Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00764 and CCNA_00765 are separated by 255 nucleotides CCNA_00765 and CCNA_00766 are separated by 158 nucleotides CCNA_00766 and CCNA_00767 are separated by 37 nucleotides
CCNA_00764: CCNA_00764 - electron transfer flavoprotein beta subunit, at 822,151 to 822,897
_00764
CCNA_00765: CCNA_00765 - hypothetical protein, at 823,153 to 823,443
_00765
CCNA_00766: CCNA_00766 - cobalamin adenosyltransferase family protein, at 823,602 to 824,180
_00766
CCNA_00767: CCNA_00767 - hypothetical protein, at 824,218 to 824,421
_00767
Position (kb) 823
824 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 822.912 kb on - strand at 822.917 kb on - strand at 822.919 kb on - strand at 822.995 kb on - strand at 823.047 kb on + strand at 823.048 kb on + strand at 823.056 kb on - strand at 823.071 kb on + strand at 823.071 kb on + strand at 823.089 kb on + strand at 823.107 kb on + strand at 823.107 kb on + strand at 823.107 kb on + strand at 823.114 kb on + strand at 823.115 kb on - strand at 823.122 kb on - strand at 823.144 kb on + strand at 823.145 kb on + strand at 823.158 kb on - strand at 823.163 kb on + strand at 823.184 kb on - strand, within CCNA_00765 at 823.195 kb on - strand, within CCNA_00765 at 823.207 kb on - strand, within CCNA_00765 at 823.214 kb on - strand, within CCNA_00765 at 823.229 kb on + strand, within CCNA_00765 at 823.279 kb on + strand, within CCNA_00765 at 823.353 kb on + strand, within CCNA_00765 at 823.353 kb on + strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.368 kb on + strand, within CCNA_00765 at 823.368 kb on + strand, within CCNA_00765 at 823.395 kb on - strand, within CCNA_00765 at 823.449 kb on + strand at 823.457 kb on - strand at 823.458 kb on + strand at 823.477 kb on + strand at 823.505 kb on + strand at 823.505 kb on + strand at 823.505 kb on - strand at 823.513 kb on - strand at 823.513 kb on - strand at 823.513 kb on - strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.536 kb on + strand at 823.536 kb on + strand at 823.537 kb on - strand at 823.539 kb on - strand at 823.560 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.575 kb on + strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.583 kb on - strand at 823.597 kb on + strand at 823.597 kb on + strand at 823.618 kb on + strand at 823.618 kb on + strand at 823.743 kb on - strand, within CCNA_00766 at 823.743 kb on - strand, within CCNA_00766 at 823.746 kb on + strand, within CCNA_00766 at 823.754 kb on - strand, within CCNA_00766 at 823.754 kb on - strand, within CCNA_00766 at 823.770 kb on + strand, within CCNA_00766 at 823.778 kb on - strand, within CCNA_00766 at 823.790 kb on + strand, within CCNA_00766 at 823.791 kb on + strand, within CCNA_00766 at 823.791 kb on + strand, within CCNA_00766 at 823.804 kb on - strand, within CCNA_00766 at 823.824 kb on - strand, within CCNA_00766 at 823.831 kb on + strand, within CCNA_00766 at 823.836 kb on + strand, within CCNA_00766 at 823.841 kb on + strand, within CCNA_00766 at 823.844 kb on - strand, within CCNA_00766 at 823.863 kb on - strand, within CCNA_00766 at 823.904 kb on - strand, within CCNA_00766 at 823.935 kb on - strand, within CCNA_00766 at 823.935 kb on - strand, within CCNA_00766 at 823.940 kb on + strand, within CCNA_00766 at 823.945 kb on + strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.950 kb on + strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 824.009 kb on + strand, within CCNA_00766 at 824.028 kb on + strand, within CCNA_00766 at 824.037 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.091 kb on + strand, within CCNA_00766 at 824.100 kb on + strand, within CCNA_00766 at 824.111 kb on - strand, within CCNA_00766 at 824.163 kb on - strand at 824.223 kb on - strand at 824.267 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.368 kb on + strand, within CCNA_00767 at 824.376 kb on - strand, within CCNA_00767 at 824.410 kb on + strand at 824.412 kb on + strand at 824.412 kb on + strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.424 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.437 kb on - strand at 824.437 kb on - strand at 824.