Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00444

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00442 and CCNA_00443 are separated by 3 nucleotidesCCNA_00443 and CCNA_00444 overlap by 1 nucleotidesCCNA_00444 and CCNA_00445 overlap by 1 nucleotides CCNA_00442: CCNA_00442 - chemotaxis histidine kinase protein cheAI, at 448,237 to 450,525 _00442 CCNA_00443: CCNA_00443 - chemotaxis protein cheW, at 450,529 to 450,996 _00443 CCNA_00444: CCNA_00444 - chemotaxis protein methyltransferase, at 450,996 to 451,877 _00444 CCNA_00445: CCNA_00445 - receiver domain-glutamate methylesterase cheBI, at 451,877 to 452,911 _00445 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 450.016 kb on - strand, within CCNA_00442at 450.019 kb on + strand, within CCNA_00442at 450.019 kb on + strand, within CCNA_00442at 450.027 kb on - strand, within CCNA_00442at 450.054 kb on + strand, within CCNA_00442at 450.055 kb on + strand, within CCNA_00442at 450.056 kb on + strand, within CCNA_00442at 450.062 kb on - strand, within CCNA_00442at 450.062 kb on - strand, within CCNA_00442at 450.079 kb on + strand, within CCNA_00442at 450.099 kb on + strand, within CCNA_00442at 450.192 kb on - strand, within CCNA_00442at 450.227 kb on + strand, within CCNA_00442at 450.229 kb on - strand, within CCNA_00442at 450.237 kb on + strand, within CCNA_00442at 450.237 kb on + strand, within CCNA_00442at 450.259 kb on + strand, within CCNA_00442at 450.280 kb on - strand, within CCNA_00442at 450.285 kb on + strand, within CCNA_00442at 450.300 kb on - strandat 450.321 kb on - strandat 450.332 kb on + strandat 450.332 kb on + strandat 450.342 kb on + strandat 450.342 kb on + strandat 450.350 kb on - strandat 450.360 kb on - strandat 450.360 kb on - strandat 450.370 kb on - strandat 450.382 kb on - strandat 450.382 kb on - strandat 450.385 kb on + strandat 450.392 kb on - strandat 450.393 kb on - strandat 450.430 kb on + strandat 450.430 kb on + strandat 450.433 kb on - strandat 450.438 kb on - strandat 450.494 kb on + strandat 450.500 kb on + strandat 450.500 kb on + strandat 450.508 kb on - strandat 450.525 kb on + strandat 450.525 kb on + strandat 450.525 kb on + strandat 450.525 kb on + strandat 450.533 kb on - strandat 450.533 kb on - strandat 450.533 kb on - strandat 450.559 kb on + strandat 450.578 kb on + strand, within CCNA_00443at 450.595 kb on + strand, within CCNA_00443at 450.597 kb on - strand, within CCNA_00443at 450.605 kb on - strand, within CCNA_00443at 450.612 kb on + strand, within CCNA_00443at 450.620 kb on - strand, within CCNA_00443at 450.620 kb on - strand, within CCNA_00443at 450.622 kb on - strand, within CCNA_00443at 450.631 kb on + strand, within CCNA_00443at 450.688 kb on + strand, within CCNA_00443at 450.709 kb on + strand, within CCNA_00443at 450.741 kb on + strand, within CCNA_00443at 450.783 kb on - strand, within