Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00266

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00265 and CCNA_00266 are separated by 127 nucleotidesCCNA_00266 and CCNA_00267 are separated by 93 nucleotides CCNA_00265: CCNA_00265 - AMP nucleosidase, at 278,017 to 279,471 _00265 CCNA_00266: CCNA_00266 - 3-ketoacyl-CoA thiolase, at 279,599 to 280,837 _00266 CCNA_00267: CCNA_00267 - MutT-like protein, at 280,931 to 281,872 _00267 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2 3at 279.480 kb on - strandat 279.489 kb on - strandat 279.499 kb on - strandat 279.539 kb on - strandat 279.549 kb on - strandat 279.603 kb on - strandat 279.605 kb on - strandat 279.679 kb on + strandat 279.679 kb on + strandat 279.683 kb on - strandat 279.687 kb on - strandat 279.702 kb on - strandat 279.704 kb on + strandat 279.704 kb on + strandat 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.745 kb on - strand, within CCNA_00266at 279.745 kb on - strand, within CCNA_00266at 279.745 kb on - strand, within CCNA_00266at 279.763 kb on + strand, within CCNA_00266at 279.770 kb on - strand, within CCNA_00266at 279.770 kb on - strand, within CCNA_00266at 279.770 kb on - strand, within CCNA_00266at 279.792 kb on - strand, within CCNA_00266at 279.792 kb on - strand, within CCNA_00266at 279.852 kb on - strand, within CCNA_00266at 279.852 kb on - strand, within CCNA_00266at 279.894 kb on + strand, within CCNA_00266at 279.894 kb on + strand, within CCNA_00266at 279.894 kb on + strand, within CCNA_00266at 279.902 kb on - strand, within CCNA_00266at 279.919 kb on + strand, within CCNA_00266at 279.919 kb on + strand, within CCNA_00266at 279.941 kb on + strand, within CCNA_00266at 279.975 kb on - strand, within CCNA_00266at 279.983 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 280.001 kb on + strand, within CCNA_00266at 280.004 kb on - strand, within CCNA_00266at 280.033 kb on + strand, within CCNA_00266at 280.069 kb on - strand, within CCNA_00266at 280.080 kb on + strand, within CCNA_00266at 280.080 kb on + strand, within CCNA_00266at 280.088 kb on - strand, within CCNA_00266at 280.110 kb on - strand, within CCNA_00266at 280.111 kb on - strand, within CCNA_00266at 280.118 kb on - strand, within CCNA_00266at 280.169 kb on + strand, within CCNA_00266at 280.177 kb on - strand, within CCNA_00266at 280.177 kb on - strand, within CCNA_00266at 280.188 kb on + strand, within CCNA_00266at 280.188 kb on + strand, within CCNA_00266at 280.214 kb on + strand, within CCNA_00266at 280.214 kb on + strand, within CCNA_00266at 280.222 kb on - strand, within CCNA_00266at 280.243 kb on + strand, within CCNA_00266at 280.249 kb on + strand, within CCNA_00266at 280.296 kb on - strand, within CCNA_00266at 280.337 kb on + strand, within CCNA_00266at 280.345 kb on + strand, within CCNA_00266at 280.345 kb on - strand, within CCNA_00266at 280.345 kb on - strand, within CCNA_00266at 280.385 kb on - strand, within CCNA_00266at 280.414 kb on + strand, within CCNA_00266at 280.432 kb