Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04760 and ABZR86_RS04765 are separated by 286 nucleotides ABZR86_RS04765 and ABZR86_RS04770 are separated by 101 nucleotides ABZR86_RS04770 and ABZR86_RS04775 are separated by 81 nucleotides ABZR86_RS04775 and ABZR86_RS04780 are separated by 71 nucleotides
ABZR86_RS04760: ABZR86_RS04760 - FdtA/QdtA family cupin domain-containing protein, at 1,066,424 to 1,066,849
_RS04760
ABZR86_RS04765: ABZR86_RS04765 - cytochrome b/b6 domain-containing protein, at 1,067,136 to 1,067,708
_RS04765
ABZR86_RS04770: ABZR86_RS04770 - cytochrome C, at 1,067,810 to 1,069,087
_RS04770
ABZR86_RS04775: ABZR86_RS04775 - c-type cytochrome, at 1,069,169 to 1,069,504
_RS04775
ABZR86_RS04780: ABZR86_RS04780 - hypothetical protein, at 1,069,576 to 1,070,232
_RS04780
Position (kb)
1067
1068
1069
1070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1066.876 kb on + strand at 1067.029 kb on + strand at 1067.029 kb on + strand at 1067.029 kb on + strand at 1067.068 kb on - strand at 1067.068 kb on - strand at 1067.068 kb on - strand at 1067.413 kb on + strand, within ABZR86_RS04765 at 1067.414 kb on - strand, within ABZR86_RS04765 at 1067.448 kb on + strand, within ABZR86_RS04765 at 1067.646 kb on + strand, within ABZR86_RS04765 at 1067.647 kb on - strand, within ABZR86_RS04765 at 1067.822 kb on + strand at 1067.879 kb on + strand at 1067.880 kb on - strand at 1067.927 kb on + strand at 1067.927 kb on + strand at 1067.927 kb on + strand at 1067.927 kb on + strand at 1067.928 kb on - strand at 1067.928 kb on - strand at 1067.978 kb on - strand, within ABZR86_RS04770 at 1068.090 kb on - strand, within ABZR86_RS04770 at 1068.126 kb on - strand, within ABZR86_RS04770 at 1068.146 kb on - strand, within ABZR86_RS04770 at 1068.392 kb on + strand, within ABZR86_RS04770 at 1068.401 kb on + strand, within ABZR86_RS04770 at 1068.416 kb on + strand, within ABZR86_RS04770 at 1068.434 kb on + strand, within ABZR86_RS04770 at 1068.434 kb on + strand, within ABZR86_RS04770 at 1068.434 kb on + strand, within ABZR86_RS04770 at 1068.434 kb on + strand, within ABZR86_RS04770 at 1068.435 kb on - strand, within ABZR86_RS04770 at 1068.435 kb on - strand, within ABZR86_RS04770 at 1068.515 kb on + strand, within ABZR86_RS04770 at 1068.530 kb on + strand, within ABZR86_RS04770 at 1068.530 kb on + strand, within ABZR86_RS04770 at 1068.531 kb on - strand, within ABZR86_RS04770 at 1068.642 kb on - strand, within ABZR86_RS04770 at 1068.654 kb on - strand, within ABZR86_RS04770 at 1068.659 kb on + strand, within ABZR86_RS04770 at 1068.660 kb on - strand, within ABZR86_RS04770 at 1068.695 kb on + strand, within ABZR86_RS04770 at 1068.696 kb on - strand, within ABZR86_RS04770 at 1068.696 kb on - strand, within ABZR86_RS04770 at 1068.696 kb on - strand, within ABZR86_RS04770 at 1068.696 kb on - strand, within ABZR86_RS04770 at 1068.723 kb on - strand, within ABZR86_RS04770 at 1068.791 kb on + strand, within ABZR86_RS04770 at 1068.791 kb on + strand, within ABZR86_RS04770 at 1068.792 kb on - strand, within ABZR86_RS04770 at 1068.792 kb on - strand, within ABZR86_RS04770 at 1068.792 kb on - strand, within ABZR86_RS04770 at 1068.792 kb on - strand, within ABZR86_RS04770 at 1068.792 kb on - strand, within ABZR86_RS04770 at 1068.794 kb on - strand, within ABZR86_RS04770 at 1068.794 kb on - strand, within ABZR86_RS04770 at 1068.794 kb on - strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.809 kb on + strand, within ABZR86_RS04770 at 1068.810 kb on - strand, within ABZR86_RS04770 at 1068.810 kb on - strand, within ABZR86_RS04770 at 1068.810 kb on - strand, within ABZR86_RS04770 at 1068.810 kb on - strand, within ABZR86_RS04770 at 1068.810 kb on - strand, within ABZR86_RS04770 at 1068.810 kb on - strand, within ABZR86_RS04770 at 1068.811 kb on + strand, within ABZR86_RS04770 at 1068.812 kb on - strand, within ABZR86_RS04770 at 1068.872 kb on + strand, within ABZR86_RS04770 at 1068.911 kb on + strand, within ABZR86_RS04770 at 1068.941 kb on + strand, within ABZR86_RS04770 at 1068.942 kb on - strand, within ABZR86_RS04770 at 1068.942 kb on - strand, within ABZR86_RS04770 at 1069.153 kb on - strand at 1069.153 kb on - strand at 1069.325 kb on + strand, within ABZR86_RS04775 at 1069.326 kb on - strand, within ABZR86_RS04775 at 1069.331 kb on + strand, within ABZR86_RS04775 at 1069.391 kb on + strand, within ABZR86_RS04775 at 1069.392 kb on - strand, within ABZR86_RS04775 at 1069.392 kb on - strand, within ABZR86_RS04775 at 1069.392 kb on - strand, within ABZR86_RS04775 at 1069.392 kb on - strand, within ABZR86_RS04775 at 1069.440 kb on - strand, within ABZR86_RS04775 at 1069.440 kb on - strand, within ABZR86_RS04775 at 1069.600 kb on - strand at 1069.804 kb on + strand, within ABZR86_RS04780 at 1069.804 kb on + strand, within ABZR86_RS04780 at 1069.849 kb on + strand, within ABZR86_RS04780 at 1069.849 kb on + strand, within ABZR86_RS04780 at 1069.849 kb on + strand, within ABZR86_RS04780 at 1069.850 kb on - strand, within ABZR86_RS04780 at 1069.850 kb on - strand, within ABZR86_RS04780 at 1069.850 kb on - strand, within ABZR86_RS04780 at 1069.852 kb on + strand, within ABZR86_RS04780 at 1069.852 kb on + strand, within ABZR86_RS04780 at 1069.852 kb on + strand, within ABZR86_RS04780 at 1069.852 kb on + strand, within ABZR86_RS04780 at 1069.853 kb on - strand, within ABZR86_RS04780 at 1069.858 kb on + strand, within ABZR86_RS04780 at 1070.059 kb on + strand, within ABZR86_RS04780 at 1070.060 kb on - strand, within ABZR86_RS04780 at 1070.072 kb on - strand, within ABZR86_RS04780 at 1070.077 kb on + strand, within ABZR86_RS04780 at 1070.077 kb on + strand, within ABZR86_RS04780 at 1070.077 kb on + strand, within ABZR86_RS04780 at 1070.077 kb on + strand, within ABZR86_RS04780 at 1070.078 kb on - strand, within ABZR86_RS04780 at 1070.078 kb on - strand, within ABZR86_RS04780 at 1070.080 kb on + strand, within ABZR86_RS04780 at 1070.080 kb on + strand, within ABZR86_RS04780 at 1070.081 kb on - strand, within ABZR86_RS04780 at 1070.081 kb on - strand, within ABZR86_RS04780
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,066,876 + -0.2 1,067,029 + +0.7 1,067,029 + +0.1 1,067,029 + -0.0 1,067,068 - +0.4 1,067,068 - -0.3 1,067,068 - -0.3 1,067,413 + ABZR86_RS04765 0.48 +0.3 1,067,414 - ABZR86_RS04765 0.49 +0.7 1,067,448 + ABZR86_RS04765 0.54 -0.4 1,067,646 + ABZR86_RS04765 0.89 +0.2 1,067,647 - ABZR86_RS04765 0.89 -0.2 1,067,822 + -0.5 1,067,879 + -0.4 1,067,880 - -1.4 1,067,927 + -0.2 1,067,927 + +0.4 1,067,927 + -0.8 1,067,927 + -1.0 1,067,928 - +0.1 1,067,928 - +0.9 1,067,978 - ABZR86_RS04770 0.13 -0.0 1,068,090 - ABZR86_RS04770 0.22 +0.2 1,068,126 - ABZR86_RS04770 0.25 +0.1 1,068,146 - ABZR86_RS04770 0.26 -1.3 1,068,392 + ABZR86_RS04770 0.46 -0.8 1,068,401 + ABZR86_RS04770 