CCNA_00443at 450.812 kb on + strand, within CCNA_00443at 450.814 kb on - strand, within CCNA_00443at 450.833 kb on + strand, within CCNA_00443at 450.839 kb on - strand, within CCNA_00443at 450.867 kb on + strand, within CCNA_00443at 450.872 kb on + strand, within CCNA_00443at 450.893 kb on + strand, within CCNA_00443at 450.902 kb on + strand, within CCNA_00443at 450.923 kb on + strand, within CCNA_00443at 450.952 kb on - strandat 450.976 kb on - strandat 450.976 kb on - strandat 450.981 kb on + strandat 450.981 kb on + strandat 450.989 kb on - strandat 451.018 kb on + strandat 451.018 kb on + strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.092 kb on - strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.103 kb on - strand, within CCNA_00444at 451.103 kb on - strand, within CCNA_00444at 451.127 kb on + strand, within CCNA_00444at 451.129 kb on - strand, within CCNA_00444at 451.142 kb on + strand, within CCNA_00444at 451.145 kb on - strand, within CCNA_00444at 451.150 kb on - strand, within CCNA_00444at 451.174 kb on + strand, within CCNA_00444at 451.182 kb on - strand, within CCNA_00444at 451.199 kb on + strand, within CCNA_00444at 451.234 kb on - strand, within CCNA_00444at 451.252 kb on - strand, within CCNA_00444at 451.257 kb on + strand, within CCNA_00444at 451.265 kb on - strand, within CCNA_00444at 451.279 kb on - strand, within CCNA_00444at 451.300 kb on + strand, within CCNA_00444at 451.309 kb on - strand, within CCNA_00444at 451.331 kb on - strand, within CCNA_00444at 451.347 kb on + strand, within CCNA_00444at 451.416 kb on + strand, within CCNA_00444at 451.417 kb on + strand, within CCNA_00444at 451.425 kb on + strand, within CCNA_00444at 451.425 kb on - strand, within CCNA_00444at 451.433 kb on - strand, within CCNA_00444at 451.452 kb on + strand, within CCNA_00444at 451.452 kb on + strand, within CCNA_00444at 451.460 kb on - strand, within CCNA_00444at 451.460 kb on - strand, within CCNA_00444at 451.486 kb on + strand, within CCNA_00444at 451.486 kb on + strand, within CCNA_00444at 451.535 kb on + strand, within CCNA_00444at 451.543 kb on - strand, within CCNA_00444at 451.645 kb on + strand, within CCNA_00444at 451.653 kb on - strand, within CCNA_00444at 451.664 kb on + strand, within CCNA_00444at 451.664 kb on + strand, within CCNA_00444at 451.667 kb on - strand, within CCNA_00444at 451.672 kb on - strand, within CCNA_00444at 451.710 kb on + strand, within CCNA_00444at 451.720 kb on + strand, within CCNA_00444at 451.764 kb on - strand, within CCNA_00444at 451.802 kb on + strandat 451.841 kb on - strandat 451.858 kb on + strandat 451.859 kb on + strandat 451.866 kb on - strandat 451.940 kb on + strandat 451.940 kb on + strandat 451.942 kb on + strandat 451.942 kb on + strandat 451.947 kb on + strandat 451.948 kb on - strandat 451.950 kb on - strandat 452.005 kb on - strand, within