Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07505 and ABZR86_RS07510 are separated by 282 nucleotides ABZR86_RS07510 and ABZR86_RS07515 are separated by 9 nucleotides ABZR86_RS07515 and ABZR86_RS07520 are separated by 222 nucleotides
ABZR86_RS07505: ABZR86_RS07505 - NAD(P)H-dependent oxidoreductase, at 1,654,064 to 1,654,612
_RS07505
ABZR86_RS07510: ABZR86_RS07510 - diguanylate cyclase, at 1,654,895 to 1,656,574
_RS07510
ABZR86_RS07515: ABZR86_RS07515 - Ivy family c-type lysozyme inhibitor, at 1,656,584 to 1,657,138
_RS07515
ABZR86_RS07520: ABZR86_RS07520 - thiamine pyrophosphate-dependent enzyme, at 1,657,361 to 1,659,628
_RS07520
Position (kb)
1654
1655
1656
1657 Strain fitness (log2 ratio)
-1
0
1
2 at 1653.944 kb on + strand at 1653.944 kb on + strand at 1653.945 kb on - strand at 1654.010 kb on - strand at 1654.010 kb on - strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.097 kb on - strand at 1654.097 kb on - strand at 1654.126 kb on + strand, within ABZR86_RS07505 at 1654.218 kb on + strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.476 kb on + strand, within ABZR86_RS07505 at 1654.477 kb on - strand, within ABZR86_RS07505 at 1654.593 kb on - strand at 1654.721 kb on + strand at 1654.721 kb on + strand at 1654.721 kb on + strand at 1654.722 kb on - strand at 1655.163 kb on - strand, within ABZR86_RS07510 at 1655.163 kb on - strand, within ABZR86_RS07510 at 1655.348 kb on + strand, within ABZR86_RS07510 at 1655.349 kb on - strand, within ABZR86_RS07510 at 1655.349 kb on - strand, within ABZR86_RS07510 at 1655.477 kb on + strand, within ABZR86_RS07510 at 1655.489 kb on + strand, within ABZR86_RS07510 at 1655.519 kb on + strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.785 kb on - strand, within ABZR86_RS07510 at 1656.470 kb on + strand at 1656.470 kb on + strand at 1656.470 kb on + strand at 1656.501 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.847 kb on + strand, within ABZR86_RS07515 at 1656.847 kb on + strand, within ABZR86_RS07515 at 1656.848 kb on - strand, within ABZR86_RS07515 at 1656.943 kb on - strand, within ABZR86_RS07515 at 1656.943 kb on - strand, within ABZR86_RS07515 at 1657.183 kb on - strand at 1657.257 kb on + strand at 1657.258 kb on - strand at 1657.343 kb on + strand at 1657.343 kb on + strand at 1657.343 kb on + strand at 1657.344 kb on - strand at 1657.344 kb on - strand at 1657.344 kb on - strand at 1657.363 kb on - strand at 1657.363 kb on - strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.445 kb on - strand at 1657.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,653,944 + +0.7 1,653,944 + -0.5 1,653,945 - -0.3 1,654,010 - +0.2 1,654,010 - -0.2 1,654,092 + +0.0 1,654,092 + -0.2 1,654,092 + +0.3 1,654,092 + +0.5 1,654,092 + +0.4 1,654,092 + +0.1 1,654,092 + -0.7 1,654,092 + -0.1 1,654,092 + -0.2 1,654,093 - -0.8 1,654,093 - +0.8 1,654,093 - -0.6 1,654,093 - +0.4 1,654,093 - +0.2 1,654,097 - +0.6 1,654,097 - -1.5 1,654,126 + ABZR86_RS07505 0.11 -0.4 1,654,218 + ABZR86_RS07505 0.28 +0.1 1,654,219 - ABZR86_RS07505 0.28 -0.5 1,654,219 - ABZR86_RS07505 0.28 +0.0 1,654,219 - ABZR86_RS07505 0.28 -0.3 1,654,219 - ABZR86_RS07505 0.28 -0.7 1,654,219 - ABZR86_RS07505 0.28 +0.4 1,654,476 + ABZR86_RS07505 0.75 -1.5 1,654,477 - ABZR86_RS07505 0.75 -0.3 1,654,593 - +0.0 1,654,721 + +0.4 1,654,721 + +0.7 1,654,721 + +0.0 1,654,722 - -0.9 1,655,163 - ABZR86_RS07510 0.16 +0.4 1,655,163 - ABZR86_RS07510 0.16 -0.8 1,655,348 + ABZR86_RS07510 0.27 -0.8 1,655,349 - ABZR86_RS07510 0.27 -0.3 1,655,349 - ABZR86_RS07510 0.27 -0.4 1,655,477 + ABZR86_RS07510 0.35 +0.3 1,655,489 + ABZR86_RS07510 0.35 +0.2 1,655,519 + ABZR86_RS07510 0.37 -0.4 1,655,520 - ABZR86_RS07510 0.37 -0.7 1,655,520 - ABZR86_RS07510 0.37 -0.5 1,655,520 - ABZR86_RS07510 0.37 -0.1 1,655,520 - ABZR86_RS07510 0.37 +0.2 1,655,520 - ABZR86_RS07510 0.37 -0.4 1,655,785 - ABZR86_RS07510 0.53 +0.9 1,656,470 + +0.8 1,656,470 + +0.4 1,656,470 + -0.8 1,656,501 + -0.1 1,656,597 + -0.2 1,656,597 + +0.9 1,656,597 + +0.8 1,656,597 + +0.6 1,656,598 - +0.1 1,656,598 - +1.4 1,656,598 - +0.9 1,656,598 - -0.1 1,656,598 - +2.3 1,656,598 - -0.1 1,656,598 - +0.2 1,656,847 + ABZR86_RS07515 0.47 -0.2 1,656,847 + ABZR86_RS07515 0.47 -1.0 1,656,848 - ABZR86_RS07515 0.48 +0.2 1,656,943 - ABZR86_RS07515 0.65 +0.6 1,656,943 - ABZR86_RS07515 0.65 +0.9 1,657,183 - +0.1 1,657,257 + +0.6 1,657,258 - -0.1 1,657,343 + -1.1 1,657,343 + -0.5 1,657,343 + +0.0 1,657,344 - -0.9 1,657,344 - -0.4 1,657,344 - +0.2 1,657,363 - +0.8 1,657,363 - -0.1 1,657,440 + +0.1 1,657,440 + -0.6 1,657,440 + +0.5 1,657,440 + -0.4 1,657,445 - +1.2 1,657,445 - -0.3
Or see this region's nucleotide sequence