on - strand, within CCNA_00266at 280.464 kb on + strand, within CCNA_00266at 280.472 kb on - strand, within CCNA_00266at 280.501 kb on + strand, within CCNA_00266at 280.514 kb on + strand, within CCNA_00266at 280.537 kb on + strand, within CCNA_00266at 280.570 kb on + strand, within CCNA_00266at 280.576 kb on + strand, within CCNA_00266at 280.579 kb on - strand, within CCNA_00266at 280.579 kb on - strand, within CCNA_00266at 280.597 kb on + strand, within CCNA_00266at 280.605 kb on - strand, within CCNA_00266at 280.610 kb on + strand, within CCNA_00266at 280.633 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.695 kb on + strand, within CCNA_00266at 280.703 kb on - strand, within CCNA_00266at 280.724 kb on + strandat 280.732 kb on - strandat 280.732 kb on - strandat 280.732 kb on - strandat 280.784 kb on - strandat 280.784 kb on - strandat 280.794 kb on - strandat 280.820 kb on + strandat 280.829 kb on - strandat 280.846 kb on + strandat 280.846 kb on + strandat 280.846 kb on + strandat 280.854 kb on - strandat 280.856 kb on + strandat 280.898 kb on + strandat 280.905 kb on - strandat 280.918 kb on - strandat 280.920 kb on + strandat 280.920 kb on + strandat 280.920 kb on + strandat 280.920 kb on + strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.929 kb on + strandat 280.952 kb on - strandat 280.958 kb on - strandat 280.958 kb on - strandat 280.973 kb on + strandat 280.986 kb on + strandat 281.020 kb on + strandat 281.020 kb on + strandat 281.020 kb on + strandat 281.028 kb on - strand, within CCNA_00267at 281.028 kb on - strand, within CCNA_00267at 281.040 kb on - strand, within CCNA_00267at 281.046 kb on + strand, within CCNA_00267at 281.053 kb on - strand, within CCNA_00267at 281.061 kb on + strand, within CCNA_00267at 281.066 kb on + strand, within CCNA_00267at 281.067 kb on + strand, within CCNA_00267at 281.067 kb on + strand, within CCNA_00267at 281.069 kb on - strand, within CCNA_00267at 281.119 kb on + strand, within CCNA_00267at 281.122 kb on - strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.132 kb on - strand, within CCNA_00267at 281.133 kb on - strand, within CCNA_00267at 281.133 kb on - strand, within CCNA_00267at 281.136 kb on + strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.222 kb on - strand, within CCNA_00267at 281.246 kb on + strand, within CCNA_00267at 281.261 kb on - strand, within CCNA_00267at 281.261 kb on - strand, within CCNA_00267at 281.351 kb on + strand, within CCNA_00267at 281.378 kb on - strand, within CCNA_00267at 281.391 kb on - strand, within CCNA_00267at 281.408 kb on - strand, within CCNA_00267at 281.416 kb on - strand, within CCNA_00267at 281.421 kb on - strand, within CCNA_00267at 281.477 kb on - strand, within CCNA_00267at 281.532 kb on - strand, within CCNA_00267at 281.548 kb on - strand, within CCNA_00267at 281.548 kb on - strand, within CCNA_00267at 281.614 kb on + strand, within CCNA_00267at 281.619 kb on + strand, within CCNA_00267at 281.619 kb on + strand, within CCNA_00267at 