CCNA_00445at 452.008 kb on + strand, within CCNA_00445at 452.010 kb on - strand, within CCNA_00445at 452.015 kb on + strand, within CCNA_00445at 452.015 kb on + strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.025 kb on - strand, within CCNA_00445at 452.029 kb on + strand, within CCNA_00445at 452.038 kb on - strand, within CCNA_00445at 452.126 kb on + strand, within CCNA_00445at 452.126 kb on + strand, within CCNA_00445at 452.134 kb on - strand, within CCNA_00445at 452.134 kb on - strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.171 kb on - strand, within CCNA_00445at 452.171 kb on - strand, within CCNA_00445at 452.220 kb on + strand, within CCNA_00445at 452.226 kb on + strand, within CCNA_00445at 452.227 kb on - strand, within CCNA_00445at 452.228 kb on - strand, within CCNA_00445at 452.230 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.292 kb on - strand, within CCNA_00445at 452.294 kb on + strand, within CCNA_00445at 452.294 kb on + strand, within CCNA_00445at 452.299 kb on + strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.326 kb on + strand, within CCNA_00445at 452.339 kb on + strand, within CCNA_00445at 452.373 kb on + strand, within CCNA_00445at 452.408 kb on + strand, within CCNA_00445at 452.462 kb on - strand, within CCNA_00445at 452.466 kb on + strand, within CCNA_00445at 452.496 kb on + strand, within CCNA_00445at 452.503 kb on + strand, within CCNA_00445at 452.503 kb on + strand, within CCNA_00445at 452.512 kb on - strand, within CCNA_00445at 452.512 kb on - strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.546 kb on + strand, within CCNA_00445at 452.552 kb on - strand, within CCNA_00445at 452.553 kb on - strand, within CCNA_00445at 452.553 kb on - strand, within CCNA_00445at 452.554 kb on - strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.583 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.689 kb on + strand, within CCNA_00445at 452.708 kb on + strand, within CCNA_00445at 452.735 kb on + strand, within CCNA_00445at 452.740 kb on + strand, within CCNA_00445at 452.763 kb on - strand, within CCNA_00445at 452.769 kb on - strand, within CCNA_00445at 452.787 kb on - strand, within CCNA_00445at 452.793 kb on - strand, within CCNA_00445at 452.815 kb on + strandat 452.826 kb on + strandat 452.862 kb on - strandat 452.862 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
remove
450,016 - CCNA_00442 0.78 -0.3
450,019 + CCNA_00442 0.78 +2.1
450,019 + CCNA_00442 0.78 +2.5
450,027 - CCNA_00442 0.78 -0.6
450,054 + CCNA_00442 0.79 +2.6
450,055 + CCNA_00442 0.79 +2.7
450,056 + CCNA_00442 0.79 +1.5
450,062 - CCNA_00442 0.80 +1.3
450,062 - CCNA_00442 0.80 +0.3
450,079 + CCNA_00442 0.80 +2.1
450,099 + CCNA_00442 0.81 +3.7
450,192 - CCNA_00442 0.85 +2.1
450,227 + CCNA_00442 0.87 +2.3
450,229 - CCNA_00442 0.87 +1.9
450,237 + CCNA_00442 0.87 +1.9
450,237 + CCNA_00442 0.87 +2.4
