Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05845 and ABZR86_RS05850 are separated by 107 nucleotides ABZR86_RS05850 and ABZR86_RS05855 are separated by 228 nucleotides ABZR86_RS05855 and ABZR86_RS05860 are separated by 135 nucleotides
ABZR86_RS05845: ABZR86_RS05845 - DUF2884 family protein, at 1,311,777 to 1,312,322
_RS05845
ABZR86_RS05850: ABZR86_RS05850 - dihydrofolate reductase family protein, at 1,312,430 to 1,313,011
_RS05850
ABZR86_RS05855: ABZR86_RS05855 - class II fumarate hydratase, at 1,313,240 to 1,314,637
_RS05855
ABZR86_RS05860: ABZR86_RS05860 - adenylosuccinate lyase, at 1,314,773 to 1,316,140
_RS05860
Position (kb)
1313
1314
1315 Strain fitness (log2 ratio)
-1
0
1
2 at 1312.421 kb on + strand at 1312.421 kb on + strand at 1312.421 kb on + strand at 1312.421 kb on + strand at 1312.431 kb on + strand at 1312.848 kb on + strand, within ABZR86_RS05850 at 1312.848 kb on + strand, within ABZR86_RS05850 at 1312.849 kb on - strand, within ABZR86_RS05850 at 1312.968 kb on + strand at 1312.968 kb on + strand at 1313.373 kb on + strand at 1313.373 kb on + strand at 1313.373 kb on + strand at 1313.373 kb on + strand at 1313.373 kb on + strand at 1313.374 kb on - strand at 1313.374 kb on - strand at 1313.374 kb on - strand at 1313.868 kb on + strand, within ABZR86_RS05855 at 1313.868 kb on + strand, within ABZR86_RS05855 at 1313.868 kb on + strand, within ABZR86_RS05855 at 1313.868 kb on + strand, within ABZR86_RS05855 at 1313.869 kb on - strand, within ABZR86_RS05855 at 1313.869 kb on - strand, within ABZR86_RS05855 at 1313.869 kb on - strand, within ABZR86_RS05855 at 1313.869 kb on - strand, within ABZR86_RS05855 at 1314.252 kb on + strand, within ABZR86_RS05855 at 1314.253 kb on - strand, within ABZR86_RS05855 at 1314.253 kb on - strand, within ABZR86_RS05855 at 1314.328 kb on + strand, within ABZR86_RS05855 at 1314.328 kb on + strand, within ABZR86_RS05855 at 1314.329 kb on - strand, within ABZR86_RS05855 at 1314.329 kb on - strand, within ABZR86_RS05855 at 1314.329 kb on - strand, within ABZR86_RS05855 at 1314.573 kb on + strand at 1314.574 kb on - strand at 1314.627 kb on + strand at 1314.627 kb on + strand at 1314.674 kb on + strand at 1314.674 kb on + strand at 1314.674 kb on + strand at 1314.674 kb on + strand at 1314.674 kb on + strand at 1314.674 kb on + strand at 1314.674 kb on + strand at 1314.675 kb on - strand at 1314.675 kb on - strand at 1314.675 kb on - strand at 1314.675 kb on - strand at 1314.676 kb on + strand at 1314.676 kb on + strand at 1314.676 kb on + strand at 1314.676 kb on + strand at 1314.676 kb on + strand at 1314.676 kb on + strand at 1314.676 kb on + strand at 1314.677 kb on - strand at 1314.739 kb on + strand at 1315.413 kb on - strand, within ABZR86_RS05860 at 1315.413 kb on - strand, within ABZR86_RS05860 at 1315.604 kb on + strand, within ABZR86_RS05860
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,312,421 + -0.1 1,312,421 + +0.2 1,312,421 + +0.2 1,312,421 + -0.1 1,312,431 + +0.7 1,312,848 + ABZR86_RS05850 0.72 +0.5 1,312,848 + ABZR86_RS05850 0.72 -0.2 1,312,849 - ABZR86_RS05850 0.72 +0.1 1,312,968 + -0.3 1,312,968 + +0.8 1,313,373 + +0.7 1,313,373 + +0.8 1,313,373 + +0.1 1,313,373 + +0.4 1,313,373 + -0.1 1,313,374 - +0.2 1,313,374 - +1.6 1,313,374 - +0.5 1,313,868 + ABZR86_RS05855 0.45 -0.9 1,313,868 + ABZR86_RS05855 0.45 -0.4 1,313,868 + ABZR86_RS05855 0.45 +0.4 1,313,868 + ABZR86_RS05855 0.45 +0.6 1,313,869 - ABZR86_RS05855 0.45 +0.6 1,313,869 - ABZR86_RS05855 0.45 +0.8 1,313,869 - ABZR86_RS05855 0.45 +0.2 1,313,869 - ABZR86_RS05855 0.45 -0.2 1,314,252 + ABZR86_RS05855 0.72 -1.3 1,314,253 - ABZR86_RS05855 0.72 -0.1 1,314,253 - ABZR86_RS05855 0.72 +0.5 1,314,328 + ABZR86_RS05855 0.78 +0.2 1,314,328 + ABZR86_RS05855 0.78 +0.3 1,314,329 - ABZR86_RS05855 0.78 +0.0 1,314,329 - ABZR86_RS05855 0.78 +0.9 1,314,329 - ABZR86_RS05855 0.78 +0.2 1,314,573 + +0.0 1,314,574 - -1.1 1,314,627 + +0.1 1,314,627 + +0.1 1,314,674 + -1.0 1,314,674 + -0.8 1,314,674 + +0.9 1,314,674 + +1.8 1,314,674 + -0.4 1,314,674 + -0.0 1,314,674 + -0.2 1,314,675 - +1.4 1,314,675 - +1.7 1,314,675 - +0.0 1,314,675 - +0.8 1,314,676 + -0.4 1,314,676 + +0.4 1,314,676 + +0.7 1,314,676 + +0.7 1,314,676 + +0.1 1,314,676 + +0.4 1,314,676 + -1.3 1,314,677 - -0.6 1,314,739 + +0.5 1,315,413 - ABZR86_RS05860 0.47 -0.4 1,315,413 - ABZR86_RS05860 0.47 +0.1 1,315,604 + ABZR86_RS05860 0.61 +0.2
Or see this region's nucleotide sequence