281.622 kb on - strand, within CCNA_00267at 281.627 kb on - strand, within CCNA_00267at 281.627 kb on - strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.658 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.682 kb on - strand, within CCNA_00267at 281.684 kb on + strand, within CCNA_00267at 281.720 kb on - strand, within CCNA_00267at 281.729 kb on - strand, within CCNA_00267at 281.729 kb on - strand, within CCNA_00267at 281.787 kb on - strandat 281.800 kb on + strandat 281.825 kb on + strandat 281.825 kb on + strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.834 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
remove
279,480 - -1.2
279,489 - +1.2
279,499 - -0.0
279,539 - -0.2
279,549 - -0.6
279,603 - +0.6
279,605 - -0.4
279,679 + -0.7
279,679 + +0.6
279,683 - -1.0
279,687 - +3.7
279,702 - -0.3
279,704 + +0.0
279,704 + -1.2
279,737 + CCNA_00266 0.11 +1.5
279,737 + CCNA_00266 0.11 +0.8
279,737 + CCNA_00266 0.11 -0.6
279,737 + CCNA_00266 0.11 -0.4
279,737 + CCNA_00266 0.11 +0.9
279,745 - CCNA_00266 0.12 -1.2
279,745 - CCNA_00266 0.12 +0.8
279,745 - CCNA_00266 0.12 -0.6
279,763 + CCNA_00266 0.13 -0.6
279,770 - CCNA_00266 0.14 +0.5
279,770 - CCNA_00266 0.14 -0.3
279,770 - CCNA_00266 0.14 +1.2
279,792 - CCNA_00266 0.16 -0.0
279,792 - CCNA_00266 0.16 +0.2
279,852 - CCNA_00266 0.20 +0.9
279,852 - CCNA_00266 0.20 +0.5
279,894 + CCNA_00266 0.24 +3.0
279,894 + CCNA_00266 0.24 -0.1
279,894 + CCNA_00266 0.24 -1.2
279,902 - CCNA_00266 0.24 -1.8
279,919 + CCNA_00266 0.26 -0.7
279,919 + CCNA_00266 0.26 -0.2
279,941 + CCNA_00266 0.28 -0.6
279,975 - CCNA_00266 0.30 -0.5
279,983 - CCNA_00266 0.31 +1.9
279,993 - CCNA_00266 0.32 +0.5
279,993 - CCNA_00266 0.32 -1.9
279,993 - CCNA_00266 0.32 -0.0
280,001 + CCNA_00266 0.32 -0.0
280,004 - CCNA_00266 0.33 +0.4
280,033 + CCNA_00266 0.35 -2.1
280,069 - CCNA_00266 0.38 -0.3
280,080 + CCNA_00266 0.39 -2.6
280,080 + CCNA_00266 0.39 -0.6
280,088 - CCNA_00266 0.39 -2.1
280,110 - CCNA_00266 0.41 -1.2
280,111 - CCNA_00266 0.41 +1.8
280,118 - CCNA_00266 0.42 -1.7
280,169 + CCNA_00266 0.46 -0.5
280,177 - CCNA_00266 0.47 +2.2
280,177 - CCNA_00266 0.47 +0.3
280,188 + CCNA_00266 0.48 -0.5
280,188 + CCNA_00266 0.48 +1.2
280,214 + CCNA_00266 0.50 +0.2
280,214 + CCNA_00266 0.50 -1.4
280,222 - CCNA_00266 0.50 -1.3
280,243 + CCNA_00266 0.52 -0.1
280,249 + CCNA_00266 0.52 +0.3
280,296 - CCNA_00266 0.56 +1.4
280,337 + CCNA_00266 0.60 -1.7
280,345 + CCNA_00266 0.60 +0.7
280,345 - CCNA_00266 0.60 -2.3
280,345 - CCNA_00266 0.60 -0.0
280,385 - CCNA_00266 0.63 +0.8
280,414 + CCNA_00266 0.66 -1.9
280,432 - CCNA_00266 0.67 -2.1
280,464 + CCNA_00266 0.70 -1.5
280,472 - CCNA_00266 0.70 -1.1
280,501 + CCNA_00266 0.73 -2.0
280,514 + CCNA_00266 0.74 +1.6
280,537 + CCNA_00266 0.76 -0.1
280,570 + CCNA_00266 0.78 -0.7
280,576 + CCNA_00266 0.79 -0.0
280,579 - CCNA_00266 0.79 -0.3
280,579 - CCNA_00266 0.79 -0.8
280,597 + CCNA_00266 0.81 -0.4
280,605 - CCNA_00266 0.81 +1.5
280,610 + CCNA_00266 0.82 -1.8
280,633 + CCNA_00266 0.83 +1.0
