Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00810 and CCNA_00811 are separated by 31 nucleotides CCNA_00811 and CCNA_00812 are separated by 221 nucleotides CCNA_00812 and CCNA_00813 are separated by 128 nucleotides
CCNA_00810: CCNA_00810 - acetyl esterase, at 873,744 to 874,886
_00810
CCNA_00811: CCNA_00811 - TetR-family transcriptional regulator, at 874,918 to 875,553
_00811
CCNA_00812: CCNA_00812 - hypothetical protein, at 875,775 to 876,026
_00812
CCNA_00813: CCNA_00813 - flavin-binding monooxygenase-related protein, at 876,155 to 877,531
_00813
Position (kb) 874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 873.918 kb on - strand, within CCNA_00810 at 873.940 kb on - strand, within CCNA_00810 at 874.043 kb on - strand, within CCNA_00810 at 874.061 kb on - strand, within CCNA_00810 at 874.061 kb on - strand, within CCNA_00810 at 874.068 kb on + strand, within CCNA_00810 at 874.116 kb on - strand, within CCNA_00810 at 874.127 kb on - strand, within CCNA_00810 at 874.132 kb on + strand, within CCNA_00810 at 874.137 kb on - strand, within CCNA_00810 at 874.145 kb on - strand, within CCNA_00810 at 874.145 kb on - strand, within CCNA_00810 at 874.151 kb on - strand, within CCNA_00810 at 874.151 kb on - strand, within CCNA_00810 at 874.161 kb on + strand, within CCNA_00810 at 874.168 kb on + strand, within CCNA_00810 at 874.267 kb on + strand, within CCNA_00810 at 874.267 kb on + strand, within CCNA_00810 at 874.269 kb on + strand, within CCNA_00810 at 874.269 kb on + strand, within CCNA_00810 at 874.305 kb on + strand, within CCNA_00810 at 874.344 kb on + strand, within CCNA_00810 at 874.359 kb on - strand, within CCNA_00810 at 874.364 kb on - strand, within CCNA_00810 at 874.385 kb on + strand, within CCNA_00810 at 874.393 kb on - strand, within CCNA_00810 at 874.397 kb on + strand, within CCNA_00810 at 874.408 kb on + strand, within CCNA_00810 at 874.443 kb on + strand, within CCNA_00810 at 874.451 kb on - strand, within CCNA_00810 at 874.462 kb on + strand, within CCNA_00810 at 874.473 kb on + strand, within CCNA_00810 at 874.481 kb on - strand, within CCNA_00810 at 874.492 kb on - strand, within CCNA_00810 at 874.532 kb on + strand, within CCNA_00810 at 874.583 kb on - strand, within CCNA_00810 at 874.673 kb on + strand, within CCNA_00810 at 874.673 kb on + strand, within CCNA_00810 at 874.673 kb on + strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.687 kb on - strand, within CCNA_00810 at 874.727 kb on + strand, within CCNA_00810 at 874.735 kb on - strand, within CCNA_00810 at 874.737 kb on + strand, within CCNA_00810 at 874.744 kb on + strand, within CCNA_00810 at 874.746 kb on - strand, within CCNA_00810 at 874.752 kb on - strand, within CCNA_00810 at 874.775 kb on - strand at 874.805 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.842 kb on - strand at 874.862 kb on + strand at 874.884 kb on + strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.927 kb on + strand at 874.956 kb on + strand at 874.966 kb on + strand at 875.068 kb on + strand, within CCNA_00811 at 875.097 kb on - strand, within CCNA_00811 at 875.101 kb on + strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.122 kb on + strand, within CCNA_00811 at 875.128 kb on - strand, within CCNA_00811 at 875.137 kb on - strand, within CCNA_00811 at 875.150 kb on + strand, within CCNA_00811 at 875.193 kb on - strand, within CCNA_00811 at 875.230 kb on + strand, within CCNA_00811 at 875.238 kb on - strand, within CCNA_00811 at 875.243 kb on - strand, within CCNA_00811 at 875.279 kb on - strand, within CCNA_00811 at 875.281 kb on - strand, within CCNA_00811 at 875.372 kb on - strand, within CCNA_00811 at 875.380 kb on + strand, within CCNA_00811 at 875.380 kb on + strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.410 kb on + strand, within CCNA_00811 at 875.412 kb on - strand, within CCNA_00811 at 875.412 kb on - strand, within CCNA_00811 at 875.422 kb on + strand, within CCNA_00811 at 875.428 kb on + strand, within CCNA_00811 at 875.491 kb on - strand at 875.501 kb on - strand at 875.504 kb on + strand at 875.516 kb on - strand at 875.519 kb on + strand at 875.526 kb on - strand at 875.608 kb on + strand at 875.611 kb on - strand at 875.685 kb on - strand at 875.690 kb on + strand at 875.690 kb on + strand at 875.691 kb on + strand at 875.692 kb on - strand at 875.698 kb on - strand at 875.715 kb on + strand at 875.715 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.723 kb on - strand at 875.725 kb on - strand at 875.725 kb on - strand at 875.725 kb on - strand at 875.731 kb on - strand at 875.760 kb on + strand at 875.768 kb on - strand at 875.768 kb on - strand at 875.768 kb on - strand at 875.802 kb on + strand, within CCNA_00812 at 875.810 kb on - strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.846 kb on + strand, within CCNA_00812 at 875.846 kb on + strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.854 kb on - strand, within CCNA_00812 at 875.870 kb on + strand, within CCNA_00812 at 875.872 kb on - strand, within CCNA_00812 at 875.878 kb on - strand, within CCNA_00812 at 875.878 kb on - strand, within CCNA_00812 at 875.901 kb on + strand, within CCNA_00812 at 875.901 kb on + strand, within CCNA_00812 at 875.912 kb on + strand, within CCNA_00812 at 875.940 kb on - strand, within CCNA_00812 at 875.987 kb on + strand, within CCNA_00812 at 875.995 kb on - strand, within CCNA_00812 at 875.995 kb on - strand, within CCNA_00812 at 876.015 kb on + strand at 876.054 kb on - strand at 876.063 kb on + strand at 876.068 kb on + strand at 876.071 kb on - strand at 876.071 kb on - strand at 876.075 kb on + strand at 876.101 kb on - strand at 876.115 kb on + strand at 876.120 kb on + strand at 876.123 kb on - strand at 876.123 kb on - strand at 876.125 kb on + strand at 876.135 kb on + strand at 876.171 kb on + strand at 876.178 kb on - strand at 876.179 kb on - strand at 876.195 kb on + strand at 876.210 kb on + strand at 876.241 kb on - strand at 876.269 kb on - strand at 876.321 kb on + strand, within CCNA_00813 at 876.368 kb on + strand, within CCNA_00813 at 876.370 kb on + strand, within CCNA_00813 at 876.376 kb on - strand, within CCNA_00813 at 876.376 kb on - strand, within CCNA_00813 at 876.384 kb on + strand, within