Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00355 and CCNA_00356 are separated by 70 nucleotides CCNA_00356 and CCNA_00357 are separated by 108 nucleotides CCNA_00357 and CCNA_00358 are separated by 37 nucleotides CCNA_00358 and CCNA_00359 are separated by 82 nucleotides
CCNA_00355: CCNA_00355 - hypothetical protein with pentapeptide repeats, at 371,323 to 372,567
_00355
CCNA_00356: CCNA_00356 - outer membrane protein, at 372,638 to 373,402
_00356
CCNA_00357: CCNA_00357 - secretory tripeptidyl aminopeptidase, at 373,511 to 374,938
_00357
CCNA_00358: CCNA_00358 - delta 3,5-delta2,4-dienoyl-CoA isomerase precursor, at 374,976 to 375,836
_00358
CCNA_00359: CCNA_00359 - SH3 domain-containing cell surface protein, at 375,919 to 376,716
_00359
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 372.525 kb on - strand at 372.618 kb on + strand at 372.718 kb on + strand, within CCNA_00356 at 372.778 kb on + strand, within CCNA_00356 at 372.864 kb on + strand, within CCNA_00356 at 372.872 kb on + strand, within CCNA_00356 at 372.880 kb on - strand, within CCNA_00356 at 372.895 kb on + strand, within CCNA_00356 at 372.972 kb on + strand, within CCNA_00356 at 372.977 kb on + strand, within CCNA_00356 at 372.990 kb on - strand, within CCNA_00356 at 372.996 kb on + strand, within CCNA_00356 at 373.004 kb on - strand, within CCNA_00356 at 373.027 kb on - strand, within CCNA_00356 at 373.032 kb on + strand, within CCNA_00356 at 373.040 kb on + strand, within CCNA_00356 at 373.043 kb on - strand, within CCNA_00356 at 373.079 kb on + strand, within CCNA_00356 at 373.087 kb on - strand, within CCNA_00356 at 373.118 kb on - strand, within CCNA_00356 at 373.156 kb on + strand, within CCNA_00356 at 373.160 kb on - strand, within CCNA_00356 at 373.162 kb on - strand, within CCNA_00356 at 373.172 kb on + strand, within CCNA_00356 at 373.187 kb on + strand, within CCNA_00356 at 373.190 kb on - strand, within CCNA_00356 at 373.192 kb on + strand, within CCNA_00356 at 373.200 kb on - strand, within CCNA_00356 at 373.290 kb on + strand, within CCNA_00356 at 373.321 kb on + strand, within CCNA_00356 at 373.331 kb on + strand at 373.418 kb on + strand at 373.418 kb on + strand at 373.418 kb on + strand at 373.418 kb on + strand at 373.418 kb on + strand at 373.418 kb on + strand at 373.426 kb on - strand at 373.426 kb on - strand at 373.426 kb on - strand at 373.449 kb on - strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.458 kb on + strand at 373.466 kb on - strand at 373.466 kb on - strand at 373.478 kb on - strand at 373.478 kb on - strand at 373.497 kb on + strand at 373.499 kb on + strand at 373.499 kb on + strand at 373.515 kb on - strand at 373.525 kb on + strand at 373.525 kb on + strand at 373.525 kb on + strand at 373.533 kb on - strand at 373.533 kb on - strand at 373.552 kb on + strand at 373.562 kb on + strand at 373.597 kb on + strand at 373.605 kb on - strand at 373.610 kb on + strand at 373.664 kb on + strand, within CCNA_00357 at 373.671 kb on - strand, within CCNA_00357 at 373.687 kb on + strand, within CCNA_00357 at 373.696 kb on - strand, within CCNA_00357 at 373.712 kb on + strand, within CCNA_00357 at 373.738 kb