Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00178 and CCNA_00179 overlap by 4 nucleotides CCNA_00179 and CCNA_00180 overlap by 19 nucleotides CCNA_00180 and CCNA_00181 overlap by 4 nucleotides CCNA_00181 and CCNA_00182 overlap by 4 nucleotides
CCNA_00178: CCNA_00178 - type II secretion pathway protein J, at 192,305 to 192,895
_00178
CCNA_00179: CCNA_00179 - type II secretion pathway protein K, at 192,892 to 193,866
_00179
CCNA_00180: CCNA_00180 - type II secretion pathway protein L, at 193,848 to 194,954
_00180
CCNA_00181: CCNA_00181 - type II secretion pathway protein M, at 194,951 to 195,427
_00181
CCNA_00182: CCNA_00182 - type II secretion pathway protein N, at 195,424 to 196,140
_00182
Position (kb)
193
194
195 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 192.876 kb on + strand at 192.876 kb on + strand at 192.876 kb on - strand at 192.878 kb on - strand at 192.884 kb on - strand at 192.884 kb on - strand at 192.884 kb on - strand at 192.886 kb on + strand at 192.912 kb on - strand at 192.919 kb on + strand at 192.942 kb on - strand at 193.022 kb on + strand, within CCNA_00179 at 193.041 kb on - strand, within CCNA_00179 at 193.046 kb on - strand, within CCNA_00179 at 193.052 kb on + strand, within CCNA_00179 at 193.055 kb on - strand, within CCNA_00179 at 193.112 kb on - strand, within CCNA_00179 at 193.112 kb on - strand, within CCNA_00179 at 193.113 kb on - strand, within CCNA_00179 at 193.117 kb on - strand, within CCNA_00179 at 193.123 kb on - strand, within CCNA_00179 at 193.123 kb on - strand, within CCNA_00179 at 193.164 kb on + strand, within CCNA_00179 at 193.177 kb on - strand, within CCNA_00179 at 193.183 kb on - strand, within CCNA_00179 at 193.184 kb on - strand, within CCNA_00179 at 193.191 kb on - strand, within CCNA_00179 at 193.202 kb on + strand, within CCNA_00179 at 193.215 kb on - strand, within CCNA_00179 at 193.265 kb on + strand, within CCNA_00179 at 193.275 kb on + strand, within CCNA_00179 at 193.283 kb on - strand, within CCNA_00179 at 193.290 kb on - strand, within CCNA_00179 at 193.313 kb on + strand, within CCNA_00179 at 193.321 kb on - strand, within CCNA_00179 at 193.350 kb on + strand, within CCNA_00179 at 193.352 kb on + strand, within CCNA_00179 at 193.402 kb on + strand, within CCNA_00179 at 193.404 kb on - strand, within CCNA_00179 at 193.410 kb on - strand, within CCNA_00179 at 193.448 kb on - strand, within CCNA_00179 at 193.466 kb on + strand, within CCNA_00179 at 193.477 kb on + strand, within CCNA_00179 at 193.479 kb on + strand, within CCNA_00179 at 193.487 kb on - strand, within CCNA_00179 at 193.487 kb on - strand, within CCNA_00179 at 193.487 kb on - strand, within CCNA_00179 at 193.530 kb on - strand, within CCNA_00179 at 193.538 kb on - strand, within CCNA_00179 at 193.542 kb on + strand, within CCNA_00179 at 193.578 kb on - strand, within CCNA_00179 at 193.590 kb on - strand, within CCNA_00179 at 193.604 kb on + strand, within CCNA_00179 at 193.650 kb on - strand, within CCNA_00179 at 193.660 kb on + strand, within CCNA_00179 at 193.676 kb on - strand, within CCNA_00179 at 193.695 kb on - strand, within CCNA_00179 at 193.772 kb on - strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.796 kb on - strand at 193.845 kb on + strand at 193.853 kb on - strand at 193.866 kb on + strand at 193.867 kb on - strand at 193.878 kb on + strand at 193.878 kb on + strand at 193.920 kb on + strand at 193.925 kb on + strand at 193.927 kb on + strand at 193.927 kb on + strand at 193.927 kb on + strand at 193.927 kb on - strand at 193.933 kb on - strand at 193.933 kb on - strand at 193.933 kb on - strand at 193.935 kb on - strand at 193.947 kb on - strand at 193.955 kb on - strand at 193.982 kb on + strand, within CCNA_00180 at 193.990 kb on + strand, within CCNA_00180 at 193.994 kb on + strand, within CCNA_00180 at 194.032 kb on + strand, within CCNA_00180 at 194.040 kb on - strand, within CCNA_00180 at 194.053 kb on + strand, within CCNA_00180 at 194.058 kb on + strand, within CCNA_00180 at 194.066 kb on - strand, within CCNA_00180 at 194.066 kb on - strand, within CCNA_00180 at 194.098 kb on + strand, within CCNA_00180 at 194.118 kb on + strand, within CCNA_00180 at 194.161 kb on + strand, within CCNA_00180 at 194.163 kb on - strand, within CCNA_00180 at 194.168 kb on + strand, within CCNA_00180 at 194.168 kb on + strand, within CCNA_00180 at 194.168 kb on + strand, within CCNA_00180 at 194.176 kb on - strand, within CCNA_00180 at 194.178 kb on + strand, within CCNA_00180 at 194.186 kb on - strand, within CCNA_00180 at 194.190 kb on + strand, within CCNA_00180 at 194.198 kb on - strand, within CCNA_00180 at 194.198 kb on - strand, within CCNA_00180 at 194.198 kb on - strand, within CCNA_00180 at 194.211 kb on + strand, within CCNA_00180 at 194.211 kb on + strand, within CCNA_00180 at 194.211 kb on + strand, within CCNA_00180 at 194.211 kb on + strand, within CCNA_00180 at 194.219 kb on - strand, within CCNA_00180 at 194.219 kb on - strand, within CCNA_00180 at 194.219 kb on - strand, within CCNA_00180 at 194.219 kb on - strand, within CCNA_00180 at 194.219 kb on - strand, within CCNA_00180 at 194.269 kb on + strand, within CCNA_00180 at 194.277 kb on - strand, within CCNA_00180 at 194.283 kb on + strand, within CCNA_00180 at 194.335 kb on - strand, within CCNA_00180 at 194.335 kb on - strand, within CCNA_00180 at 194.390 kb on + strand, within CCNA_00180 at 194.399 kb on + strand, within CCNA_00180 at 194.403 kb on + strand, within CCNA_00180 at 194.456 kb on - strand, within CCNA_00180 at 194.510 kb on - strand, within CCNA_00180 at 194.540 kb on + strand, within CCNA_00180 at 194.546 kb on - strand, within CCNA_00180 at 194.548 kb on - strand, within CCNA_00180 at 194.638 kb on - strand, within CCNA_00180 at 194.640 kb on - strand, within CCNA_00180 at 194.671 kb on + strand, within CCNA_00180 at 194.671 kb on + strand, within CCNA_00180 at 194.677 kb on - strand, within CCNA_00180 at 194.679 kb on - strand, within CCNA_00180 at 194.719 kb on - strand, within CCNA_00180 at 194.752 kb on + strand, within CCNA_00180 at 194.758 kb on + strand, within CCNA_00180 at 194.777 kb on - strand, within CCNA_00180 at 194.779 kb on + strand, within CCNA_00180 at 194.779 kb on + strand, within CCNA_00180 at 194.779 kb on + strand, within CCNA_00180 at 194.787 kb on - strand, within CCNA_00180 at 194.787 kb on - strand, within CCNA_00180 at 194.787 kb on - strand, within CCNA_00180 at 194.847 kb on + strand at 194.869 kb on + strand at 194.875 kb on + strand at 194.883 kb on - strand at 194.907 kb on - strand at 194.918 kb on + strand at 194.948 kb on + strand at 194.949 kb on - strand at 194.956 kb on - strand at 194.962 kb on + strand at 194.962 kb on + strand at 194.962 kb on + strand at 194.962 kb on + strand at 195.048 kb on - strand, within CCNA_00181 at 195.057 kb on + strand, within CCNA_00181 at 195.088 kb on + strand, within CCNA_00181 at 195.111 kb on - strand, within CCNA_00181 at 195.111 kb on - strand, within CCNA_00181 at 195.111 kb on - strand, within CCNA_00181 at 195.130 kb on + strand, within CCNA_00181 at 195.138 kb on - strand, within CCNA_00181 at 195.210 kb on - strand, within CCNA_00181 at 195.273 kb on - strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.313 kb on - strand, within CCNA_00181 at 195.318 kb on - strand, within CCNA_00181 at 195.331 kb on - strand, within CCNA_00181 at 195.358 kb on - strand, within CCNA_00181 at 195.388 kb on + strand at 195.396 kb on - strand at 195.396 kb on - strand at 195.408 kb on - strand at 195.442 kb on - strand at 195.464 kb on + strand at 195.468 kb on + strand at 195.475 kb on + strand at 195.524 kb on + strand, within CCNA_00182 at 195.524 kb on + strand, within CCNA_00182 at 195.529 kb on - strand, within CCNA_00182 at 195.530 kb on - strand, within CCNA_00182 at 195.547 kb on - strand, within CCNA_00182 at 195.549 kb on - strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.573 kb on + strand, within CCNA_00182 at 195.573 kb on + strand, within CCNA_00182 at 195.573 kb on + strand, within CCNA_00182 at 195.581 kb on - strand, within CCNA_00182 at 195.631 kb on - strand, within CCNA_00182 at 195.636 kb on + strand, within CCNA_00182 at 195.640 kb on - strand, within CCNA_00182 at 195.654 kb on + strand, within CCNA_00182 at 195.672 kb on - strand, within CCNA_00182 at 195.683 kb on - strand, within CCNA_00182 at 195.696 kb on + strand, within CCNA_00182 at 195.711 kb on - strand, within CCNA_00182 at 195.757 kb on + strand, within CCNA_00182 at 195.757 kb on + strand, within CCNA_00182 at 195.757 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.825 kb on + strand, within CCNA_00182 at 195.825 kb on + strand, within CCNA_00182 at 195.882 kb on + strand, within CCNA_00182 at 195.892 kb on + strand, within CCNA_00182 at 195.892 kb on + strand, within CCNA_00182 at 195.914 kb on - strand, within CCNA_00182 at 195.916 kb on + strand, within CCNA_00182 at 195.937 kb on - strand, within CCNA_00182