CCNA_00813 at 876.448 kb on - strand, within CCNA_00813 at 876.448 kb on - strand, within CCNA_00813 at 876.450 kb on + strand, within CCNA_00813 at 876.452 kb on - strand, within CCNA_00813 at 876.461 kb on + strand, within CCNA_00813 at 876.465 kb on + strand, within CCNA_00813 at 876.483 kb on - strand, within CCNA_00813 at 876.484 kb on - strand, within CCNA_00813 at 876.511 kb on + strand, within CCNA_00813 at 876.536 kb on + strand, within CCNA_00813 at 876.536 kb on - strand, within CCNA_00813 at 876.549 kb on - strand, within CCNA_00813
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 873,918 - CCNA_00810 0.15 +2.1 873,940 - CCNA_00810 0.17 -0.8 874,043 - CCNA_00810 0.26 -0.8 874,061 - CCNA_00810 0.28 -0.2 874,061 - CCNA_00810 0.28 +1.8 874,068 + CCNA_00810 0.28 -0.3 874,116 - CCNA_00810 0.33 +0.4 874,127 - CCNA_00810 0.34 +0.0 874,132 + CCNA_00810 0.34 -0.1 874,137 - CCNA_00810 0.34 -2.3 874,145 - CCNA_00810 0.35 +2.6 874,145 - CCNA_00810 0.35 -0.5 874,151 - CCNA_00810 0.36 -0.7 874,151 - CCNA_00810 0.36 -0.5 874,161 + CCNA_00810 0.36 +0.5 874,168 + CCNA_00810 0.37 -0.9 874,267 + CCNA_00810 0.46 -0.5 874,267 + CCNA_00810 0.46 +0.7 874,269 + CCNA_00810 0.46 +0.5 874,269 + CCNA_00810 0.46 -1.5 874,305 + CCNA_00810 0.49 -0.1 874,344 + CCNA_00810 0.52 +1.4 874,359 - CCNA_00810 0.54 +0.6 874,364 - CCNA_00810 0.54 -1.5 874,385 + CCNA_00810 0.56 -0.7 874,393 - CCNA_00810 0.57 +0.8 874,397 + CCNA_00810 0.57 +0.7 874,408 + CCNA_00810 0.58 -0.8 874,443 + CCNA_00810 0.61 +0.2 874,451 - CCNA_00810 0.62 -0.1 874,462 + CCNA_00810 0.63 +0.4 874,473 + CCNA_00810 0.64 -0.7 874,481 - CCNA_00810 0.64 +0.6 874,492 - CCNA_00810 0.65 -2.0 874,532 + CCNA_00810 0.69 -0.4 874,583 - CCNA_00810 0.73 -0.3 874,673 + CCNA_00810 0.81 -0.8 874,673 + CCNA_00810 0.81 -0.4 874,673 + CCNA_00810 0.81 -0.8 874,681 - CCNA_00810 0.82 +0.3 874,681 - CCNA_00810 0.82 +1.4 874,681 - CCNA_00810 0.82 -1.0 874,681 - CCNA_00810 0.82 +0.5 874,681 - CCNA_00810 0.82 +0.4 874,687 - CCNA_00810 0.83 +0.5 874,727 + CCNA_00810 0.86 +1.0 874,735 - CCNA_00810 0.87 +0.7 874,737 + CCNA_00810 0.87 -0.3 874,744 + CCNA_00810 0.87 -0.6 874,746 - CCNA_00810 0.88 -1.1 874,752 - CCNA_00810 0.88 -0.3 874,775 - -1.6 874,805 + +1.0 874,824 + -1.2 874,824 + +0.4 874,824 + -2.0 874,824 + -1.9 874,832 - -1.0 874,832 - +1.0 874,832 - +0.8 874,832 - -0.3 874,832 - -0.6 874,832 - -1.4 874,832 - +3.6 874,832 - -0.8 874,842 - +0.3 874,862 + -0.0 874,884 + +0.3 874,924 - +0.6 874,924 - +1.0 874,924 - +1.5 874,924 - -0.7 874,924 - +2.2 874,927 + -0.2 874,956 + +0.8 874,966 + -0.1 875,068 + CCNA_00811 0.24 +0.7 875,097 - CCNA_00811 0.28 +0.4 875,101 + CCNA_00811 0.29 +0.6 875,109 - CCNA_00811 0.30 +3.4 875,109 - CCNA_00811 0.30 +1.0 875,109 - CCNA_00811 0.30 +0.9 875,109 - CCNA_00811 0.30 +1.2 875,122 + CCNA_00811 0.32 -0.4 875,128 - CCNA_00811 0.33 +1.4 875,137 - CCNA_00811 0.34 +0.9 875,150 + CCNA_00811 0.36 +1.0 875,193 - CCNA_00811 0.43 +1.6 875,230 + CCNA_00811 0.49 -0.0 875,238 - CCNA_00811 0.50 +0.5 875,243 - CCNA_00811 0.51 +1.0 875,279 - CCNA_00811 0.57 +2.9 875,281 - CCNA_00811 0.57 +1.6 875,372 - CCNA_00811 0.71 +1.5 