on + strand, within CCNA_00357 at 373.738 kb on + strand, within CCNA_00357 at 373.746 kb on - strand, within CCNA_00357 at 373.788 kb on + strand, within CCNA_00357 at 373.830 kb on - strand, within CCNA_00357 at 373.874 kb on + strand, within CCNA_00357 at 373.877 kb on - strand, within CCNA_00357 at 373.877 kb on - strand, within CCNA_00357 at 373.879 kb on + strand, within CCNA_00357 at 373.879 kb on + strand, within CCNA_00357 at 373.898 kb on + strand, within CCNA_00357 at 373.902 kb on - strand, within CCNA_00357 at 373.906 kb on - strand, within CCNA_00357 at 373.906 kb on - strand, within CCNA_00357 at 373.912 kb on - strand, within CCNA_00357 at 373.925 kb on + strand, within CCNA_00357 at 373.928 kb on - strand, within CCNA_00357 at 373.970 kb on - strand, within CCNA_00357 at 373.996 kb on + strand, within CCNA_00357 at 374.011 kb on - strand, within CCNA_00357 at 374.012 kb on - strand, within CCNA_00357 at 374.038 kb on + strand, within CCNA_00357 at 374.057 kb on - strand, within CCNA_00357 at 374.059 kb on + strand, within CCNA_00357 at 374.066 kb on + strand, within CCNA_00357 at 374.068 kb on + strand, within CCNA_00357 at 374.116 kb on + strand, within CCNA_00357 at 374.129 kb on + strand, within CCNA_00357 at 374.143 kb on + strand, within CCNA_00357 at 374.144 kb on + strand, within CCNA_00357 at 374.162 kb on + strand, within CCNA_00357 at 374.165 kb on + strand, within CCNA_00357 at 374.173 kb on - strand, within CCNA_00357 at 374.183 kb on - strand, within CCNA_00357 at 374.194 kb on - strand, within CCNA_00357 at 374.264 kb on + strand, within CCNA_00357 at 374.281 kb on + strand, within CCNA_00357 at 374.286 kb on + strand, within CCNA_00357 at 374.354 kb on + strand, within CCNA_00357 at 374.420 kb on + strand, within CCNA_00357 at 374.420 kb on + strand, within CCNA_00357 at 374.426 kb on - strand, within CCNA_00357 at 374.452 kb on + strand, within CCNA_00357 at 374.480 kb on + strand, within CCNA_00357 at 374.502 kb on - strand at 374.507 kb on + strand, within CCNA_00357 at 374.507 kb on + strand, within CCNA_00357 at 374.512 kb on + strand, within CCNA_00357 at 374.515 kb on - strand, within CCNA_00357 at 374.576 kb on + strand, within CCNA_00357 at 374.584 kb on - strand, within CCNA_00357 at 374.607 kb on - strand, within CCNA_00357 at 374.618 kb on - strand, within CCNA_00357 at 374.633 kb on - strand, within CCNA_00357 at 374.683 kb on + strand, within CCNA_00357 at 374.705 kb on - strand, within CCNA_00357 at 374.829 kb on + strand at 374.872 kb on + strand at 374.942 kb on + strand at 374.969 kb on - strand at 374.971 kb on - strand at 375.002 kb on + strand at 375.002 kb on + strand at 375.007 kb on + strand at 375.007 kb on + strand at 375.010 kb on - strand at 375.010 kb on - strand at 375.032 kb on - strand at 375.032 kb on - strand at 375.055 kb on - strand at 375.059 kb on - strand at 375.069 kb on + strand, within CCNA_00358 at 375.091 kb on + strand, within CCNA_00358 at 375.094 kb on + strand, within CCNA_00358 at 375.210 kb on + strand, within CCNA_00358 at 375.239 kb on - strand, within CCNA_00358 at 375.249 kb on - strand, within CCNA_00358 at 375.280 kb on - strand, within