450,259 + CCNA_00442 0.88 +2.2
450,280 - CCNA_00442 0.89 -1.5
450,285 + CCNA_00442 0.89 +1.9
450,300 - -0.7
450,321 - -0.6
450,332 + +2.8
450,332 + +2.2
450,342 + +2.1
450,342 + +2.6
450,350 - -0.5
450,360 - +0.9
450,360 - +2.3
450,370 - -0.0
450,382 - -2.0
450,382 - -0.8
450,385 + +1.7
450,392 - +1.6
450,393 - -1.0
450,430 + +2.5
450,430 + +2.2
450,433 - +0.7
450,438 - -0.9
450,494 + +1.9
450,500 + +2.1
450,500 + +2.3
450,508 - -1.7
450,525 + +3.2
450,525 + +2.4
450,525 + +2.5
450,525 + +2.8
450,533 - +0.6
450,533 - +1.9
450,533 - -1.4
450,559 + +1.6
450,578 + CCNA_00443 0.10 +1.7
450,595 + CCNA_00443 0.14 +2.3
450,597 - CCNA_00443 0.15 -1.2
450,605 - CCNA_00443 0.16 -0.6
450,612 + CCNA_00443 0.18 +1.5
450,620 - CCNA_00443 0.19 -0.4
450,620 - CCNA_00443 0.19 -0.0
450,622 - CCNA_00443 0.20 +0.2
450,631 + CCNA_00443 0.22 +2.0
450,688 + CCNA_00443 0.34 +1.8
450,709 + CCNA_00443 0.38 +2.0
450,741 + CCNA_00443 0.45 -0.0
450,783 - CCNA_00443 0.54 -0.6
450,812 + CCNA_00443 0.60 +1.8
450,814 - CCNA_00443 0.61 -0.9
450,833 + CCNA_00443 0.65 +2.0
450,839 - CCNA_00443 0.66 -0.2
450,867 + CCNA_00443 0.72 +2.1
450,872 + CCNA_00443 0.73 +2.6
450,893 + CCNA_00443 0.78 +1.6
450,902 + CCNA_00443 0.80 +2.6
450,923 + CCNA_00443 0.84 +1.7
450,952 - -1.2
450,976 - +1.4
450,976 - +0.1
450,981 + +3.7
450,981 + +3.1
450,989 - -0.7
451,018 + +1.2
451,018 + +1.4
451,026 - -1.9
451,026 - -1.1
451,026 - +1.6
451,092 - CCNA_00444 0.11 +0.0
451,094 + CCNA_00444 0.11 +1.9
451,094 + CCNA_00444 0.11 +1.8
451,094 + CCNA_00444 0.11 +2.4
451,094 + CCNA_00444 0.11 +2.1
451,094 + CCNA_00444 0.11 +1.8
451,102 - CCNA_00444 0.12 +1.2
451,102 - CCNA_00444 0.12 -0.2
451,102 - CCNA_00444 0.12 -0.7
451,102 - CCNA_00444 0.12 +0.2
451,103 - CCNA_00444 0.12 +2.3
451,103 - CCNA_00444 0.12 +0.6
451,127 + CCNA_00444 0.15 +3.0
451,129 - CCNA_00444 0.15 -0.9
451,142 + CCNA_00444 0.17 -0.7
451,145 - CCNA_00444 0.17 +3.9
451,150 - CCNA_00444 0.17 -0.1
451,174 + CCNA_00444 0.20 +1.9
451,182 - CCNA_00444 0.21 +1.9
451,199 + CCNA_00444 0.23 +2.5
451,234 - CCNA_00444 0.27 +1.7
451,252 - CCNA_00444 0.29 +0.5
451,257 + CCNA_00444 0.30 +2.1
451,265 - CCNA_00444 0.30 -1.2
451,279 - CCNA_00444 0.32 -0.3
451,300 + CCNA_00444 0.34 +2.5
451,309 - CCNA_00444 0.35 +0.7
451,331 - CCNA_00444 0.38 -0.7
451,347 + CCNA_00444 0.40 +1.8
451,416 + CCNA_00444 0.48 +1.8
451,417 + CCNA_00444 0.48 +1.9
451,425 + CCNA_00444 0.49 +2.1
451,425 - CCNA_00444 0.49 +0.2
451,433 - CCNA_00444 0.50 -0.6
451,452 + CCNA_00444 0.52 +1.9
451,452 + CCNA_00444 0.52 +2.2
451,460 - CCNA_00444 0.53 +0.5
451,460 - CCNA_00444 0.53 -0.5
451,486 + CCNA_00444 0.56 +1.5
451,486 + CCNA_00444 0.56 +1.8
451,535 + CCNA_00444 0.61 +3.3
451,543 - CCNA_00444 0.62 -0.5
451,645 + CCNA_00444 0.74 +3.7
451,653 - CCNA_00444 0.74 -0.8
451,664 + CCNA_00444 0.76 +1.6
451,664 + CCNA_00444 0.76 +1.7
451,667 - CCNA_00444 0.76 -0.7