875,380 + CCNA_00811 0.73 +2.0 875,380 + CCNA_00811 0.73 -0.2 875,388 - CCNA_00811 0.74 +1.8 875,388 - CCNA_00811 0.74 +0.4 875,388 - CCNA_00811 0.74 +0.2 875,410 + CCNA_00811 0.77 +0.4 875,412 - CCNA_00811 0.78 -0.9 875,412 - CCNA_00811 0.78 -0.9 875,422 + CCNA_00811 0.79 -0.6 875,428 + CCNA_00811 0.80 +0.6 875,491 - +1.7 875,501 - +1.5 875,504 + -0.0 875,516 - -0.0 875,519 + -0.9 875,526 - +0.6 875,608 + +1.3 875,611 - +1.6 875,685 - +0.2 875,690 + +2.7 875,690 + -1.1 875,691 + -1.5 875,692 - -0.9 875,698 - +0.5 875,715 + -1.0 875,715 + -0.8 875,717 + -0.0 875,717 + +0.5 875,717 + -1.1 875,717 + -0.1 875,717 + -2.5 875,723 - +1.3 875,725 - +0.3 875,725 - -0.9 875,725 - -0.5 875,731 - -0.2 875,760 + +1.6 875,768 - -0.7 875,768 - -0.5 875,768 - +0.8 875,802 + CCNA_00812 0.11 +0.5 875,810 - CCNA_00812 0.14 +0.1 875,841 + CCNA_00812 0.26 -0.4 875,841 + CCNA_00812 0.26 -0.2 875,841 + CCNA_00812 0.26 +2.2 875,841 + CCNA_00812 0.26 -0.9 875,841 + CCNA_00812 0.26 -0.9 875,841 + CCNA_00812 0.26 -0.3 875,841 + CCNA_00812 0.26 +1.5 875,841 + CCNA_00812 0.26 -0.9 875,841 + CCNA_00812 0.26 +0.3 875,841 + CCNA_00812 0.26 +0.6 875,841 + CCNA_00812 0.26 -0.5 875,841 + CCNA_00812 0.26 +1.8 875,841 + CCNA_00812 0.26 +1.3 875,841 + CCNA_00812 0.26 +1.3 875,841 + CCNA_00812 0.26 -1.5 875,846 + CCNA_00812 0.28 -0.1 875,846 + CCNA_00812 0.28 -0.0 875,849 - CCNA_00812 0.29 -2.7 875,849 - CCNA_00812 0.29 +1.6 875,849 - CCNA_00812 0.29 -1.0 875,849 - CCNA_00812 0.29 +0.5 875,849 - CCNA_00812 0.29 -0.1 875,849 - CCNA_00812 0.29 -0.7 875,849 - CCNA_00812 0.29 +0.5 875,849 - CCNA_00812 0.29 -0.9 875,849 - CCNA_00812 0.29 -0.3 875,849 - CCNA_00812 0.29 -0.8 875,849 - CCNA_00812 0.29 +2.0 875,849 - CCNA_00812 0.29 +0.8 875,849 - CCNA_00812 0.29 +0.2 875,849 - CCNA_00812 0.29 -1.5 875,849 - CCNA_00812 0.29 -2.0 875,849 - CCNA_00812 0.29 +0.2 875,854 - CCNA_00812 0.31 -1.2 875,870 + CCNA_00812 0.38 -0.4 875,872 - CCNA_00812 0.38 -0.4 875,878 - CCNA_00812 0.41 +1.0 875,878 - CCNA_00812 0.41 +0.5 875,901 + CCNA_00812 0.50 -0.5 875,901 + CCNA_00812 0.50 -1.1 875,912 + CCNA_00812 0.54 -0.7 875,940 - CCNA_00812 0.65 -1.4 875,987 + CCNA_00812 0.84 +1.6 875,995 - CCNA_00812 0.87 -0.7 875,995 - CCNA_00812 0.87 +1.0 876,015 + -0.2 876,054 - +1.3 876,063 + -0.1 876,068 + -0.5 876,071 - -0.0 876,071 - +1.2 876,075 + +0.6 876,101 - -0.9 876,115 + -1.0 876,120 + -0.1 876,123 - +1.2 876,123 - +0.9 876,125 + -2.2 876,135 + -1.3 876,171 + +0.2 876,178 - +1.1 876,179 - +0.3 876,195 + -0.1 876,210 + +0.1 876,241 - -0.8 876,269 - +0.8 876,321 + CCNA_00813 0.12 +0.6 876,368 + CCNA_00813 0.15 -0.8 876,370 + CCNA_00813 0.16 -0.2 876,376 - CCNA_00813 0.16 +0.1 876,376 - CCNA_00813 0.16 -1.2 876,384 + CCNA_00813 0.17 -2.3 876,448 - CCNA_00813 0.21 -1.1 876,448 - CCNA_00813 0.21 -1.8 876,450 + CCNA_00813 0.21 +1.0 876,452 - CCNA_00813 0.22 +0.7 876,461 + CCNA_00813 0.22 +1.3 876,465 + CCNA_00813 0.23 +0.8 876,483 - CCNA_00813 0.24 +2.6 876,484 - CCNA_00813 0.24 +0.1 876,511 + CCNA_00813 0.26 -0.1 876,536 + CCNA_00813 0.28 +0.1 876,536 - CCNA_00813 0.28 -1.9 876,549 - CCNA_00813 0.29 +0.1
Or see this region's nucleotide sequence