + +2.7 963,807 - +0.0 963,831 + +0.8 963,834 - +0.4 963,836 + +2.0 963,836 + +0.4 963,844 - -0.8 963,844 - -1.3 963,844 - +0.7 963,844 - +2.4
Or see this region's nucleotide sequence