Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05165

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05160 and ABZR86_RS05165 are separated by 3 nucleotidesABZR86_RS05165 and ABZR86_RS05170 are separated by 32 nucleotides ABZR86_RS05160: ABZR86_RS05160 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 1,166,857 to 1,167,762 _RS05160 ABZR86_RS05165: ABZR86_RS05165 - transketolase, at 1,167,766 to 1,169,814 _RS05165 ABZR86_RS05170: ABZR86_RS05170 - transaldolase, at 1,169,847 to 1,170,929 _RS05170 Position (kb) 1167 1168 1169 1170Strain fitness (log2 ratio) -2 -1 0 1at 1166.788 kb on + strandat 1166.788 kb on + strandat 1166.788 kb on + strandat 1166.788 kb on + strandat 1166.788 kb on + strandat 1166.788 kb on + strandat 1166.788 kb on + strandat 1166.788 kb on + strandat 1166.789 kb on - strandat 1166.789 kb on - strandat 1166.799 kb on + strandat 1166.980 kb on - strand, within ABZR86_RS05160at 1166.980 kb on - strand, within ABZR86_RS05160at 1167.039 kb on + strand, within ABZR86_RS05160at 1167.040 kb on - strand, within ABZR86_RS05160at 1167.148 kb on + strand, within ABZR86_RS05160at 1167.149 kb on - strand, within ABZR86_RS05160at 1167.200 kb on - strand, within ABZR86_RS05160at 1167.247 kb on + strand, within ABZR86_RS05160at 1167.247 kb on + strand, within ABZR86_RS05160at 1167.247 kb on + strand, within ABZR86_RS05160at 1167.247 kb on + strand, within ABZR86_RS05160at 1167.248 kb on - strand, within ABZR86_RS05160at 1167.248 kb on - strand, within ABZR86_RS05160at 1167.394 kb on + strand, within ABZR86_RS05160at 1167.416 kb on - strand, within ABZR86_RS05160at 1167.577 kb on + strand, within ABZR86_RS05160at 1167.577 kb on + strand, within ABZR86_RS05160at 1167.761 kb on - strandat 1168.022 kb on - strand, within ABZR86_RS05165at 1168.145 kb on + strand, within ABZR86_RS05165at 1168.226 kb on - strand, within ABZR86_RS05165at 1168.451 kb on + strand, within ABZR86_RS05165at 1168.451 kb on + strand, within ABZR86_RS05165at 1168.451 kb on + strand, within ABZR86_RS05165at 1168.452 kb on - strand, within ABZR86_RS05165at 1168.452 kb on - strand, within ABZR86_RS05165at 1168.452 kb on - strand, within ABZR86_RS05165at 1168.452 kb on - strand, within ABZR86_RS05165at 1168.452 kb on - strand, within ABZR86_RS05165at 1168.571 kb on + strand, within ABZR86_RS05165at 1168.572 kb on - strand, within ABZR86_RS05165at 1168.865 kb on + strand, within ABZR86_RS05165at 1168.865 kb on + strand, within ABZR86_RS05165at 1168.866 kb on - strand, within ABZR86_RS05165at 1169.223 kb on + strand, within ABZR86_RS05165at 1169.223 kb on + strand, within ABZR86_RS05165at 1169.223 kb on + strand, within ABZR86_RS05165at 1169.224 kb on - strand, within ABZR86_RS05165at 1169.224 kb on - strand, within ABZR86_RS05165at 1169.264 kb on + strand, within ABZR86_RS05165at 1169.360 kb on + strand, within ABZR86_RS05165at 1169.361 kb on - strand, within ABZR86_RS05165at 1169.361 kb on - strand, within ABZR86_RS05165at 1169.595 kb on - strand, within ABZR86_RS05165at 1169.696 kb on + strandat 1169.697 kb on - strandat 1169.697 kb on - strandat 1169.697 kb on - strandat 1169.697 kb on - strandat 1169.697 kb on - strandat 1169.782 kb on - strandat 1169.782 kb on - strandat 1169.831 kb on + strandat 1169.831 kb on + strandat 1170.115 kb on + strand, within ABZR86_RS05170at 1170.115 kb on + strand, within ABZR86_RS05170at 1170.115 kb on + strand, within ABZR86_RS05170at 1170.116 kb on - strand, within ABZR86_RS05170at 1170.116 kb on - strand, within ABZR86_RS05170at 1170.232 kb on + strand, within ABZR86_RS05170at 1170.233 kb on - strand, within ABZR86_RS05170at 1170.241 kb on + strand, within ABZR86_RS05170at 1170.241 kb on + strand, within ABZR86_RS05170at 1170.242 kb on - strand, within ABZR86_RS05170at 1170.395 kb on + strand, within ABZR86_RS05170at 1170.396 kb on - strand, within ABZR86_RS05170at 1170.397 kb on + strand, within ABZR86_RS05170at 1170.397 kb on + strand, within ABZR86_RS05170at 1170.397 kb on + strand, within ABZR86_RS05170at 1170.398 kb on - strand, within ABZR86_RS05170at 1170.398 kb on - strand, within ABZR86_RS05170at 1170.398 kb on - strand, within ABZR86_RS05170at 1170.398 kb on - strand, within ABZR86_RS05170at 1170.398 kb on - strand, within ABZR86_RS05170at 1170.398 kb on - strand, within ABZR86_RS05170at 1170.418 kb on + strand, within ABZR86_RS05170at 1170.418 kb on + strand, within ABZR86_RS05170at 1170.520 kb on + strand, within ABZR86_RS05170at 1170.521 kb on - strand, within ABZR86_RS05170at 1170.757 kb on + strand, within ABZR86_RS05170at 1170.758 kb on - strand, within ABZR86_RS05170

