Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05485 and ABZR86_RS05490 are separated by 190 nucleotides ABZR86_RS05490 and ABZR86_RS05495 overlap by 4 nucleotides ABZR86_RS05495 and ABZR86_RS05500 are separated by 3 nucleotides
ABZR86_RS05485: ABZR86_RS05485 - ATP-binding cassette domain-containing protein, at 1,235,550 to 1,236,458
_RS05485
ABZR86_RS05490: ABZR86_RS05490 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 1,236,649 to 1,237,401
_RS05490
ABZR86_RS05495: ABZR86_RS05495 - 2OG-Fe(II) oxygenase, at 1,237,398 to 1,238,135
_RS05495
ABZR86_RS05500: ABZR86_RS05500 - trimeric intracellular cation channel family protein, at 1,238,139 to 1,238,777
_RS05500
Position (kb) 1236
1237
1238 Strain fitness (log2 ratio) -1
0
1
2 at 1236.067 kb on + strand, within ABZR86_RS05485 at 1236.364 kb on + strand, within ABZR86_RS05485 at 1236.364 kb on + strand, within ABZR86_RS05485 at 1236.364 kb on + strand, within ABZR86_RS05485 at 1236.365 kb on - strand, within ABZR86_RS05485 at 1236.365 kb on - strand, within ABZR86_RS05485 at 1236.365 kb on - strand, within ABZR86_RS05485 at 1236.365 kb on - strand, within ABZR86_RS05485 at 1236.448 kb on - strand at 1236.480 kb on + strand at 1236.480 kb on + strand at 1236.481 kb on - strand at 1236.522 kb on + strand at 1236.523 kb on - strand at 1236.523 kb on - strand at 1236.523 kb on - strand at 1236.614 kb on + strand at 1236.614 kb on + strand at 1236.615 kb on - strand at 1236.615 kb on - strand at 1236.615 kb on - strand at 1236.615 kb on - strand at 1236.615 kb on - strand at 1236.778 kb on + strand, within ABZR86_RS05490 at 1236.779 kb on - strand, within ABZR86_RS05490 at 1236.779 kb on - strand, within ABZR86_RS05490 at 1236.917 kb on - strand, within ABZR86_RS05490 at 1236.974 kb on + strand, within ABZR86_RS05490 at 1236.975 kb on - strand, within ABZR86_RS05490 at 1236.975 kb on - strand, within ABZR86_RS05490 at 1237.213 kb on + strand, within ABZR86_RS05490 at 1237.213 kb on + strand, within ABZR86_RS05490 at 1237.213 kb on + strand, within ABZR86_RS05490 at 1237.214 kb on - strand, within ABZR86_RS05490 at 1237.554 kb on + strand, within ABZR86_RS05495 at 1237.555 kb on - strand, within ABZR86_RS05495 at 1237.620 kb on + strand, within ABZR86_RS05495 at 1237.620 kb on + strand, within ABZR86_RS05495 at 1237.626 kb on + strand, within ABZR86_RS05495 at 1237.627 kb on - strand, within ABZR86_RS05495 at 1237.627 kb on - strand, within ABZR86_RS05495 at 1237.830 kb on + strand, within ABZR86_RS05495 at 1237.830 kb on + strand, within ABZR86_RS05495 at 1237.831 kb on - strand, within ABZR86_RS05495 at 1237.831 kb on - strand, within ABZR86_RS05495 at 1237.831 kb on - strand, within ABZR86_RS05495 at 1237.984 kb on + strand, within ABZR86_RS05495 at 1238.049 kb on + strand, within ABZR86_RS05495 at 1238.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,236,067 + ABZR86_RS05485 0.57 -0.9 1,236,364 + ABZR86_RS05485 0.90 +0.0 1,236,364 + ABZR86_RS05485 0.90 +0.3 1,236,364 + ABZR86_RS05485 0.90 +0.8 1,236,365 - ABZR86_RS05485 0.90 -0.6 1,236,365 - ABZR86_RS05485 0.90 +0.4 1,236,365 - ABZR86_RS05485 0.90 +0.0 1,236,365 - ABZR86_RS05485 0.90 +0.2 1,236,448 - +0.1 1,236,480 + +0.4 1,236,480 + -0.6 1,236,481 - +0.1 1,236,522 + +0.5 1,236,523 - -0.0 1,236,523 - +0.5 1,236,523 - +1.5 1,236,614 + -0.3 1,236,614 + -0.1 1,236,615 - +0.2 1,236,615 - +0.1 1,236,615 - +0.1 1,236,615 - +0.2 1,236,615 - +0.2 1,236,778 + ABZR86_RS05490 0.17 -0.4 1,236,779 - ABZR86_RS05490 0.17 -0.0 1,236,779 - ABZR86_RS05490 0.17 -1.3 1,236,917 - ABZR86_RS05490 0.36 -1.5 1,236,974 + ABZR86_RS05490 0.43 +0.2 1,236,975 - ABZR86_RS05490 0.43 +0.4 1,236,975 - ABZR86_RS05490 0.43 -0.1 1,237,213 + ABZR86_RS05490 0.75 -0.5 1,237,213 + ABZR86_RS05490 0.75 +0.9 1,237,213 + ABZR86_RS05490 0.75 -0.8 1,237,214 - ABZR86_RS05490 0.75 -0.8 1,237,554 + ABZR86_RS05495 0.21 -1.3 1,237,555 - ABZR86_RS05495 0.21 -0.6 1,237,620 + ABZR86_RS05495 0.30 +0.5 1,237,620 + ABZR86_RS05495 0.30 -0.6 1,237,626 + ABZR86_RS05495 0.31 -0.3 1,237,627 - ABZR86_RS05495 0.31 +0.1 1,237,627 - ABZR86_RS05495 0.31 -0.1 1,237,830 + ABZR86_RS05495 0.59 -0.5 1,237,830 + ABZR86_RS05495 0.59 +1.1 1,237,831 - ABZR86_RS05495 0.59 -0.4 1,237,831 - ABZR86_RS05495 0.59 +2.3 1,237,831 - ABZR86_RS05495 0.59 +1.5 1,237,984 + ABZR86_RS05495 0.79 +0.1 1,238,049 + ABZR86_RS05495 0.88 -0.3 1,238,192 - +0.6
Or see this region's nucleotide sequence