Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS10550 and ABZR86_RS10555 are separated by 0 nucleotides ABZR86_RS10555 and ABZR86_RS10560 are separated by 194 nucleotides
ABZR86_RS10550: ABZR86_RS10550 - ATP-binding protein, at 2,344,882 to 2,346,264
_RS10550
ABZR86_RS10555: ABZR86_RS10555 - hypothetical protein, at 2,346,265 to 2,346,579
_RS10555
ABZR86_RS10560: ABZR86_RS10560 - sigma-54 dependent transcriptional regulator, at 2,346,774 to 2,348,117
_RS10560
Position (kb)
2346
2347 Strain fitness (log2 ratio)
-1
0
1 at 2345.333 kb on + strand, within ABZR86_RS10550 at 2345.334 kb on - strand, within ABZR86_RS10550 at 2345.772 kb on - strand, within ABZR86_RS10550 at 2345.772 kb on - strand, within ABZR86_RS10550 at 2345.772 kb on - strand, within ABZR86_RS10550 at 2346.025 kb on + strand, within ABZR86_RS10550 at 2346.025 kb on + strand, within ABZR86_RS10550 at 2346.025 kb on + strand, within ABZR86_RS10550 at 2346.026 kb on - strand, within ABZR86_RS10550 at 2346.185 kb on + strand at 2346.185 kb on + strand at 2346.185 kb on + strand at 2346.185 kb on + strand at 2346.186 kb on - strand at 2346.186 kb on - strand at 2346.186 kb on - strand at 2346.206 kb on + strand at 2346.206 kb on + strand at 2346.206 kb on + strand at 2346.206 kb on + strand at 2346.207 kb on - strand at 2346.207 kb on - strand at 2346.459 kb on - strand, within ABZR86_RS10555 at 2346.618 kb on + strand at 2346.618 kb on + strand at 2346.649 kb on - strand at 2346.649 kb on - strand at 2346.649 kb on - strand at 2346.668 kb on - strand at 2346.668 kb on - strand at 2346.668 kb on - strand at 2346.668 kb on - strand at 2346.668 kb on - strand at 2346.755 kb on + strand at 2346.755 kb on + strand at 2346.756 kb on - strand at 2346.800 kb on - strand at 2346.817 kb on + strand at 2347.105 kb on + strand, within ABZR86_RS10560 at 2347.180 kb on + strand, within ABZR86_RS10560 at 2347.184 kb on - strand, within ABZR86_RS10560 at 2347.254 kb on + strand, within ABZR86_RS10560 at 2347.254 kb on + strand, within ABZR86_RS10560 at 2347.254 kb on + strand, within ABZR86_RS10560 at 2347.255 kb on - strand, within ABZR86_RS10560 at 2347.255 kb on - strand, within ABZR86_RS10560 at 2347.427 kb on - strand, within ABZR86_RS10560
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,345,333 + ABZR86_RS10550 0.33 +0.1 2,345,334 - ABZR86_RS10550 0.33 +0.3 2,345,772 - ABZR86_RS10550 0.64 +0.5 2,345,772 - ABZR86_RS10550 0.64 -0.1 2,345,772 - ABZR86_RS10550 0.64 +0.6 2,346,025 + ABZR86_RS10550 0.83 +0.5 2,346,025 + ABZR86_RS10550 0.83 -0.2 2,346,025 + ABZR86_RS10550 0.83 +0.7 2,346,026 - ABZR86_RS10550 0.83 -0.0 2,346,185 + -0.4 2,346,185 + -0.4 2,346,185 + +0.7 2,346,185 + -1.0 2,346,186 - -0.4 2,346,186 - +0.0 2,346,186 - +0.6 2,346,206 + -0.0 2,346,206 + -0.3 2,346,206 + -0.2 2,346,206 + +0.1 2,346,207 - -0.4 2,346,207 - -0.6 2,346,459 - ABZR86_RS10555 0.62 +0.2 2,346,618 + +0.4 2,346,618 + +0.7 2,346,649 - +0.3 2,346,649 - +0.2 2,346,649 - +0.8 2,346,668 - +0.2 2,346,668 - -0.9 2,346,668 - +1.2 2,346,668 - +0.4 2,346,668 - +0.1 2,346,755 + +0.2 2,346,755 + -0.2 2,346,756 - +0.9 2,346,800 - +0.5 2,346,817 + -0.3 2,347,105 + ABZR86_RS10560 0.25 -0.8 2,347,180 + ABZR86_RS10560 0.30 +0.8 2,347,184 - ABZR86_RS10560 0.31 -0.1 2,347,254 + ABZR86_RS10560 0.36 +1.4 2,347,254 + ABZR86_RS10560 0.36 +1.2 2,347,254 + ABZR86_RS10560 0.36 +0.0 2,347,255 - ABZR86_RS10560 0.36 +0.1 2,347,255 - ABZR86_RS10560 0.36 -0.2 2,347,427 - ABZR86_RS10560 0.49 +0.1
Or see this region's nucleotide sequence