Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS17695 and ABZR86_RS17700 are separated by 71 nucleotides ABZR86_RS17700 and ABZR86_RS17705 are separated by 23 nucleotides ABZR86_RS17705 and ABZR86_RS17710 are separated by 1 nucleotides ABZR86_RS17710 and ABZR86_RS17715 are separated by 134 nucleotides
ABZR86_RS17695: ABZR86_RS17695 - MerR family DNA-binding protein, at 3,992,794 to 3,993,222
_RS17695
ABZR86_RS17700: ABZR86_RS17700 - oxidoreductase, at 3,993,294 to 3,994,127
_RS17700
ABZR86_RS17705: ABZR86_RS17705 - ATP-binding protein, at 3,994,151 to 3,995,203
_RS17705
ABZR86_RS17710: ABZR86_RS17710 - response regulator transcription factor, at 3,995,205 to 3,995,900
_RS17710
ABZR86_RS17715: ABZR86_RS17715 - efflux transporter outer membrane subunit, at 3,996,035 to 3,997,492
_RS17715
Position (kb)
3994
3995
3996 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3993.165 kb on - strand, within ABZR86_RS17695 at 3993.308 kb on - strand at 3993.372 kb on + strand at 3993.372 kb on + strand at 3993.372 kb on + strand at 3993.373 kb on - strand at 3993.373 kb on - strand at 3993.373 kb on - strand at 3993.381 kb on + strand, within ABZR86_RS17700 at 3993.540 kb on + strand, within ABZR86_RS17700 at 3993.540 kb on + strand, within ABZR86_RS17700 at 3993.550 kb on - strand, within ABZR86_RS17700 at 3993.550 kb on - strand, within ABZR86_RS17700 at 3993.627 kb on - strand, within ABZR86_RS17700 at 3993.727 kb on - strand, within ABZR86_RS17700 at 3994.153 kb on - strand at 3994.153 kb on - strand at 3994.808 kb on + strand, within ABZR86_RS17705 at 3994.808 kb on + strand, within ABZR86_RS17705 at 3994.986 kb on + strand, within ABZR86_RS17705 at 3994.987 kb on - strand, within ABZR86_RS17705 at 3995.099 kb on - strand at 3995.099 kb on - strand at 3995.113 kb on - strand at 3995.113 kb on - strand at 3995.135 kb on + strand at 3995.224 kb on + strand at 3995.225 kb on - strand at 3995.478 kb on + strand, within ABZR86_RS17710 at 3995.478 kb on + strand, within ABZR86_RS17710 at 3995.478 kb on + strand, within ABZR86_RS17710 at 3995.479 kb on - strand, within ABZR86_RS17710 at 3995.479 kb on - strand, within ABZR86_RS17710 at 3995.479 kb on - strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.609 kb on - strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.842 kb on + strand at 3995.843 kb on - strand at 3995.910 kb on - strand at 3995.963 kb on + strand at 3995.999 kb on + strand at 3996.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,993,165 - ABZR86_RS17695 0.86 +1.0 3,993,308 - -0.1 3,993,372 + +0.2 3,993,372 + +0.1 3,993,372 + -0.4 3,993,373 - +1.4 3,993,373 - -0.3 3,993,373 - -0.3 3,993,381 + ABZR86_RS17700 0.10 -0.8 3,993,540 + ABZR86_RS17700 0.29 +0.4 3,993,540 + ABZR86_RS17700 0.29 -1.8 3,993,550 - ABZR86_RS17700 0.31 +0.1 3,993,550 - ABZR86_RS17700 0.31 +1.4 3,993,627 - ABZR86_RS17700 0.40 +0.6 3,993,727 - ABZR86_RS17700 0.52 -0.7 3,994,153 - -0.1 3,994,153 - -1.9 3,994,808 + ABZR86_RS17705 0.62 +0.4 3,994,808 + ABZR86_RS17705 0.62 -0.2 3,994,986 + ABZR86_RS17705 0.79 +0.4 3,994,987 - ABZR86_RS17705 0.79 +0.6 3,995,099 - -2.2 3,995,099 - +0.5 3,995,113 - +0.2 3,995,113 - -0.4 3,995,135 + +1.2 3,995,224 + -0.9 3,995,225 - +0.0 3,995,478 + ABZR86_RS17710 0.39 +1.3 3,995,478 + ABZR86_RS17710 0.39 -0.9 3,995,478 + ABZR86_RS17710 0.39 -0.7 3,995,479 - ABZR86_RS17710 0.39 +0.9 3,995,479 - ABZR86_RS17710 0.39 -0.0 3,995,479 - ABZR86_RS17710 0.39 +0.0 3,995,608 + ABZR86_RS17710 0.58 -0.0 3,995,608 + ABZR86_RS17710 0.58 -0.0 3,995,608 + ABZR86_RS17710 0.58 +0.8 3,995,608 + ABZR86_RS17710 0.58 -1.3 3,995,609 - ABZR86_RS17710 0.58 -0.2 3,995,817 + ABZR86_RS17710 0.88 +0.1 3,995,817 + ABZR86_RS17710 0.88 +0.8 3,995,817 + ABZR86_RS17710 0.88 +0.1 3,995,817 + ABZR86_RS17710 0.88 +2.2 3,995,817 + ABZR86_RS17710 0.88 +0.2 3,995,817 + ABZR86_RS17710 0.88 +0.5 3,995,817 + ABZR86_RS17710 0.88 +0.2 3,995,818 - ABZR86_RS17710 0.88 +0.2 3,995,818 - ABZR86_RS17710 0.88 +0.2 3,995,818 - ABZR86_RS17710 0.88 +0.7 3,995,818 - ABZR86_RS17710 0.88 +0.3 3,995,818 - ABZR86_RS17710 0.88 -0.2 3,995,842 + +0.3 3,995,843 - +0.6 3,995,910 - -0.2 3,995,963 + -1.4 3,995,999 + +0.4 3,996,000 - +0.1
Or see this region's nucleotide sequence