Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13675

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13665 and ABZR86_RS13670 are separated by 95 nucleotidesABZR86_RS13670 and ABZR86_RS13675 are separated by 100 nucleotidesABZR86_RS13675 and ABZR86_RS13680 are separated by 8 nucleotidesABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotides ABZR86_RS13665: ABZR86_RS13665 - DUF2974 domain-containing protein, at 3,054,202 to 3,055,182 _RS13665 ABZR86_RS13670: ABZR86_RS13670 - ankyrin repeat domain-containing protein, at 3,055,278 to 3,056,033 _RS13670 ABZR86_RS13675: ABZR86_RS13675 - LysM domain-containing protein, at 3,056,134 to 3,057,501 _RS13675 ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220 _RS13680 ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716 _RS13685 Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -1 0 1 2at 3055.233 kb on + strandat 3055.234 kb on - strandat 3055.234 kb on - strandat 3055.390 kb on + strand, within ABZR86_RS13670at 3055.457 kb on + strand, within ABZR86_RS13670at 3055.458 kb on - strand, within ABZR86_RS13670at 3055.648 kb on - strand, within ABZR86_RS13670at 3055.920 kb on + strand, within ABZR86_RS13670at 3055.920 kb on + strand, within ABZR86_RS13670at 3055.920 kb on + strand, within ABZR86_RS13670at 3055.920 kb on + strand, within ABZR86_RS13670at 3055.921 kb on - strand, within ABZR86_RS13670at 3055.921 kb on - strand, within ABZR86_RS13670at 3056.031 kb on + strandat 3056.032 kb on - strandat 3056.042 kb on + strandat 3056.043 kb on - strandat 3056.043 kb on - strandat 3056.043 kb on - strandat 3056.162 kb on + strandat 3056.163 kb on - strandat 3056.163 kb on - strandat 3057.927 kb on - strand, within ABZR86_RS13680at 3058.163 kb on + strandat 3058.163 kb on + strandat 3058.163 kb on + strandat 3058.169 kb on + strandat 3058.169 kb on + strandat 3058.169 kb on + strandat 3058.170 kb on - strandat 3058.170 kb on - strandat 3058.221 kb on - strandat 3058.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,055,233 + -0.1
3,055,234 - +0.5
3,055,234 - -0.8
3,055,390 + ABZR86_RS13670 0.15 +0.2
3,055,457 + ABZR86_RS13670 0.24 +0.4
3,055,458 - ABZR86_RS13670 0.24 -0.4
3,055,648 - ABZR86_RS13670 0.49 -0.1
3,055,920 + ABZR86_RS13670 0.85 -0.2
3,055,920 + ABZR86_RS13670 0.85 +0.3
3,055,920 + ABZR86_RS13670 0.85 -0.2
3,055,920 + ABZR86_RS13670 0.85 +0.3
3,055,921 - ABZR86_RS13670 0.85 +0.6
3,055,921 - ABZR86_RS13670 0.85 -1.0
3,056,031 + -0.7
3,056,032 - -0.2
3,056,042 + +1.8
3,056,043 - -0.6
3,056,043 - -0.5
3,056,043 - +0.3
3,056,162 + +1.3
3,056,163 - +0.3
3,056,163 - +0.7
3,057,927 - ABZR86_RS13680 0.59 +0.5
3,058,163 + +0.3
3,058,163 + +0.4
3,058,163 + +0.1
3,058,169 + +0.0
3,058,169 + +0.4
3,058,169 + +0.1
3,058,170 - -0.0
3,058,170 - -0.2
3,058,221 - +0.3
3,058,221 - +0.3

Or see this region's nucleotide sequence