Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS12845

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS12835 and ABZR86_RS12840 are separated by 4 nucleotidesABZR86_RS12840 and ABZR86_RS12845 are separated by 9 nucleotidesABZR86_RS12845 and ABZR86_RS12850 are separated by 169 nucleotides ABZR86_RS12835: ABZR86_RS12835 - DedA family protein, at 2,875,245 to 2,875,874 _RS12835 ABZR86_RS12840: ABZR86_RS12840 - pentapeptide repeat-containing protein, at 2,875,879 to 2,876,478 _RS12840 ABZR86_RS12845: ABZR86_RS12845 - GNAT family N-acetyltransferase, at 2,876,488 to 2,876,949 _RS12845 ABZR86_RS12850: ABZR86_RS12850 - serine hydrolase domain-containing protein, at 2,877,119 to 2,878,348 _RS12850 Position (kb) 2876 2877Strain fitness (log2 ratio) -2 -1 0 1 2at 2875.530 kb on + strand, within ABZR86_RS12835at 2875.560 kb on + strand, within ABZR86_RS12835at 2875.617 kb on + strand, within ABZR86_RS12835at 2875.617 kb on + strand, within ABZR86_RS12835at 2875.617 kb on + strand, within ABZR86_RS12835at 2875.618 kb on - strand, within ABZR86_RS12835at 2875.618 kb on - strand, within ABZR86_RS12835at 2875.618 kb on - strand, within ABZR86_RS12835at 2875.618 kb on - strand, within ABZR86_RS12835at 2875.710 kb on + strand, within ABZR86_RS12835at 2875.719 kb on + strand, within ABZR86_RS12835at 2876.377 kb on + strand, within ABZR86_RS12840at 2876.378 kb on - strand, within ABZR86_RS12840at 2876.476 kb on + strandat 2876.476 kb on + strandat 2876.530 kb on + strandat 2876.531 kb on - strandat 2876.561 kb on - strand, within ABZR86_RS12845at 2876.561 kb on - strand, within ABZR86_RS12845at 2876.561 kb on - strand, within ABZR86_RS12845at 2876.561 kb on - strand, within ABZR86_RS12845at 2876.572 kb on + strand, within ABZR86_RS12845at 2876.573 kb on - strand, within ABZR86_RS12845at 2876.573 kb on - strand, within ABZR86_RS12845at 2876.704 kb on + strand, within ABZR86_RS12845at 2876.704 kb on + strand, within ABZR86_RS12845at 2876.704 kb on + strand, within ABZR86_RS12845at 2876.704 kb on + strand, within ABZR86_RS12845at 2876.705 kb on - strand, within ABZR86_RS12845at 2876.705 kb on - strand, within ABZR86_RS12845at 2876.705 kb on - strand, within ABZR86_RS12845at 2876.705 kb on - strand, within ABZR86_RS12845at 2876.705 kb on - strand, within ABZR86_RS12845at 2876.819 kb on - strand, within ABZR86_RS12845at 2876.855 kb on - strand, within ABZR86_RS12845at 2876.855 kb on - strand, within ABZR86_RS12845at 2876.896 kb on + strand, within ABZR86_RS12845at 2876.896 kb on + strand, within ABZR86_RS12845at 2876.896 kb on + strand, within ABZR86_RS12845at 2876.897 kb on - strand, within ABZR86_RS12845at 2876.897 kb on - strand, within ABZR86_RS12845at 2876.932 kb on + strandat 2876.932 kb on + strandat 2876.932 kb on + strandat 2876.932 kb on + strandat 2876.933 kb on - strandat 2877.071 kb on - strandat 2877.076 kb on - strandat 2877.076 kb on - strandat 2877.363 kb on - strand, within ABZR86_RS12850at 2877.407 kb on + strand, within ABZR86_RS12850at 2877.407 kb on + strand, within ABZR86_RS12850at 2877.552 kb on - strand, within ABZR86_RS12850at 2877.552 kb on - strand, within ABZR86_RS12850at 2877.623 kb on + strand, within ABZR86_RS12850at 2877.624 kb on - strand, within ABZR86_RS12850at 2877.635 kb on + strand, within ABZR86_RS12850at 2877.636 kb on - strand, within ABZR86_RS12850at 2877.636 kb on - strand, within ABZR86_RS12850at 2877.686 kb on + strand, within ABZR86_RS12850at 2877.686 kb on + strand, within ABZR86_RS12850at 2877.686 kb on + strand, within ABZR86_RS12850at 2877.687 kb on - strand, within ABZR86_RS12850at 2877.687 kb on - strand, within ABZR86_RS12850at 2877.687 kb on - strand, within ABZR86_RS12850at 2877.687 kb on - strand, within ABZR86_RS12850at 2877.687 kb on - strand, within ABZR86_RS12850at 