Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00378

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00377 and CCNA_00378 are separated by 21 nucleotidesCCNA_00378 and CCNA_00379 overlap by 1 nucleotidesCCNA_00379 and CCNA_00380 are separated by 238 nucleotides CCNA_00377: CCNA_00377 - chromosome partition protein Smc, at 391,953 to 395,396 _00377 CCNA_00378: CCNA_00378 - thiol:disulfide interchange protein dsbA, at 395,418 to 396,026 _00378 CCNA_00379: CCNA_00379 - thiol:disulfide interchange protein dsbA, at 396,026 to 396,640 _00379 CCNA_00380: CCNA_00380 - conserved hypothetical cytosolic protein, at 396,879 to 397,418 _00380 Position (kb) 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 394.430 kb on + strand, within CCNA_00377at 394.450 kb on + strand, within CCNA_00377at 394.515 kb on + strand, within CCNA_00377at 394.623 kb on + strand, within CCNA_00377at 394.657 kb on - strand, within CCNA_00377at 394.701 kb on - strand, within CCNA_00377at 394.718 kb on - strand, within CCNA_00377at 394.725 kb on - strand, within CCNA_00377at 394.730 kb on - strand, within CCNA_00377at 394.730 kb on - strand, within CCNA_00377at 394.738 kb on + strand, within CCNA_00377at 394.746 kb on - strand, within CCNA_00377at 394.746 kb on - strand, within CCNA_00377at 394.789 kb on + strand, within CCNA_00377at 394.830 kb on + strand, within CCNA_00377at 394.845 kb on + strand, within CCNA_00377at 394.859 kb on - strand, within CCNA_00377at 394.870 kb on + strand, within CCNA_00377at 394.882 kb on + strand, within CCNA_00377at 394.890 kb on - strand, within CCNA_00377at 394.901 kb on + strand, within CCNA_00377at 394.901 kb on + strand, within CCNA_00377at 394.909 kb on - strand, within CCNA_00377at 394.915 kb on - strand, within CCNA_00377at 394.920 kb on + strand, within CCNA_00377at 394.941 kb on - strand, within CCNA_00377at 394.958 kb on - strand, within CCNA_00377at 394.958 kb on - strand, within CCNA_00377at 394.963 kb on - strand, within CCNA_00377at 395.019 kb on - strand, within CCNA_00377at 395.041 kb on - strand, within CCNA_00377at 395.063 kb on - strandat 395.107 kb on + strandat 395.107 kb on + strandat 395.117 kb on + strandat 395.126 kb on - strandat 395.148 kb on + strandat 395.156 kb on - strandat 395.177 kb on - strandat 395.246 kb on - strandat 395.252 kb on + strandat 395.252 kb on + strandat 395.252 kb on + strandat 395.260 kb on - strandat 395.265 kb on - strandat 395.270 kb on - strandat 395.278 kb on + strandat 395.279 kb on + strandat 395.321 kb on + strandat 395.329 kb on - strandat 395.332 kb on + strandat 395.340 kb on - strandat 395.340 kb on - strandat 395.391 kb on - strandat 395.393 kb on + strandat 395.401 kb on - strandat 395.401 kb on - strandat 395.408 kb on + strandat 395.416 kb on + strandat 395.424 kb on - strandat 395.424 kb on - strandat 395.424 kb on - strandat 395.424 kb on - strandat 395.424 kb on - strandat 395.445 kb on - strandat 395.451 kb on - strandat 395.473 kb on + strandat 395.475 kb on + strandat 395.475 kb on - strandat 395.481 kb on - strand, within CCNA_00378at 395.481 kb on - strandat 395.518 kb on + strand, within CCNA_00378at 395.520 kb on - strand, within CCNA_00378at 395.520 kb on - strand, within CCNA_00378at 395.520 kb on - strand, within CCNA_00378at 395.522 kb on + strand, within CCNA_00378at 395.525 kb on - strand, within CCNA_00378at 395.552 kb on + strand, within CCNA_00378at 395.557 kb on + strand, within CCNA_00378at 395.562 kb on + strand, within CCNA_00378at 395.570 kb on + strand, within CCNA_00378at 395.570 kb on + strand, within CCNA_00378at 395.580 kb on + strand, within CCNA_00378at 395.580 kb on + strand, within CCNA_00378at 395.634 kb on + strand, within CCNA_00378at 395.634 kb on - strand, within CCNA_00378at 395.649 kb on - strand, within CCNA_00378at 395.692 kb on + strand, within CCNA_00378at 395.700 kb on - strand, within CCNA_00378at 395.700 kb on - strand, within CCNA_00378at 395.700 kb on - strand, within CCNA_00378at 395.733 kb on - strand, within CCNA_00378at 395.845 kb on + strand, within CCNA_00378at 395.864 kb on + strand, within CCNA_00378at 395.872 kb on - strand, within CCNA_00378at 395.895 kb on - strand, within CCNA_00378at 395.921 kb on + strand, within CCNA_00378at 395.924 kb on - strand, within CCNA_00378at 395.973 kb on - strandat 396.007 kb on - strandat 396.014 kb on + strandat 396.022 kb on - strandat 396.621 kb on + strandat 396.642 kb on + strandat 396.685 kb on + strandat 396.820 kb on + strandat 396.820 kb on + strandat 396.823 kb on - strandat 396.828 kb on - strandat 396.828 kb on - strandat 396.828 kb on - strandat 396.846 kb on - strandat 396.856 kb on - strandat 396.865 kb on + strandat 396.884 kb on + strandat 396.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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394,430 + CCNA_00377 0.72 -1.8
394,450 + CCNA_00377 0.73 -2.0
394,515 + CCNA_00377 0.74 -0.8
394,623 + CCNA_00377 0.78 -1.0
394,657 - CCNA_00377 0.79 +0.8
394,701 - CCNA_00377 0.80 +1.6
394,718 - CCNA_00377 0.80 -1.6
394,725 - CCNA_00377 0.80 -0.2
394,730 - CCNA_00377 0.81 +0.3
394,730 - CCNA_00377 0.81 +2.6
394,738 + CCNA_00377 0.81 -0.2
394,746 - CCNA_00377 0.81 -0.4
394,746 - CCNA_00377 0.81 -0.4
394,789 + CCNA_00377 0.82 +0.4
394,830 + CCNA_00377 0.84 -0.1
394,845 + CCNA_00377 0.84 -2.0
394,859 - CCNA_00377 0.84 +2.4
394,870 + CCNA_00377 0.85 +1.5
394,882 + CCNA_00377 0.85 -0.5
394,890 - CCNA_00377 0.85 +1.4
394,901 + CCNA_00377 0.86 +0.2
394,901 + CCNA_00377 0.86 +0.5
394,909 - CCNA_00377 0.86 -0.1
394,915 - CCNA_00377 0.86 +1.2
394,920 + CCNA_00377 0.86 -0.6
394,941 - CCNA_00377 0.87 -2.5
394,958 - CCNA_00377 0.87 +2.3
394,958 - CCNA_00377 0.87 +1.8
394,963 - CCNA_00377 0.87 +1.8
395,019 - CCNA_00377 0.89 +0.3
395,041 - CCNA_00377 0.90 +4.0
395,063 - +1.3
395,107 + -0.3
395,107 + -1.6
395,117 + -0.7
395,126 - -0.3
395,148 + -1.1
395,156 - +2.3
395,177 - +0.3
395,246 - +2.2
395,252 + +1.0
395,252 + -0.1
395,252 + +0.6
395,260 - +1.3
395,265 - +0.7
395,270 - -0.2
395,278 + -0.3
395,279 + -0.9
395,321 + +1.4
395,329 - +0.5
395,332 + -1.1
395,340 - +0.3
395,340 - -2.5
395,391 - +0.6
395,393 + -1.7
395,401 - +1.5
395,401 - +1.6
395,408 + -1.8
395,416 + -0.5
395,424 - +0.2
395,424 - -1.2
395,424 - -0.4
395,424 - +2.1
395,424 - +0.5
395,445 - +1.5
395,451 - -0.7
395,473 + -2.0
395,475 + +0.6
395,475 - +2.2
395,481 - CCNA_00378 0.10 +1.4
395,481 - +3.8
395,518 + CCNA_00378 0.16 -0.3
395,520 - CCNA_00378 0.17 +1.6
395,520 - CCNA_00378 0.17 +2.6
395,520 - CCNA_00378 0.17 +1.4
395,522 + CCNA_00378 0.17 -1.6
395,525 - CCNA_00378 0.18 +3.3
395,552 + CCNA_00378 0.22 +0.1
395,557 + CCNA_00378 0.23 -0.0
395,562 + CCNA_00378 0.24 -1.3
395,570 + CCNA_00378 0.25 -0.4
395,570 + CCNA_00378 0.25 -1.4
395,580 + CCNA_00378 0.27 -1.0
395,580 + CCNA_00378 0.27 +1.5
395,634 + CCNA_00378 0.35 -0.1
395,634 - CCNA_00378 0.35 +2.7
395,649 - CCNA_00378 0.38 +4.1
395,692 + CCNA_00378 0.45 +0.2
395,700 - CCNA_00378 0.46 +1.1
395,700 - CCNA_00378 0.46 +2.3
395,700 - CCNA_00378 0.46 +1.9
395,733 - CCNA_00378 0.52 +1.6
395,845 + CCNA_00378 0.70 -1.3
395,864 + CCNA_00378 0.73 +0.2
395,872 - CCNA_00378 0.75 +1.1
395,895 - CCNA_00378 0.78 +2.1
395,921 + CCNA_00378 0.83 +1.8
395,924 - CCNA_00378 0.83 +2.5
395,973 - +2.1
396,007 - +2.2
396,014 + -1.2
396,022 - +2.7
396,621 + -1.0
396,642 + -1.8
396,685 + -0.7
396,820 + -0.9
396,820 + +0.1
396,823 - +1.2
396,828 - +0.7
396,828 - +0.7
396,828 - +0.1
396,846 - +1.9
396,856 - +4.1
396,865 + +0.8
396,884 + -0.2
396,894 - -0.3

Or see this region's nucleotide sequence