280,657 + CCNA_00266 0.85 -0.6
280,657 + CCNA_00266 0.85 -1.3
280,657 + CCNA_00266 0.85 -0.0
280,657 + CCNA_00266 0.85 +1.1
280,657 + CCNA_00266 0.85 -0.3
280,657 + CCNA_00266 0.85 -0.7
280,665 - CCNA_00266 0.86 -1.2
280,665 - CCNA_00266 0.86 +0.4
280,665 - CCNA_00266 0.86 -1.6
280,665 - CCNA_00266 0.86 -0.8
280,695 + CCNA_00266 0.88 -0.7
280,703 - CCNA_00266 0.89 -0.4
280,724 + -0.8
280,732 - -2.0
280,732 - -1.2
280,732 - -0.8
280,784 - +0.9
280,784 - -0.7
280,794 - -0.9
280,820 + -0.9
280,829 - +1.8
280,846 + -1.5
280,846 + +1.0
280,846 + -0.9
280,854 - +0.4
280,856 + -1.6
280,898 + -1.0
280,905 - +2.1
280,918 - +3.5
280,920 + -1.2
280,920 + -0.6
280,920 + +0.2
280,920 + -0.3
280,928 - +1.1
280,928 - +1.3
280,928 - +1.9
280,928 - +0.6
280,928 - +0.4
280,928 - +1.3
280,929 + -0.9
280,952 - +1.5
280,958 - +0.4
280,958 - +1.6
280,973 + -2.1
280,986 + -2.0
281,020 + -0.4
281,020 + +1.4
281,020 + +0.0
281,028 - CCNA_00267 0.10 -0.4
281,028 - CCNA_00267 0.10 +2.2
281,040 - CCNA_00267 0.12 +2.1
281,046 + CCNA_00267 0.12 -1.7
281,053 - CCNA_00267 0.13 +3.0
281,061 + CCNA_00267 0.14 -1.2
281,066 + CCNA_00267 0.14 -0.8
281,067 + CCNA_00267 0.14 -1.3
281,067 + CCNA_00267 0.14 +0.4
281,069 - CCNA_00267 0.15 +1.8
281,119 + CCNA_00267 0.20 +0.0
281,122 - CCNA_00267 0.20 +1.4
281,124 + CCNA_00267 0.20 -1.6
281,124 + CCNA_00267 0.20 -1.5
281,124 + CCNA_00267 0.20 -0.8
281,124 + CCNA_00267 0.20 -0.4
281,132 - CCNA_00267 0.21 +0.4
281,133 - CCNA_00267 0.21 -0.5
281,133 - CCNA_00267 0.21 +1.1
281,136 + CCNA_00267 0.22 -0.6
281,143 - CCNA_00267 0.23 +1.5
281,143 - CCNA_00267 0.23 +1.2
281,143 - CCNA_00267 0.23 +1.1
281,143 - CCNA_00267 0.23 +2.0
281,222 - CCNA_00267 0.31 +0.5
281,246 + CCNA_00267 0.33 -1.6
281,261 - CCNA_00267 0.35 -0.6
281,261 - CCNA_00267 0.35 +1.1
281,351 + CCNA_00267 0.45 +0.8
281,378 - CCNA_00267 0.47 -0.9
281,391 - CCNA_00267 0.49 +1.1
281,408 - CCNA_00267 0.51 -0.9
281,416 - CCNA_00267 0.51 +2.2
281,421 - CCNA_00267 0.52 +2.2
281,477 - CCNA_00267 0.58 +1.1
281,532 - CCNA_00267 0.64 -0.9
281,548 - CCNA_00267 0.65 +0.5
281,548 - CCNA_00267 0.65 +0.7
281,614 + CCNA_00267 0.73 -2.1
281,619 + CCNA_00267 0.73 +0.4
281,619 + CCNA_00267 0.73 +1.0
281,622 - CCNA_00267 0.73 -2.0
281,627 - CCNA_00267 0.74 +0.1
281,627 - CCNA_00267 0.74 +0.4
281,651 + CCNA_00267 0.76 -0.3
281,651 + CCNA_00267 0.76 -1.8
281,651 + CCNA_00267 0.76 -0.5
281,651 + CCNA_00267 0.76 +1.5
281,651 + CCNA_00267 0.76 +0.1
281,651 + CCNA_00267 0.76 -1.6
281,658 - CCNA_00267 0.77 -0.5
281,659 - CCNA_00267 0.77 +0.6
281,659 - CCNA_00267 0.77 +0.3
281,659 - CCNA_00267 0.77 +0.7
281,659 - CCNA_00267 0.77 +1.0
281,682 - CCNA_00267 0.80 -1.1
281,684 + CCNA_00267 0.80 -1.0
281,720 - CCNA_00267 0.84 +1.6
281,729 - CCNA_00267 0.85 +1.2
281,729 - CCNA_00267 0.85 +1.3
281,787 - -0.8
281,800 + -1.0
281,825 + -1.4
281,825 + -1.7
281,833 - +1.3
281,833 - -0.9
281,833 - -0.6
281,833 - +0.6
281,833 - -2.3
281,833 - +0.1
281,833 - +0.5
281,833 - +0.5
281,834 - -1.3

Or see this region's nucleotide sequence