Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14590 and ABZR86_RS14595 overlap by 4 nucleotides ABZR86_RS14595 and ABZR86_RS14600 are separated by 76 nucleotides ABZR86_RS14600 and ABZR86_RS14605 are separated by 1 nucleotides
ABZR86_RS14590: ABZR86_RS14590 - autotransporter outer membrane beta-barrel domain-containing protein, at 3,265,164 to 3,266,177
_RS14590
ABZR86_RS14595: ABZR86_RS14595 - hypothetical protein, at 3,266,174 to 3,266,641
_RS14595
ABZR86_RS14600: ABZR86_RS14600 - conjugative transfer signal peptidase TraF, at 3,266,718 to 3,267,305
_RS14600
ABZR86_RS14605: ABZR86_RS14605 - fimbrial protein, at 3,267,307 to 3,268,296
_RS14605
Position (kb) 3266
3267 Strain fitness (log2 ratio) -1
0
1
2 at 3265.249 kb on + strand at 3265.249 kb on + strand at 3265.402 kb on + strand, within ABZR86_RS14590 at 3265.402 kb on + strand, within ABZR86_RS14590 at 3265.402 kb on + strand, within ABZR86_RS14590 at 3265.403 kb on - strand, within ABZR86_RS14590 at 3265.403 kb on - strand, within ABZR86_RS14590 at 3265.469 kb on + strand, within ABZR86_RS14590 at 3265.503 kb on - strand, within ABZR86_RS14590 at 3265.503 kb on - strand, within ABZR86_RS14590 at 3265.517 kb on - strand, within ABZR86_RS14590 at 3265.653 kb on + strand, within ABZR86_RS14590 at 3265.670 kb on - strand, within ABZR86_RS14590 at 3265.697 kb on - strand, within ABZR86_RS14590 at 3265.697 kb on - strand, within ABZR86_RS14590 at 3265.816 kb on + strand, within ABZR86_RS14590 at 3266.094 kb on + strand at 3266.094 kb on + strand at 3266.524 kb on + strand, within ABZR86_RS14595 at 3266.524 kb on + strand, within ABZR86_RS14595 at 3266.524 kb on + strand, within ABZR86_RS14595 at 3266.616 kb on - strand at 3266.661 kb on + strand at 3266.662 kb on - strand at 3266.804 kb on - strand, within ABZR86_RS14600 at 3266.848 kb on - strand, within ABZR86_RS14600 at 3266.848 kb on - strand, within ABZR86_RS14600 at 3267.115 kb on + strand, within ABZR86_RS14600 at 3267.115 kb on + strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.178 kb on + strand, within ABZR86_RS14600 at 3267.178 kb on + strand, within ABZR86_RS14600 at 3267.179 kb on - strand, within ABZR86_RS14600 at 3267.398 kb on + strand at 3267.411 kb on + strand, within ABZR86_RS14605 at 3267.411 kb on + strand, within ABZR86_RS14605 at 3267.415 kb on + strand, within ABZR86_RS14605 at 3267.416 kb on - strand, within ABZR86_RS14605 at 3267.416 kb on - strand, within ABZR86_RS14605 at 3267.513 kb on + strand, within ABZR86_RS14605 at 3267.513 kb on + strand, within ABZR86_RS14605 at 3267.513 kb on + strand, within ABZR86_RS14605 at 3267.514 kb on - strand, within ABZR86_RS14605 at 3267.515 kb on + strand, within ABZR86_RS14605 at 3267.515 kb on + strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,265,249 + -0.6 3,265,249 + +0.3 3,265,402 + ABZR86_RS14590 0.23 -1.0 3,265,402 + ABZR86_RS14590 0.23 -0.6 3,265,402 + ABZR86_RS14590 0.23 -0.3 3,265,403 - ABZR86_RS14590 0.24 -0.0 3,265,403 - ABZR86_RS14590 0.24 +1.6 3,265,469 + ABZR86_RS14590 0.30 +0.8 3,265,503 - ABZR86_RS14590 0.33 -0.4 3,265,503 - ABZR86_RS14590 0.33 -0.8 3,265,517 - ABZR86_RS14590 0.35 +0.2 3,265,653 + ABZR86_RS14590 0.48 -1.2 3,265,670 - ABZR86_RS14590 0.50 +0.6 3,265,697 - ABZR86_RS14590 0.53 +0.5 3,265,697 - ABZR86_RS14590 0.53 -0.7 3,265,816 + ABZR86_RS14590 0.64 +0.2 3,266,094 + +0.1 3,266,094 + +0.6 3,266,524 + ABZR86_RS14595 0.75 +0.2 3,266,524 + ABZR86_RS14595 0.75 +1.2 3,266,524 + ABZR86_RS14595 0.75 -0.3 3,266,616 - +0.5 3,266,661 + -0.8 3,266,662 - -0.1 3,266,804 - ABZR86_RS14600 0.15 -0.2 3,266,848 - ABZR86_RS14600 0.22 +0.7 3,266,848 - ABZR86_RS14600 0.22 +0.1 3,267,115 + ABZR86_RS14600 0.68 -1.5 3,267,115 + ABZR86_RS14600 0.68 +0.4 3,267,116 - ABZR86_RS14600 0.68 +0.5 3,267,116 - ABZR86_RS14600 0.68 +0.6 3,267,116 - ABZR86_RS14600 0.68 +0.4 3,267,116 - ABZR86_RS14600 0.68 -0.2 3,267,178 + ABZR86_RS14600 0.78 +0.1 3,267,178 + ABZR86_RS14600 0.78 +1.8 3,267,179 - ABZR86_RS14600 0.78 -0.2 3,267,398 + +0.7 3,267,411 + ABZR86_RS14605 0.11 -0.5 3,267,411 + ABZR86_RS14605 0.11 +0.4 3,267,415 + ABZR86_RS14605 0.11 +0.3 3,267,416 - ABZR86_RS14605 0.11 +0.2 3,267,416 - ABZR86_RS14605 0.11 -0.8 3,267,513 + ABZR86_RS14605 0.21 -0.6 3,267,513 + ABZR86_RS14605 0.21 -0.4 3,267,513 + ABZR86_RS14605 0.21 -0.0 3,267,514 - ABZR86_RS14605 0.21 -0.3 3,267,515 + ABZR86_RS14605 0.21 +0.6 3,267,515 + ABZR86_RS14605 0.21 +2.2 3,267,516 - ABZR86_RS14605 0.21 +1.0 3,267,516 - ABZR86_RS14605 0.21 +0.4 3,267,516 - ABZR86_RS14605 0.21 +0.3 3,267,516 - ABZR86_RS14605 0.21 +0.9
Or see this region's nucleotide sequence