451,672 - CCNA_00444 0.77 +1.1
451,710 + CCNA_00444 0.81 +2.6
451,720 + CCNA_00444 0.82 +2.7
451,764 - CCNA_00444 0.87 -0.3
451,802 + +2.4
451,841 - +0.3
451,858 + +3.2
451,859 + +1.9
451,866 - -0.2
451,940 + +2.2
451,940 + +1.6
451,942 + +2.0
451,942 + +2.3
451,947 + +2.0
451,948 - -0.5
451,950 - -0.3
452,005 - CCNA_00445 0.12 -0.3
452,008 + CCNA_00445 0.13 +3.1
452,010 - CCNA_00445 0.13 +1.9
452,015 + CCNA_00445 0.13 +2.4
452,015 + CCNA_00445 0.13 +1.7
452,023 - CCNA_00445 0.14 -0.8
452,023 - CCNA_00445 0.14 -1.4
452,023 - CCNA_00445 0.14 +1.6
452,025 - CCNA_00445 0.14 -0.5
452,029 + CCNA_00445 0.15 +2.4
452,038 - CCNA_00445 0.16 +0.0
452,126 + CCNA_00445 0.24 +1.4
452,126 + CCNA_00445 0.24 +2.4
452,134 - CCNA_00445 0.25 +0.6
452,134 - CCNA_00445 0.25 -0.1
452,163 + CCNA_00445 0.28 +2.7
452,163 + CCNA_00445 0.28 +3.6
452,163 + CCNA_00445 0.28 +2.3
452,163 + CCNA_00445 0.28 +1.9
452,163 + CCNA_00445 0.28 +2.4
452,163 + CCNA_00445 0.28 +2.3
452,163 + CCNA_00445 0.28 +2.7
452,171 - CCNA_00445 0.28 -2.0
452,171 - CCNA_00445 0.28 +0.5
452,220 + CCNA_00445 0.33 +2.3
452,226 + CCNA_00445 0.34 +2.4
452,227 - CCNA_00445 0.34 -0.6
452,228 - CCNA_00445 0.34 -2.4
452,230 + CCNA_00445 0.34 +2.3
452,248 + CCNA_00445 0.36 +3.8
452,248 + CCNA_00445 0.36 +3.0
452,248 + CCNA_00445 0.36 +2.0
452,256 - CCNA_00445 0.37 -0.5
452,256 - CCNA_00445 0.37 +0.6
452,256 - CCNA_00445 0.37 -0.6
452,292 - CCNA_00445 0.40 +0.7
452,294 + CCNA_00445 0.40 +4.1
452,294 + CCNA_00445 0.40 +2.2
452,299 + CCNA_00445 0.41 +2.1
452,302 - CCNA_00445 0.41 +0.0
452,302 - CCNA_00445 0.41 -0.5
452,302 - CCNA_00445 0.41 +0.2
452,302 - CCNA_00445 0.41 -1.6
452,326 + CCNA_00445 0.43 +2.5
452,339 + CCNA_00445 0.45 +2.4
452,373 + CCNA_00445 0.48 +2.5
452,408 + CCNA_00445 0.51 +3.0
452,462 - CCNA_00445 0.57 -0.6
452,466 + CCNA_00445 0.57 +2.8
452,496 + CCNA_00445 0.60 +2.6
452,503 + CCNA_00445 0.60 +2.5
452,503 + CCNA_00445 0.60 +2.6
452,512 - CCNA_00445 0.61 +1.1
452,512 - CCNA_00445 0.61 -0.3
452,545 + CCNA_00445 0.65 +2.2
452,545 + CCNA_00445 0.65 +1.8
452,545 + CCNA_00445 0.65 +1.7
452,546 + CCNA_00445 0.65 +2.2
452,552 - CCNA_00445 0.65 +0.3
452,553 - CCNA_00445 0.65 +0.0
452,553 - CCNA_00445 0.65 -0.2
452,554 - CCNA_00445 0.65 -0.4
452,575 + CCNA_00445 0.67 +2.4
452,575 + CCNA_00445 0.67 +2.4
452,575 + CCNA_00445 0.67 +2.8
452,583 - CCNA_00445 0.68 +0.4
452,670 - CCNA_00445 0.77 +0.9
452,670 - CCNA_00445 0.77 -1.8
452,670 - CCNA_00445 0.77 -0.1
452,670 - CCNA_00445 0.77 -0.1
452,670 - CCNA_00445 0.77 -0.3
452,689 + CCNA_00445 0.78 +1.9
452,708 + CCNA_00445 0.80 +2.9
452,735 + CCNA_00445 0.83 +2.3
452,740 + CCNA_00445 0.83 +2.1
452,763 - CCNA_00445 0.86 -2.1
452,769 - CCNA_00445 0.86 +0.9
452,787 - CCNA_00445 0.88 -0.4
452,793 - CCNA_00445 0.89 -0.3
452,815 + +2.1
452,826 + +2.5
452,862 - +0.3
452,862 - -0.1

Or see this region's nucleotide sequence