CCNA_00358 at 375.281 kb on - strand, within CCNA_00358 at 375.287 kb on + strand, within CCNA_00358 at 375.292 kb on + strand, within CCNA_00358 at 375.300 kb on - strand, within CCNA_00358 at 375.300 kb on - strand, within CCNA_00358 at 375.305 kb on - strand, within CCNA_00358 at 375.338 kb on + strand, within CCNA_00358 at 375.373 kb on + strand, within CCNA_00358 at 375.381 kb on - strand, within CCNA_00358 at 375.508 kb on + strand, within CCNA_00358 at 375.517 kb on - strand, within CCNA_00358 at 375.518 kb on - strand, within CCNA_00358 at 375.518 kb on - strand, within CCNA_00358 at 375.597 kb on - strand, within CCNA_00358 at 375.614 kb on - strand, within CCNA_00358 at 375.628 kb on - strand, within CCNA_00358 at 375.731 kb on + strand, within CCNA_00358 at 375.739 kb on - strand, within CCNA_00358 at 375.739 kb on - strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.771 kb on - strand at 375.792 kb on - strand at 375.807 kb on + strand at 375.807 kb on + strand at 375.807 kb on + strand at 375.807 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.855 kb on - strand at 375.885 kb on + strand at 375.890 kb on + strand at 375.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 372,525 - -0.7 372,618 + -0.4 372,718 + CCNA_00356 0.10 +0.8 372,778 + CCNA_00356 0.18 +1.2 372,864 + CCNA_00356 0.30 +2.2 372,872 + CCNA_00356 0.31 +0.2 372,880 - CCNA_00356 0.32 -0.1 372,895 + CCNA_00356 0.34 +0.0 372,972 + CCNA_00356 0.44 -0.3 372,977 + CCNA_00356 0.44 -0.3 372,990 - CCNA_00356 0.46 -0.8 372,996 + CCNA_00356 0.47 +0.8 373,004 - CCNA_00356 0.48 -0.4 373,027 - CCNA_00356 0.51 -1.1 373,032 + CCNA_00356 0.52 -1.4 373,040 + CCNA_00356 0.53 +0.6 373,043 - CCNA_00356 0.53 -1.8 373,079 + CCNA_00356 0.58 -0.4 373,087 - CCNA_00356 0.59 -0.0 373,118 - CCNA_00356 0.63 +0.2 373,156 + CCNA_00356 0.68 +0.1 373,160 - CCNA_00356 0.68 -0.4 373,162 - CCNA_00356 0.68 +1.5 373,172 + CCNA_00356 0.70 +0.6 373,187 + CCNA_00356 0.72 +0.7 373,190 - CCNA_00356 0.72 -2.8 373,192 + CCNA_00356 0.72 -1.4 373,200 - CCNA_00356 0.73 -0.5 373,290 + CCNA_00356 0.85 -1.9 373,321 + CCNA_00356 0.89 -1.0 373,331 + +0.9 373,418 + -1.1 373,418 + -1.2 373,418 + +0.0 373,418 + -1.4 373,418 + -0.4 373,418 + -0.8 373,426 - -2.3 373,426 - +1.0 373,426 - +2.2 373,449 - +2.0 373,458 + -1.7 373,458 + +0.8 373,458 + -0.1 373,458 + -0.3 373,458 + -0.5 373,458 + +0.5 373,458 + +0.9 373,458 + -0.0 373,458 + -0.2 373,458 + +0.1 373,466 - +0.2 373,466 - +0.8 373,478 - -0.4 373,478 - +0.2 373,497 + +1.5 373,499 + +2.3 373,499 + +0.3 373,515 - +0.1 373,525 + -0.1 373,525 + -0.7 373,525 + -1.7 373,533 - +0.2 373,533 - -2.3 373,552 + +0.9 373,562 + +0.3 373,597 + +2.5 373,605 - -0.1 373,610 + +0.7 373,664 + CCNA_00357 0.11 +0.3 373,671 - CCNA_00357 0.11 +0.1 373,687 + CCNA_00357 0.12 +0.5 373,696 - CCNA_00357 0.13 +0.6 373,712 + CCNA_00357 0.14 +1.2 373,738 + CCNA_00357 0.16 -0.5 373,738 + CCNA_00357 0.16 -1.0 373,746 - CCNA_00357 0.16 +0.3 373,788 + CCNA_00357 0.19 +0.8 373,830 - CCNA_00357 0.22 +0.8 373,874 + CCNA_00357 0.25 +0.1 373,877 - CCNA_00357 0.26 -1.1 373,877 - CCNA_00357 0.26 -0.0 373,879 + CCNA_00357 0.26 +0.7 373,879 + CCNA_00357 0.26 -0.7 373,898 + CCNA_00357 