0.46 -0.7 1,068,416 + ABZR86_RS04770 0.47 +0.1 1,068,434 + ABZR86_RS04770 0.49 +0.5 1,068,434 + ABZR86_RS04770 0.49 +0.3 1,068,434 + ABZR86_RS04770 0.49 -0.1 1,068,434 + ABZR86_RS04770 0.49 +0.1 1,068,435 - ABZR86_RS04770 0.49 -0.5 1,068,435 - ABZR86_RS04770 0.49 -0.3 1,068,515 + ABZR86_RS04770 0.55 -0.3 1,068,530 + ABZR86_RS04770 0.56 -0.3 1,068,530 + ABZR86_RS04770 0.56 +0.3 1,068,531 - ABZR86_RS04770 0.56 +0.0 1,068,642 - ABZR86_RS04770 0.65 +1.0 1,068,654 - ABZR86_RS04770 0.66 +0.6 1,068,659 + ABZR86_RS04770 0.66 -0.7 1,068,660 - ABZR86_RS04770 0.67 -0.5 1,068,695 + ABZR86_RS04770 0.69 +0.3 1,068,696 - ABZR86_RS04770 0.69 +0.5 1,068,696 - ABZR86_RS04770 0.69 +0.7 1,068,696 - ABZR86_RS04770 0.69 +0.5 1,068,696 - ABZR86_RS04770 0.69 -0.4 1,068,723 - ABZR86_RS04770 0.71 -0.3 1,068,791 + ABZR86_RS04770 0.77 +0.2 1,068,791 + ABZR86_RS04770 0.77 +0.6 1,068,792 - ABZR86_RS04770 0.77 +0.1 1,068,792 - ABZR86_RS04770 0.77 -1.2 1,068,792 - ABZR86_RS04770 0.77 +1.8 1,068,792 - ABZR86_RS04770 0.77 +0.3 1,068,792 - ABZR86_RS04770 0.77 -0.0 1,068,794 - ABZR86_RS04770 0.77 +0.0 1,068,794 - ABZR86_RS04770 0.77 -0.6 1,068,794 - ABZR86_RS04770 0.77 +0.4 1,068,809 + ABZR86_RS04770 0.78 +0.5 1,068,809 + ABZR86_RS04770 0.78 -0.1 1,068,809 + ABZR86_RS04770 0.78 -0.5 1,068,809 + ABZR86_RS04770 0.78 +0.3 1,068,809 + ABZR86_RS04770 0.78 -0.1 1,068,809 + ABZR86_RS04770 0.78 -0.4 1,068,809 + ABZR86_RS04770 0.78 -0.1 1,068,809 + ABZR86_RS04770 0.78 +0.1 1,068,810 - ABZR86_RS04770 0.78 +0.5 1,068,810 - ABZR86_RS04770 0.78 +0.6 1,068,810 - ABZR86_RS04770 0.78 +1.1 1,068,810 - ABZR86_RS04770 0.78 +0.7 1,068,810 - ABZR86_RS04770 0.78 -0.3 1,068,810 - ABZR86_RS04770 0.78 +0.0 1,068,811 + ABZR86_RS04770 0.78 -0.4 1,068,812 - ABZR86_RS04770 0.78 -0.2 1,068,872 + ABZR86_RS04770 0.83 -0.3 1,068,911 + ABZR86_RS04770 0.86 -0.0 1,068,941 + ABZR86_RS04770 0.88 -1.0 1,068,942 - ABZR86_RS04770 0.89 -0.3 1,068,942 - ABZR86_RS04770 0.89 -1.1 1,069,153 - +0.9 1,069,153 - +0.2 1,069,325 + ABZR86_RS04775 0.46 +0.4 1,069,326 - ABZR86_RS04775 0.47 -0.7 1,069,331 + ABZR86_RS04775 0.48 -0.4 1,069,391 + ABZR86_RS04775 0.66 +0.2 1,069,392 - ABZR86_RS04775 0.66 +0.3 1,069,392 - ABZR86_RS04775 0.66 +0.2 1,069,392 - ABZR86_RS04775 0.66 +0.6 1,069,392 - ABZR86_RS04775 0.66 +0.5 1,069,440 - ABZR86_RS04775 0.81 -0.2 1,069,440 - ABZR86_RS04775 0.81 +0.0 1,069,600 - +0.1 1,069,804 + ABZR86_RS04780 0.35 +0.4 1,069,804 + ABZR86_RS04780 0.35 +2.0 1,069,849 + ABZR86_RS04780 0.42 +0.4 1,069,849 + ABZR86_RS04780 0.42 +1.1 1,069,849 + ABZR86_RS04780 0.42 -0.5 1,069,850 - ABZR86_RS04780 0.42 -0.5 1,069,850 - ABZR86_RS04780 0.42 +0.2 1,069,850 - ABZR86_RS04780 0.42 +0.5 1,069,852 + ABZR86_RS04780 0.42 +0.1 1,069,852 + ABZR86_RS04780 0.42 +0.6 1,069,852 + ABZR86_RS04780 0.42 +0.2 1,069,852 + ABZR86_RS04780 0.42 -0.1 1,069,853 - ABZR86_RS04780 0.42 +0.2 1,069,858 + ABZR86_RS04780 0.43 -1.0 1,070,059 + ABZR86_RS04780 0.74 -0.4 1,070,060 - ABZR86_RS04780 0.74 -0.3 1,070,072 - ABZR86_RS04780 0.75 +0.2 1,070,077 + ABZR86_RS04780 0.76 -0.1 1,070,077 + ABZR86_RS04780 0.76 -2.8 1,070,077 + ABZR86_RS04780 0.76 +0.3 1,070,077 + ABZR86_RS04780 0.76 -0.2 1,070,078 - ABZR86_RS04780 0.76 +1.5 1,070,078 - ABZR86_RS04780 0.76 -0.4 1,070,080 + ABZR86_RS04780 0.77 +0.4 1,070,080 + ABZR86_RS04780 0.77 -1.4 1,070,081 - ABZR86_RS04780 0.77 -0.1 1,070,081 - ABZR86_RS04780 0.77 +0.1
Or see this region's nucleotide sequence