2877.687 kb on - strand, within ABZR86_RS12850at 2877.710 kb on + strand, within ABZR86_RS12850at 2877.752 kb on + strand, within ABZR86_RS12850at 2877.752 kb on + strand, within ABZR86_RS12850at 2877.752 kb on + strand, within ABZR86_RS12850at 2877.752 kb on + strand, within ABZR86_RS12850at 2877.752 kb on + strand, within ABZR86_RS12850at 2877.753 kb on - strand, within ABZR86_RS12850at 2877.800 kb on + strand, within ABZR86_RS12850at 2877.800 kb on + strand, within ABZR86_RS12850at 2877.800 kb on + strand, within ABZR86_RS12850at 2877.800 kb on + strand, within ABZR86_RS12850at 2877.800 kb on + strand, within ABZR86_RS12850at 2877.801 kb on - strand, within ABZR86_RS12850at 2877.944 kb on + strand, within ABZR86_RS12850at 2877.945 kb on - strand, within ABZR86_RS12850at 2877.945 kb on - strand, within ABZR86_RS12850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,875,530 + ABZR86_RS12835 0.45 -1.0
2,875,560 + ABZR86_RS12835 0.50 +0.0
2,875,617 + ABZR86_RS12835 0.59 -0.1
2,875,617 + ABZR86_RS12835 0.59 -2.0
2,875,617 + ABZR86_RS12835 0.59 -1.6
2,875,618 - ABZR86_RS12835 0.59 +1.1
2,875,618 - ABZR86_RS12835 0.59 -0.6
2,875,618 - ABZR86_RS12835 0.59 -0.2
2,875,618 - ABZR86_RS12835 0.59 +0.3
2,875,710 + ABZR86_RS12835 0.74 +0.2
2,875,719 + ABZR86_RS12835 0.75 -0.4
2,876,377 + ABZR86_RS12840 0.83 -0.8
2,876,378 - ABZR86_RS12840 0.83 +0.0
2,876,476 + -0.6
2,876,476 + +0.6
2,876,530 + +0.7
2,876,531 - +1.1
2,876,561 - ABZR86_RS12845 0.16 -0.6
2,876,561 - ABZR86_RS12845 0.16 +0.3
2,876,561 - ABZR86_RS12845 0.16 -0.1
2,876,561 - ABZR86_RS12845 0.16 +0.5
2,876,572 + ABZR86_RS12845 0.18 -0.1
2,876,573 - ABZR86_RS12845 0.18 -0.3
2,876,573 - ABZR86_RS12845 0.18 -0.0
2,876,704 + ABZR86_RS12845 0.47 +0.2
2,876,704 + ABZR86_RS12845 0.47 +0.2
2,876,704 + ABZR86_RS12845 0.47 +1.0
2,876,704 + ABZR86_RS12845 0.47 -1.0
2,876,705 - ABZR86_RS12845 0.47 +0.7
2,876,705 - ABZR86_RS12845 0.47 +0.4
2,876,705 - ABZR86_RS12845 0.47 -0.1
2,876,705 - ABZR86_RS12845 0.47 -0.2
2,876,705 - ABZR86_RS12845 0.47 -0.9
2,876,819 - ABZR86_RS12845 0.72 +0.3
2,876,855 - ABZR86_RS12845 0.79 +1.0
2,876,855 - ABZR86_RS12845 0.79 +1.8
2,876,896 + ABZR86_RS12845 0.88 -0.1
2,876,896 + ABZR86_RS12845 0.88 +0.3
2,876,896 + ABZR86_RS12845 0.88 +0.2
2,876,897 - ABZR86_RS12845 0.89 -0.2
2,876,897 - ABZR86_RS12845 0.89 +0.3
2,876,932 + +0.4
2,876,932 + -0.6
2,876,932 + +0.4
2,876,932 + +0.0
2,876,933 - -0.8
2,877,071 - -0.1
2,877,076 - -0.8
2,877,076 - +0.5
2,877,363 - ABZR86_RS12850 0.20 -0.7
2,877,407 + ABZR86_RS12850 0.23 +0.2
2,877,407 + ABZR86_RS12850 0.23 -0.1
2,877,552 - ABZR86_RS12850 0.35 +1.5
2,877,552 - ABZR86_RS12850 0.35 -0.9
2,877,623 + ABZR86_RS12850 0.41 +0.2
2,877,624 - ABZR86_RS12850 0.41 +0.3
2,877,635 + ABZR86_RS12850 0.42 +1.2
2,877,636 - ABZR86_RS12850 0.42 +0.0
2,877,636 - ABZR86_RS12850 0.42 +0.2
2,877,686 + ABZR86_RS12850 0.46 -0.1
2,877,686 + ABZR86_RS12850 0.46 +0.2
2,877,686 + ABZR86_RS12850 0.46 +0.0
2,877,687 - ABZR86_RS12850 0.46 +0.3
2,877,687 - ABZR86_RS12850 0.46 -0.4
2,877,687 - ABZR86_RS12850 0.46 +1.0
2,877,687 - ABZR86_RS12850 0.46 +1.0
2,877,687 - ABZR86_RS12850 0.46 +0.1
2,877,687 - ABZR86_RS12850 0.46 +0.6
2,877,710 + ABZR86_RS12850 0.48 -0.2
2,877,752 + ABZR86_RS12850 0.51 +0.1
2,877,752 + ABZR86_RS12850 0.51 +0.9
2,877,752 + ABZR86_RS12850 0.51 -0.1
2,877,752 + ABZR86_RS12850 0.51 -0.5
2,877,752 + ABZR86_RS12850 0.51 -1.2
2,877,753 - ABZR86_RS12850 0.52 -0.1
2,877,800 + ABZR86_RS12850 0.55 +0.2
2,877,800 + ABZR86_RS12850 0.55 -0.2
2,877,800 + ABZR86_RS12850 0.55 +1.4
2,877,800 + ABZR86_RS12850 0.55 -0.3
2,877,800 + ABZR86_RS12850 0.55 +0.1
2,877,801 - ABZR86_RS12850 0.55 +0.6
2,877,944 + ABZR86_RS12850 0.67 -0.1
2,877,945 - ABZR86_RS12850 0.67 +0.7
2,877,945 - ABZR86_RS12850 0.67 -0.0

Or see this region's nucleotide sequence