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 822,912 - +2.0 822,917 - +1.8 822,919 - -0.5 822,995 - +0.7 823,047 + +0.2 823,048 + -0.0 823,056 - -1.0 823,071 + -0.7 823,071 + -0.5 823,089 + +2.3 823,107 + +2.4 823,107 + +0.7 823,107 + +0.6 823,114 + +0.1 823,115 - -0.1 823,122 - -0.3 823,144 + +0.5 823,145 + +2.0 823,158 - +1.4 823,163 + +0.2 823,184 - CCNA_00765 0.11 +2.2 823,195 - CCNA_00765 0.14 +1.6 823,207 - CCNA_00765 0.19 -0.3 823,214 - CCNA_00765 0.21 +0.9 823,229 + CCNA_00765 0.26 -0.8 823,279 + CCNA_00765 0.43 +0.6 823,353 + CCNA_00765 0.69 +0.9 823,353 + CCNA_00765 0.69 +0.2 823,361 - CCNA_00765 0.71 -0.5 823,361 - CCNA_00765 0.71 +2.2 823,361 - CCNA_00765 0.71 +0.7 823,361 - CCNA_00765 0.71 -0.3 823,368 + CCNA_00765 0.74 +2.1 823,368 + CCNA_00765 0.74 +1.4 823,395 - CCNA_00765 0.83 -0.6 823,449 + +1.5 823,457 - +0.1 823,458 + +1.4 823,477 + -0.7 823,505 + +0.8 823,505 + +0.5 823,505 - +2.2 823,513 - +1.0 823,513 - +0.2 823,513 - +0.9 823,516 + +2.2 823,516 + +5.2 823,516 + +0.8 823,516 + +1.5 823,516 + -0.1 823,516 + +1.0 823,516 + +0.4 823,516 + +1.0 823,516 + -0.1 823,516 + +2.4 823,524 - +0.7 823,524 - -1.4 823,524 - +0.0 823,524 - -0.9 823,536 + -0.0 823,536 + +2.4 823,537 - +0.5 823,539 - +0.5 823,560 + +2.2 823,574 + +0.5 823,574 + +0.3 823,574 + +0.9 823,574 + -1.0 823,574 + +2.8 823,574 + -0.1 823,574 + -1.7 823,575 + +0.9 823,582 - +2.0 823,582 - +0.8 823,582 - +2.5 823,582 - +1.2 823,582 - -0.3 823,582 - +2.8 823,582 - +1.8 823,582 - +0.8 823,582 - +1.5 823,582 - +1.3 823,582 - +0.4 823,582 - +1.6 823,582 - +0.7 823,583 - +1.8 823,597 + +0.7 823,597 + +0.6 823,618 + +0.1 823,618 + +1.0 823,743 - CCNA_00766 0.24 +1.3 823,743 - CCNA_00766 0.24 -0.4 823,746 + CCNA_00766 0.25 -1.1 823,754 - CCNA_00766 0.26 +0.3 823,754 - CCNA_00766 0.26 +0.5 823,770 + CCNA_00766 0.29 -1.7 823,778 - CCNA_00766 0.30 +0.3 823,790 + CCNA_00766 0.32 +0.9 823,791 + CCNA_00766 0.33 +0.1 823,791 + CCNA_00766 0.33 +1.9 823,804 - CCNA_00766 0.35 +1.4 823,824 - CCNA_00766 0.38 +1.2 823,831 + CCNA_00766 0.40 +0.2 823,836 + CCNA_00766 0.40 +0.9 823,841 + CCNA_00766 0.41 -0.3 823,844 - CCNA_00766 0.42 +0.7 823,863 - CCNA_00766 0.45 +1.2 823,904 - CCNA_00766 0.52 +0.3 823,935 - CCNA_00766 0.58 +2.2 823,935 - CCNA_00766 0.58 +0.1 823,940 + CCNA_00766 0.58 +1.4 823,945 + CCNA_00766 0.59 -0.4 823,948 - CCNA_00766 0.60 +0.5 823,948 - CCNA_00766 0.60 +0.1 823,948 - CCNA_00766 0.60 +0.3 823,950 + CCNA_00766 0.60 +0.1 823,953 - CCNA_00766 0.61 +0.9 823,953 - CCNA_00766 0.61 +0.8 823,953 - CCNA_00766 0.61 -1.2 823,967 + CCNA_00766 0.63 +3.0 823,967 + CCNA_00766 0.63 -0.2 823,967 + CCNA_00766 0.63 -1.1 823,967 + CCNA_00766 0.63 -1.4 823,975 - CCNA_00766 0.64 +0.2 823,975 - CCNA_00766 0.64 +3.0 824,009 + CCNA_00766 0.70 +0.9 824,028 + CCNA_00766 0.74 +1.2 824,037 + CCNA_00766 0.75 +1.5 824,053 + CCNA_00766 0.78 +1.1 824,053 + CCNA_00766 0.78 -1.5 824,053 + CCNA_00766 0.78 +0.5 824,053 + CCNA_00766 0.78 +0.4 824,091 + CCNA_00766 0.84 +1.1 824,100 + CCNA_00766 0.86 -0.0 824,111 - CCNA_00766 0.88 +0.6 824,163 - +0.3 824,223 - -0.6 824,267 + CCNA_00767 0.24 -0.5 824,309 + CCNA_00767 0.45 +0.6 824,309 + CCNA_00767 0.45 -0.9 824,317 - CCNA_00767 0.49 +1.4 824,317 - CCNA_00767 0.49 +0.6 824,368 + CCNA_00767 0.74 -0.1 824,376 - CCNA_00767 0.77 -1.4 824,410 + +0.4 824,412 + -0.3 824,412 + -0.3 824,420 - -0.4 824,420 - +1.0 824,420 - +2.2 824,424 + +2.3 824,429 + -0.5 824,429 + +0.8 824,429 + +0.3 824,429 + +0.6 824,437 - +0.0 824,437 - -0.4 824,442 - +1.0
Or see this region's nucleotide sequence