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 192,876 + -1.7 192,876 + -0.2 192,876 - -2.2 192,878 - -0.8 192,884 - -0.8 192,884 - +0.3 192,884 - -0.7 192,886 + +0.2 192,912 - -0.7 192,919 + +0.6 192,942 - -0.4 193,022 + CCNA_00179 0.13 +1.2 193,041 - CCNA_00179 0.15 -1.0 193,046 - CCNA_00179 0.16 -0.9 193,052 + CCNA_00179 0.16 -0.4 193,055 - CCNA_00179 0.17 +1.0 193,112 - CCNA_00179 0.23 -0.2 193,112 - CCNA_00179 0.23 -1.4 193,113 - CCNA_00179 0.23 +0.1 193,117 - CCNA_00179 0.23 -1.9 193,123 - CCNA_00179 0.24 -0.4 193,123 - CCNA_00179 0.24 -1.9 193,164 + CCNA_00179 0.28 +1.0 193,177 - CCNA_00179 0.29 -0.7 193,183 - CCNA_00179 0.30 +0.5 193,184 - CCNA_00179 0.30 -0.4 193,191 - CCNA_00179 0.31 +1.2 193,202 + CCNA_00179 0.32 -1.2 193,215 - CCNA_00179 0.33 -1.0 193,265 + CCNA_00179 0.38 -0.8 193,275 + CCNA_00179 0.39 -0.8 193,283 - CCNA_00179 0.40 +0.0 193,290 - CCNA_00179 0.41 +1.4 193,313 + CCNA_00179 0.43 -0.9 193,321 - CCNA_00179 0.44 -0.3 193,350 + CCNA_00179 0.47 +2.5 193,352 + CCNA_00179 0.47 +2.4 193,402 + CCNA_00179 0.52 -2.8 193,404 - CCNA_00179 0.53 -2.0 193,410 - CCNA_00179 0.53 -1.0 193,448 - CCNA_00179 0.57 -0.1 193,466 + CCNA_00179 0.59 -0.4 193,477 + CCNA_00179 0.60 +0.4 193,479 + CCNA_00179 0.60 -1.1 193,487 - CCNA_00179 0.61 -0.4 193,487 - CCNA_00179 0.61 -1.0 193,487 - CCNA_00179 0.61 -0.9 193,530 - CCNA_00179 0.65 +0.4 193,538 - CCNA_00179 0.66 +3.0 193,542 + CCNA_00179 0.67 +0.8 193,578 - CCNA_00179 0.70 -1.2 193,590 - CCNA_00179 0.72 +2.2 193,604 + CCNA_00179 0.73 -1.4 193,650 - CCNA_00179 0.78 -0.1 193,660 + CCNA_00179 0.79 +0.4 193,676 - CCNA_00179 0.80 -1.5 193,695 - CCNA_00179 0.82 -1.4 193,772 - -1.1 193,788 + -0.3 193,788 + -0.2 193,796 - +0.4 193,845 + +1.5 193,853 - -1.0 193,866 + +0.4 193,867 - +0.0 193,878 + +0.3 193,878 + +0.2 193,920 + -0.9 193,925 + -0.6 193,927 + -1.1 193,927 + -1.0 193,927 + -0.1 193,927 - -0.8 193,933 - +0.6 193,933 - -0.5 193,933 - -0.9 193,935 - -2.0 193,947 - +0.1 193,955 - +1.2 193,982 + CCNA_00180 0.12 -0.3 193,990 + CCNA_00180 0.13 +0.2 193,994 + CCNA_00180 0.13 -0.1 194,032 + CCNA_00180 0.17 -0.9 194,040 - CCNA_00180 0.17 -1.4 194,053 + CCNA_00180 0.19 +0.5 194,058 + CCNA_00180 0.19 -1.5 194,066 - CCNA_00180 0.20 +0.4 194,066 - CCNA_00180 0.20 -0.4 194,098 + CCNA_00180 0.23 -0.3 194,118 + CCNA_00180 0.24 -1.0 194,161 + CCNA_00180 0.28 +1.5 194,163 - CCNA_00180 0.28 -2.1 194,168 + CCNA_00180 0.29 -1.0 194,168 + CCNA_00180 0.29 +0.4 194,168 + CCNA_00180 0.29 +0.7 194,176 - CCNA_00180 0.30 +2.2 194,178 + CCNA_00180 0.30 +1.3 194,186 - CCNA_00180 0.31 -0.5 194,190 + CCNA_00180 0.31 -0.0 194,198 - CCNA_00180 0.32 -1.9 194,198 - CCNA_00180 0.32 -2.1 194,198 - CCNA_00180 0.32 +0.6 194,211 + CCNA_00180 0.33 +0.9 194,211 + CCNA_00180 0.33 -1.6 194,211 + CCNA_00180 0.33 +1.8 194,211 + CCNA_00180 0.33 -1.6 194,219 - CCNA_00180 0.34 +0.7 194,219 - CCNA_00180 0.34 +0.5 194,219 - CCNA_00180 0.34 -1.3 194,219 - CCNA_00180 0.34 -0.1 194,219 - CCNA_00180 0.34 -1.7 194,269 + CCNA_00180 0.38 +0.1 194,277 - CCNA_00180 0.39 -1.4 194,283 + CCNA_00180 0.39 -1.6 194,335 - CCNA_00180 0.44 -0.6 194,335 - CCNA_00180 0.44 -1.4 194,390 + CCNA_00180 0.49 +0.1 194,399 + CCNA_00180 0.50 +0.4 194,403 + CCNA_00180 0.50 -0.1 194,456 - CCNA_00180 0.55 +0.0 194,510 - CCNA_00180 0.60 -1.0 194,540 + CCNA_00180 0.63 -1.7 194,546 - CCNA_00180 0.63 +0.5 194,548 - CCNA_00180 0.63 +0.8 194,638 - CCNA_00180 0.71 +1.2 194,640 - CCNA_00180 0.72 -0.6 194,671 + CCNA_00180 0.74 -0.9 194,671 + CCNA_00180 0.74 +0.8 194,677 - CCNA_00180 0.75 -0.9 194,679 - CCNA_00180 0.75 +2.0 194,719 - CCNA_00180 0.79 +0.6 194,752 + CCNA_00180 0.82 +0.2 194,758 + CCNA_00180 0.82 -1.7 194,777 - CCNA_00180 0.84 -1.5 194,779 + CCNA_00180 0.84 -0.8 194,779 + CCNA_00180 0.84 -1.7 194,779 + CCNA_00180 0.84 -0.4 194,787 - CCNA_00180 0.85 -0.5 194,787 - CCNA_00180 0.85 +0.4 194,787 - CCNA_00180 0.85 -1.0 194,847 + +1.5 194,869 + -1.8 194,875 + +1.6 194,883 - -1.6 194,907 - -1.9 194,918 + -1.5 194,948 + -0.4 194,949 - -0.1 194,956 - -0.1 194,962 + +0.1 194,962 + -1.1 194,962 + -1.7 194,962 + +1.0 195,048 - CCNA_00181 0.20 -1.5 195,057 + CCNA_00181 0.22 -1.3 195,088 + CCNA_00181 0.29 -0.2 195,111 - CCNA_00181 0.34 -0.7 195,111 - CCNA_00181 0.34 +0.6 195,111 - CCNA_00181 0.34 -1.0 195,130 + CCNA_00181 0.38 +0.0 195,138 - CCNA_00181 0.39 -0.3 195,210 - CCNA_00181 0.54 -1.5 195,273 - CCNA_00181 0.68 +0.5 195,310 + CCNA_00181 0.75 +0.0 195,310 + CCNA_00181 0.75 +0.1 195,310 + CCNA_00181 0.75 -0.1 195,310 + CCNA_00181 0.75 +0.5 195,313 - CCNA_00181 0.76 -0.7 195,318 - CCNA_00181 0.77 +0.9 195,331 - CCNA_00181 0.80 -1.4 195,358 - CCNA_00181 0.85 -0.9 195,388 + -0.3 195,396 - -2.3 195,396 - -1.6 195,408 - -0.1 195,442 - -0.9 195,464 + +0.8 195,468 + +1.0 195,475 + -2.1 195,524 + CCNA_00182 0.14 -2.5 195,524 + CCNA_00182 0.14 -2.9 195,529 - CCNA_00182 0.15 +1.2 195,530 - CCNA_00182 0.15 +0.2 195,547 - CCNA_00182 0.17 -2.4 195,549 - CCNA_00182 0.17 -1.2 195,558 + CCNA_00182 0.19 -1.5 195,558 + CCNA_00182 0.19 -0.9 195,558 + CCNA_00182 0.19 -1.2 195,558 + CCNA_00182 0.19 -1.8 195,558 + CCNA_00182 0.19 -0.7 195,558 + CCNA_00182 0.19 +0.5 195,558 + CCNA_00182 0.19 +1.0 195,558 + CCNA_00182 0.19 -2.4 195,566 - CCNA_00182 0.20 -2.2 195,566 - CCNA_00182 0.20 -1.2 195,566 - CCNA_00182 0.20 -1.2 195,566 - CCNA_00182 0.20 -1.4 195,573 + CCNA_00182 0.21 -2.3 195,573 + CCNA_00182 0.21 -1.8 195,573 + CCNA_00182 0.21 -0.9 195,581 - CCNA_00182 0.22 -1.9 195,631 - CCNA_00182 0.29 -0.6 195,636 + CCNA_00182 0.30 +0.2 195,640 - CCNA_00182 0.30 -0.2 195,654 + CCNA_00182 0.32 +0.2 195,672 - CCNA_00182 0.35 +0.2 195,683 - CCNA_00182 0.36 -0.7 195,696 + CCNA_00182 0.38 +1.0 195,711 - CCNA_00182 0.40 -0.2 195,757 + CCNA_00182 0.46 -0.1 195,757 + CCNA_00182 0.46 +1.4 195,757 + CCNA_00182 0.46 -0.1 195,758 + CCNA_00182 0.47 -2.1 195,758 + CCNA_00182 0.47 +0.8 195,758 + CCNA_00182 0.47 -0.0 195,758 + CCNA_00182 0.47 -0.3 195,765 - CCNA_00182 0.48 -1.4 195,765 - CCNA_00182 0.48 +2.4 195,765 - CCNA_00182 0.48 -0.6 195,765 - CCNA_00182 0.48 -0.7 195,765 - CCNA_00182 0.48 -1.6 195,765 - CCNA_00182 0.48 -0.8 195,765 - CCNA_00182 0.48 -1.5 195,825 + CCNA_00182 0.56 -1.4 195,825 + CCNA_00182 0.56 -0.9 195,882 + CCNA_00182 0.64 -1.7 195,892 + CCNA_00182 0.65 +0.0 195,892 + CCNA_00182 0.65 +0.9 195,914 - CCNA_00182 0.68 +0.0 195,916 + CCNA_00182 0.69 +0.9 195,937 - CCNA_00182 0.72 -0.5
Or see this region's nucleotide sequence