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,166,788 + -0.6
1,166,788 + -0.4
1,166,788 + +0.8
1,166,788 + +0.5
1,166,788 + +0.4
1,166,788 + +0.7
1,166,788 + -0.3
1,166,788 + +0.5
1,166,789 - -0.4
1,166,789 - +0.0
1,166,799 + +0.1
1,166,980 - ABZR86_RS05160 0.14 -0.6
1,166,980 - ABZR86_RS05160 0.14 +0.2
1,167,039 + ABZR86_RS05160 0.20 +0.0
1,167,040 - ABZR86_RS05160 0.20 -0.2
1,167,148 + ABZR86_RS05160 0.32 +1.0
1,167,149 - ABZR86_RS05160 0.32 +0.1
1,167,200 - ABZR86_RS05160 0.38 +0.3
1,167,247 + ABZR86_RS05160 0.43 -1.2
1,167,247 + ABZR86_RS05160 0.43 +1.4
1,167,247 + ABZR86_RS05160 0.43 +0.7
1,167,247 + ABZR86_RS05160 0.43 -0.6
1,167,248 - ABZR86_RS05160 0.43 -0.1
1,167,248 - ABZR86_RS05160 0.43 +0.6
1,167,394 + ABZR86_RS05160 0.59 -0.0
1,167,416 - ABZR86_RS05160 0.62 -0.7
1,167,577 + ABZR86_RS05160 0.79 -0.2
1,167,577 + ABZR86_RS05160 0.79 +0.3
1,167,761 - -0.3
1,168,022 - ABZR86_RS05165 0.12 -0.5
1,168,145 + ABZR86_RS05165 0.18 -0.4
1,168,226 - ABZR86_RS05165 0.22 -0.6
1,168,451 + ABZR86_RS05165 0.33 -0.6
1,168,451 + ABZR86_RS05165 0.33 +0.4
1,168,451 + ABZR86_RS05165 0.33 +0.8
1,168,452 - ABZR86_RS05165 0.33 -0.6
1,168,452 - ABZR86_RS05165 0.33 -1.6
1,168,452 - ABZR86_RS05165 0.33 +0.3
1,168,452 - ABZR86_RS05165 0.33 -0.1
1,168,452 - ABZR86_RS05165 0.33 -0.2
1,168,571 + ABZR86_RS05165 0.39 +0.5
1,168,572 - ABZR86_RS05165 0.39 -0.8
1,168,865 + ABZR86_RS05165 0.54 +0.2
1,168,865 + ABZR86_RS05165 0.54 +0.2
1,168,866 - ABZR86_RS05165 0.54 +0.3
1,169,223 + ABZR86_RS05165 0.71 -0.2
1,169,223 + ABZR86_RS05165 0.71 +0.9
1,169,223 + ABZR86_RS05165 0.71 +0.1
1,169,224 - ABZR86_RS05165 0.71 -0.6
1,169,224 - ABZR86_RS05165 0.71 +0.0
1,169,264 + ABZR86_RS05165 0.73 +0.2
1,169,360 + ABZR86_RS05165 0.78 +0.1
1,169,361 - ABZR86_RS05165 0.78 -0.4
1,169,361 - ABZR86_RS05165 0.78 +0.0
1,169,595 - ABZR86_RS05165 0.89 -0.5
1,169,696 + +1.3
1,169,697 - +0.3
1,169,697 - -1.3
1,169,697 - -0.4
1,169,697 - +0.3
1,169,697 - -0.5
1,169,782 - +0.3
1,169,782 - +0.5
1,169,831 + +0.5
1,169,831 + -0.3
1,170,115 + ABZR86_RS05170 0.25 -0.9
1,170,115 + ABZR86_RS05170 0.25 -0.1
1,170,115 + ABZR86_RS05170 0.25 -0.7
1,170,116 - ABZR86_RS05170 0.25 -0.3
1,170,116 - ABZR86_RS05170 0.25 -0.7
1,170,232 + ABZR86_RS05170 0.36 -1.4
1,170,233 - ABZR86_RS05170 0.36 -0.6
1,170,241 + ABZR86_RS05170 0.36 -1.0
1,170,241 + ABZR86_RS05170 0.36 +0.1
1,170,242 - ABZR86_RS05170 0.36 -1.8
1,170,395 + ABZR86_RS05170 0.51 +0.7
1,170,396 - ABZR86_RS05170 0.51 -0.3
1,170,397 + ABZR86_RS05170 0.51 +0.1
1,170,397 + ABZR86_RS05170 0.51 +1.3
1,170,397 + ABZR86_RS05170 0.51 -0.9
1,170,398 - ABZR86_RS05170 0.51 -0.1
1,170,398 - ABZR86_RS05170 0.51 +0.5
1,170,398 - ABZR86_RS05170 0.51 +0.9
1,170,398 - ABZR86_RS05170 0.51 -0.6
1,170,398 - ABZR86_RS05170 0.51 +0.1
1,170,398 - ABZR86_RS05170 0.51 +0.3
1,170,418 + ABZR86_RS05170 0.53 -0.5
1,170,418 + ABZR86_RS05170 0.53 +0.3
1,170,520 + ABZR86_RS05170 0.62 -0.0
1,170,521 - ABZR86_RS05170 0.62 +0.1
1,170,757 + ABZR86_RS05170 0.84 -1.1
1,170,758 - ABZR86_RS05170 0.84 +0.1

Or see this region's nucleotide sequence