0.27 -1.0 373,902 - CCNA_00357 0.27 -1.8 373,906 - CCNA_00357 0.28 -0.4 373,906 - CCNA_00357 0.28 -1.6 373,912 - CCNA_00357 0.28 +0.6 373,925 + CCNA_00357 0.29 +0.7 373,928 - CCNA_00357 0.29 -0.6 373,970 - CCNA_00357 0.32 -1.4 373,996 + CCNA_00357 0.34 -0.4 374,011 - CCNA_00357 0.35 -1.4 374,012 - CCNA_00357 0.35 -0.3 374,038 + CCNA_00357 0.37 -1.6 374,057 - CCNA_00357 0.38 +0.0 374,059 + CCNA_00357 0.38 +0.3 374,066 + CCNA_00357 0.39 -0.1 374,068 + CCNA_00357 0.39 +1.1 374,116 + CCNA_00357 0.42 +0.1 374,129 + CCNA_00357 0.43 +3.0 374,143 + CCNA_00357 0.44 -1.0 374,144 + CCNA_00357 0.44 +0.3 374,162 + CCNA_00357 0.46 +0.3 374,165 + CCNA_00357 0.46 +0.5 374,173 - CCNA_00357 0.46 +0.2 374,183 - CCNA_00357 0.47 +0.7 374,194 - CCNA_00357 0.48 +0.8 374,264 + CCNA_00357 0.53 +0.1 374,281 + CCNA_00357 0.54 +0.5 374,286 + CCNA_00357 0.54 +0.9 374,354 + CCNA_00357 0.59 +1.2 374,420 + CCNA_00357 0.64 +0.9 374,420 + CCNA_00357 0.64 -1.2 374,426 - CCNA_00357 0.64 +2.2 374,452 + CCNA_00357 0.66 +0.9 374,480 + CCNA_00357 0.68 +0.8 374,502 - +3.8 374,507 + CCNA_00357 0.70 -0.6 374,507 + CCNA_00357 0.70 +0.4 374,512 + CCNA_00357 0.70 +1.3 374,515 - CCNA_00357 0.70 -0.7 374,576 + CCNA_00357 0.75 +1.2 374,584 - CCNA_00357 0.75 +1.6 374,607 - CCNA_00357 0.77 +0.4 374,618 - CCNA_00357 0.78 -0.8 374,633 - CCNA_00357 0.79 -0.1 374,683 + CCNA_00357 0.82 +1.0 374,705 - CCNA_00357 0.84 +0.0 374,829 + +0.3 374,872 + +1.5 374,942 + +2.2 374,969 - +0.6 374,971 - +0.2 375,002 + -0.4 375,002 + +1.5 375,007 + -0.4 375,007 + +0.3 375,010 - +0.4 375,010 - -1.1 375,032 - +2.1 375,032 - -0.7 375,055 - -2.0 375,059 - -0.8 375,069 + CCNA_00358 0.11 +0.6 375,091 + CCNA_00358 0.13 +0.2 375,094 + CCNA_00358 0.14 -1.3 375,210 + CCNA_00358 0.27 -0.5 375,239 - CCNA_00358 0.31 -2.3 375,249 - CCNA_00358 0.32 +1.5 375,280 - CCNA_00358 0.35 +0.4 375,281 - CCNA_00358 0.35 +0.7 375,287 + CCNA_00358 0.36 -0.8 375,292 + CCNA_00358 0.37 +1.5 375,300 - CCNA_00358 0.38 -1.2 375,300 - CCNA_00358 0.38 -0.2 375,305 - CCNA_00358 0.38 +0.3 375,338 + CCNA_00358 0.42 +0.0 375,373 + CCNA_00358 0.46 -0.4 375,381 - CCNA_00358 0.47 -1.1 375,508 + CCNA_00358 0.62 +1.1 375,517 - CCNA_00358 0.63 -0.0 375,518 - CCNA_00358 0.63 -0.2 375,518 - CCNA_00358 0.63 -1.1 375,597 - CCNA_00358 0.72 +0.0 375,614 - CCNA_00358 0.74 +1.5 375,628 - CCNA_00358 0.76 -1.5 375,731 + CCNA_00358 0.88 +0.6 375,739 - CCNA_00358 0.89 -1.3 375,739 - CCNA_00358 0.89 +0.1 375,741 + CCNA_00358 0.89 -0.4 375,741 + CCNA_00358 0.89 +0.1 375,741 + CCNA_00358 0.89 +1.6 375,741 + CCNA_00358 0.89 -0.0 375,771 - +0.2 375,792 - -1.1 375,807 + -0.2 375,807 + +0.0 375,807 + +0.8 375,807 + -1.5 375,845 + +1.1 375,845 + +1.8 375,845 + +0.8 375,845 + -0.8 375,845 + -1.1 375,845 + -1.4 375,845 + -0.2 375,845 + -1.0 375,845 + +1.0 375,845 + +0.3 375,845 + -0.3 375,845 + +1.5 375,845 + +1.4 375,845 + +0.1 375,845 + -1.2 375,853 - +1.1 375,853 - +0.2 375,853 - +1.6 375,853 - +0.5 375,853 - +0.8 375,853 - -0.6 375,853 - -1.0 375,853 - +0.1 375,853 - +0.0 375,853 - -0.4 375,853 - +2.2 375,853 - +0.2 375,853 - -1.1 375,853 - -1.5 375,853 - +0.5 375,855 - +0.6 375,885 + +0.0 375,890 + +1.5 375,899 - -1.4
Or see this region's nucleotide sequence